MELO3C033466 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033466
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Girdin-like
Location	chr08: 29540292 .. 29540537 (-)
RNA-Seq Expression	MELO3C033466
Synteny	MELO3C033466

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCACTCTGAAGAGTATGAGATACTAAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCACTTCAAAATTCAAGTAAGAGGGTAACACAAGAATATGAGTCATTGAATACAGATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACGAGAGATTTCCAAGTGCTAGTGGAACATGTAGATCAGACAATCGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGCGTAA

mRNA sequence

atggAGCACTCTGAAGAGTATGAGATACTAAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCACTTCAAAATTCAAGTAAGAGGGTAACACAAGAATATGAGTCATTGAATACAGATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACGAGAGATTTCCAAGTGCTAGTGGAACATGTAGATCAGACAATCGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGCGTAA

Coding sequence (CDS)

ATGGAGCACTCTGAAGAGTATGAGATACTAAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCACTTCAAAATTCAAGTAAGAGGGTAACACAAGAATATGAGTCATTGAATACAGATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACGAGAGATTTCCAAGTGCTAGTGGAACATGTAGATCAGACAATCGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGCGTAA

Protein sequence

MEHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMKVDYDLQTRDFQVLVEHVDQTIEFLRMVSKRANGFA

Homology

[Close]

BLAST of MELO3C033466 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 2.0e-33
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMKVDYDLQTRDFQVLVE 61
           E SEEYEILKNYVDSLHYQLTALQNSSKR+TQEYESLNTDYVQMKVDYDLQTRDFQVLVE
Sbjct: 208 ERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLNTDYVQMKVDYDLQTRDFQVLVE 267

Query: 62  HVDQTIEFLRMVSKRANGFA 82
            VDQTIEFLRMVSKRANGFA
Sbjct: 268 RVDQTIEFLRMVSKRANGFA 287

[Close]

BLAST of MELO3C033466 vs. NCBI nr
Match: TYK18656.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 4.5e-33
Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMKVDYDLQTRDFQVLVE 61
           E SEEYEILKNYVDSLHYQLTALQNSSKR+TQEYESLNTDYVQMKVDYDLQTRDFQVLVE
Sbjct: 256 ERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLNTDYVQMKVDYDLQTRDFQVLVE 315

Query: 62  HVDQTIEFLRMVSKRANGFA 82
            VDQTIEFLRM+SKRANGFA
Sbjct: 316 RVDQTIEFLRMMSