MELO3C033487 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033487
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr08: 26705667 .. 26706674 (-)
RNA-Seq Expression	MELO3C033487
Synteny	MELO3C033487

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAATGATGTAGCTCGTCCCATTAGCACCATCCTTGATGGCACAAATTATATTACCTGGGCCCACCAAATTAGGAGTTTTCTAATAGGTCGAAAGTTATGGCGTATCGTCACGGGAGATATTACCAAACCTGTCAAACCTACTCTTCCAGTGAAAAATACCGGTAAGAACAACACTGAACATAATGATGCAAATACTTCTGATATCATTGTCCATGAAACTACTACGGAGGATATTAAGTACATTGAAATACTTGAGGACTAGGACAACAAAAATCACCAAATTATCACATGGTTAGGTAATACTTCTATTCCAGCCATCCATACTCAGTTTGATGCTTTTGATAGTGCGAAAGAACTCTAGAATTTTCTGTACACACGTTTTCAGTCTATAGGACTGGCTCATTAATATCAGTTGCATTCTATACTTGTTAGTCTAAATCAGCAAGTGGGACAATCTGTGAATGAATATCTAGCTACTCTTCAGCCTATTTGAACTCAGTTGGATCAGGCAAAAATTAGCCCTGACCATATTCGTCTCATCAAAGTCTTAATGGGTCTCCAACCAGAATATGAATCCGTTCGTGCTGCTCTATTGCATCGCAACCCTCTGTCATCTCTTGATGTTGCTGTTCAGGAAATCTTATTTGAGGAGAAAAGACTTGGCATTATCTCCTCTCTGCCCTCTGATGTTACCCTTGCCACTACTCATCTCCGACAGGCTAACGAGACCAGTTTTTGCAAAAATTGCAAACTTCATGGCCATAAGTTTGCTAACTGTTCTACCATTGAGTGTATGTATTGTCACAAACGAGGTCACATTTTGGATAATTGTCCAACCCGTCCACCCCGCCCTCCTGGTCACTCACACAAACCCAAGTTTTCTCCTAAAGCTAATTCTTCATCTGTTGTTGTTGTTGCTACATCATCTGACATCACTGCACCTTCAAGTCTTTAGTTGACTGATCTTCATGATTTACTGAAACAGGTGATCTCTTCCTAA

mRNA sequence

ATGGAGAAAAATGATGTAGCTCGTCCCATTAGCACCATCCTTGATGGCACAAATTATATTACCTGGGCCCACCAAATTAGGAGTTTTCTAATAGGTCGAAAGTTATGGCGTATCGTCACGGGAGATATTACCAAACCTGTCAAACCTACTCTTCCAGTGAAAAATACCGGTAAGAACAACACTGAACATAATGATGCAAATACTTCTGATATCATTGTCCATGAAACTACTACGGAGGATATTAAGTACATTGAAATACTTGAGGACTAGGACAACAAAAATCACCAAATTATCACATGGTTAGAACTCTAGAATTTTCTGTACACACGTTTTCAGTCTATAGGACTGGCTCATTAATATCAGTTGCATTCTATACTTGTTAGTCTAAATCAGCAAGTGGGACAATCTGTGAATGAATATCTAGCTACTCTTCAGCCTATTTGAACTCAGTTGGATCAGGCAAAAATTAGCCCTGACCATATTCGTCTCATCAAAGTCTTAATGGGTCTCCAACCAGAATATGAATCCGTTCGTGCTGCTCTATTGCATCGCAACCCTCTGTCATCTCTTGATGTTGCTGTTCAGGAAATCTTATTTGAGGAGAAAAGACTTGGCATTATCTCCTCTCTGCCCTCTGATGTTACCCTTGCCACTACTCATCTCCGACAGGCTAACGAGACCAGTTTTTGCAAAAATTGCAAACTTCATGGCCATAAGTTTGCTAACTGTTCTACCATTGAGTGTATGTATTGTCACAAACGAGGTCACATTTTGGATAATTGTCCAACCCGTCCACCCCGCCCTCCTGGTCACTCACACAAACCCAAGTTTTCTCCTAAAGCTAATTCTTCATCTGTTGTTGTTGTTGCTACATCATCTGACATCACTGCACCTTCAAGTCTTTAGTTGACTGATCTTCATGATTTACTGAAACAGGTGATCTCTTCCTAA

Coding sequence (CDS)

ATGGGTCTCCAACCAGAATATGAATCCGTTCGTGCTGCTCTATTGCATCGCAACCCTCTGTCATCTCTTGATGTTGCTGTTCAGGAAATCTTATTTGAGGAGAAAAGACTTGGCATTATCTCCTCTCTGCCCTCTGATGTTACCCTTGCCACTACTCATCTCCGACAGGCTAACGAGACCAGTTTTTGCAAAAATTGCAAACTTCATGGCCATAAGTTTGCTAACTGTTCTACCATTGAGTGTATGTATTGTCACAAACGAGGTCACATTTTGGATAATTGTCCAACCCGTCCACCCCGCCCTCCTGGTCACTCACACAAACCCAAGTTTTCTCCTAAAGCTAATTCTTCATCTGTTGTTGTTGTTGCTACATCATCTGACATCACTGCACCTTCAAGTCTTTAG

Protein sequence

MGLQPEYESVRAALLHRNPLSSLDVAVQEILFEEKRLGIISSLPSDVTLATTHLRQANETSFCKNCKLHGHKFANCSTIECMYCHKRGHILDNCPTRPPRPPGHSHKPKFSPKANSSSVVVVATSSDITAPSSL

Homology

[Close]

BLAST of MELO3C033487 vs. NCBI nr
Match: XP_008445037.1 (PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 8.4e-61
Identity = 120/134 (89.55%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MGLQPEYESVRAALLHRNPLSSLDVAVQEILFEEKRLGIISSLPSDVTLATTHLRQANET 60
           MGL+PEYESVRAALLHRNPL SLD AVQEILFEEKRLGI+SSL SDV LATTHLRQANET
Sbjct: 165 MGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANET 224

Query: 61  SFCKNCKLHGHKFANCSTIECMYCHKRGHILDNCPTRPPRPPGHSHKPKFSPKANSSSVV 120
            FCKNCKLHGHKFANC TIEC YCHKRGHILDNCPTRPPRPPGHSHKPKFS KA SSSVV
Sbjct: 225 IFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVV 284

Query: 121 VVATSSDITAPSSL 135
             ATSSDIT PSSL
Sbjct: 285 AAATSSDITEPSSL 298

[Close]

BLAST of MELO3C033487 vs. NCBI nr
Match: KAA0045094.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ96233.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.0 bits (611), Expect = 1.2e-59
Identity = 117/134 (87.31%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MGLQPEYESVRAALLHRNPLSSLDVAVQEILFEEKRLGIISSLPSDVTLATTHLRQANET 60
           MGL+PEYESVRAALLHRN L SLD AVQEILFE+KRLG++SSLP DV LATTHLR ANET
Sbjct: 164 MGLRPEYESVRAALLHRNHLPSLDAAVQEILFEKKRLGLVSSLPFDVALATTHLRLANET 223

Query: 61  SFCKNCKLHGHKFANCSTIECMYCHKRGHILDNCPTRPPRPPGHSHKPKFSPKANSSSVV 120
           SFCKNCKLH HKFANC TIEC YCHKRGHILDNCPTRPPRPPGHSHKPKFSPK  SSSVV
Sbjct: 224 SFCKNCKLHDHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSPKVGSSSVV 283

Query: 121 VVATSSDITAPSSL 135
             ATSSDITAPSSL
Sbjct: 284 AAATSSDITAPSSL 297

[Close]

BLAST of MELO3C033487 vs. NCBI nr
Match: XP_008450155.1 (PREDICTED: uncharacterized protein LOC103491828 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 1.2e-59
Identity = 117/134 (87.31%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MGLQPEYESVRAALLHRNPLSSLDVAVQEILFEEKRLGIISSLPSDVTLATTHLRQANET 60
           MGL+PEYESVRAALLHRN L SLD AVQEILFE+KRLG++SSLP DV LATTHLR ANET
Sbjct: 164 MGLRPEYESVRAALLHRNHLPSLDAAVQEILFEKKRLGLVSSLPFDVALATTHLRLANET 223

Query: 61  SFCKNCKLHGHKFANCSTIECMYCHKRGHILDNCPTRPPRPPGHSHKPKFSPKANSSSVV 120
           SFCKNCKLH HKFANC TIEC YCHKRGHILDNCPTRPPRPPGHSHKPKFSPK  SSSVV
Sbjct: 224 SFCKNCKLHDHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSPKVGSSSVV 283

Query: 121 VVATSSDITAPSSL 135
             ATSSDITAPSSL
Sbjct: 284 AAATSSDITAPSSL 297

[Close]

BLAST of MELO3C033487 vs. NCBI nr
Match: KAA0041166.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 239.2 bits (609), Expect = 2.1e-59
Identity = 118/134 (88.06%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MGLQPEYESVRAALLHRNPLSSLDVAVQEILFEEKRLGIISSLPSDVTLATTHLRQANET 60
           MGL+PEYESVRAALLHRNPL SLD AVQEILFEEKRLGI+SSL SDV LATTHLRQANET
Sbjct: 1   MGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANET 60

Query: 61  SFCKNCKLHGHKFANCSTIECMYCHKRGHILDNCPTRPPRPPGHSHKPKFSPKANSSSVV 120
            FCKNCKLHGHKFANC TIEC YCHKRGHILD CPTRPPRPPGHSHKPKFS KA SSSVV
Sbjct: 61  IFCKNCKLHGHKFANCPTIECRYCHKRGHILDTCPTRPPRPPGHSHKPKFSHKAGSSSVV 120

Query: 121 VVATSSDITAPSSL 135
             ATS DIT PSSL
Sbjct: 121 AAATSFDITEPSSL 134

[Close]

BLAST of MELO3C033487 vs. NCBI nr
Match: KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 238.0 bits (606), Expect = 4.6e-59
Identity = 119/134 (88.81%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MGLQPEYESVRAALLHRNPLSSLDVAVQEILFEEKRLGIISSLPSDVTLATTHLRQANET 60
           MGL+PEYESVRAALLHRNPL SLD AVQEILFEEKRLGI+SSL SDV LATTHLRQANET
Sbjct: 165 MGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANET 224

Query: 61  SFCKNCKLHGHKFANCSTIECMYCHKRGHILDNCPTRPPRPPGHSHKPKFSPKANSSSVV 120
            FCKNCKLHGHKFANC TIEC YCHKRGHILDNCPTRPPRPPGHSHKPKFS KA SSSVV
Sbjct: 225 IFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVV 284

Query: 121 VVATSSDITAPSSL 135
             AT SDIT PSSL
Sbjct: 285 AAAT-SDITEPSSL 297

[Close]

BLAST of MELO3C033487 vs. ExPASy TrEMBL
Match: A0A1S3BBA1 (uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.0e-61
Identity = 120/134 (89.55%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MGLQPEYESVRAALLHRNPLSSLDVAVQEILFEEKRLGIISSLPSDVTLATTHLRQANET 60
           MGL+PEYESVRAALLHRNPL SLD AVQEILFEEKRLGI+SSL SDV LATTHLRQANET
Sbjct: 165 MGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANET 224

Query: 61  SFCKNCKLHGHKFANCSTIECMYCHKRGHILDNCPTRPPRPPGHSHKPKFSPKANSSSVV 120
            FCKNCKLHGHKFANC TIEC YCHKRGHILDNCPTRPPRPPGHSHKPKFS KA SSSVV
Sbjct: 225 IFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVV 284

Query: 121 VVATSSDITAPSSL 135
             ATSSDIT PSSL
Sbjct: 285 AAATSSDITEPSSL 298

[Close]

BLAST of MELO3C033487 vs. ExPASy TrEMBL
Match: A0A5A7TPN5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00220 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 5.8e-60
Identity = 117/134 (87.31%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MGLQPEYESVRAALLHRNPLSSLDVAVQEILFEEKRLGIISSLPSDVTLATTHLRQANET 60
           MGL+PEYESVRAALLHRN L SLD AVQEILFE+KRLG++SSLP DV LATTHLR ANET
Sbjct: 164 MGLRPEYESVRAALLHRNHLPSLDAAVQEILFEKKRLGLVSSLPFDVALATTHLRLANET 223

Query: 61  SFCKNCKLHGHKFANCSTIECMYCHKRGHILDNCPTRPPRPPGHSHKPKFSPKANSSSVV 120
           SFCKNCKLH HKFANC TIEC YCHKRGHILDNCPTRPPRPPGHSHKPKFSPK  SSSVV
Sbjct: 224 SFCKNCKLHDHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSPKVGSSSVV 283

Query: 121 VVATSSDITAPSSL 135
             ATSSDITAPSSL
Sbjct: 284 AAATSSDITAPSSL 297

[Close]

BLAST of MELO3C033487 vs. ExPASy TrEMBL
Match: A0A1S3BPL0 (uncharacterized protein LOC103491828 OS=Cucumis melo OX=3656 GN=LOC103491828 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 5.8e-60
Identity = 117/134 (87.31%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MGLQPEYESVRAALLHRNPLSSLDVAVQEILFEEKRLGIISSLPSDVTLATTHLRQANET 60
           MGL+PEYESVRAALLHRN L SLD AVQEILFE+KRLG++SSLP DV LATTHLR ANET
Sbjct: 164 MGLRPEYESVRAALLHRNHLPSLDAAVQEILFEKKRLGLVSSLPFDVALATTHLRLANET 223

Query: 61  SFCKNCKLHGHKFANCSTIECMYCHKRGHILDNCPTRPPRPPGHSHKPKFSPKANSSSVV 120
           SFCKNCKLH HKFANC TIEC YCHKRGHILDNCPTRPPRPPGHSHKPKFSPK  SSSVV
Sbjct: 224 SFCKNCKLHDHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSPKVGSSSVV 283

Query: 121 VVATSSDITAPSSL 135
             ATSSDITAPSSL
Sbjct: 284 AAATSSDITAPSSL 297

[Close]

BLAST of MELO3C033487 vs. ExPASy TrEMBL
Match: A0A5A7TGJ6 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00960 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.0e-59
Identity = 118/134 (88.06%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MGLQPEYESVRAALLHRNPLSSLDVAVQEILFEEKRLGIISSLPSDVTLATTHLRQANET 60
           MGL+PEYESVRAALLHRNPL SLD AVQEILFEEKRLGI+SSL SDV LATTHLRQANET
Sbjct: 1   MGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANET 60

Query: 61  SFCKNCKLHGHKFANCSTIECMYCHKRGHILDNCPTRPPRPPGHSHKPKFSPKANSSSVV 120
            FCKNCKLHGHKFANC TIEC YCHKRGHILD CPTRPPRPPGHSHKPKFS KA SSSVV
Sbjct: 61  IFCKNCKLHGHKFANCPTIECRYCHKRGHILDTCPTRPPRPPGHSHKPKFSHKAGSSSVV 120

Query: 121 VVATSSDITAPSSL 135
             ATS DIT PSSL
Sbjct: 121 AAATSFDITEPSSL 134

[Close]

BLAST of MELO3C033487 vs. ExPASy TrEMBL
Match: A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.2e-59
Identity = 119/134 (88.81%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 1   MGLQPEYESVRAALLHRNPLSSLDVAVQEILFEEKRLGIISSLPSDVTLATTHLRQANET 60
           MGL+PEYESVRAALLHRNPL SLD AVQEILFEEKRLGI+SSL SDV LATTHLRQANET
Sbjct: 165 MGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANET 224

Query: 61  SFCKNCKLHGHKFANCSTIECMYCHKRGHILDNCPTRPPRPPGHSHKPKFSPKANSSSVV 120
            FCKNCKLHGHKFANC TIEC YCHKRGHILDNCPTRPPRPPGHSHKPKFS KA SSSVV
Sbjct: 225 IFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKPKFSHKAGSSSVV 284

Query: 121 VVATSSDITAPSSL 135
             AT SDIT PSSL
Sbjct: 285 AAAT-SDITEPSSL 297

The following BLAST results are available for this feature:

BLAST of MELO3C033487 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445037.1	8.4e-61	89.55	PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]	[more]
KAA0045094.1	1.2e-59	87.31	putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ96233.1 putative m...	[more]
XP_008450155.1	1.2e-59	87.31	PREDICTED: uncharacterized protein LOC103491828 [Cucumis melo]	[more]
KAA0041166.1	2.1e-59	88.06	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0043149.1	4.6e-59	88.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of MELO3C033487 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033487 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBA1	4.0e-61	89.55	uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=...	[more]
A0A5A7TPN5	5.8e-60	87.31	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BPL0	5.8e-60	87.31	uncharacterized protein LOC103491828 OS=Cucumis melo OX=3656 GN=LOC103491828 PE=...	[more]
A0A5A7TGJ6	1.0e-59	88.06	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DG18	2.2e-59	88.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of MELO3C033487 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 80..96 e-value: 0.065 score: 18.5 coord: 62..78 e-value: 4.8 score: 7.0
None	No IPR available	GENE3D	4.10.60.10		coord: 47..101 e-value: 2.3E-7 score: 32.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..118
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 53..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033487.1	MELO3C033487.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding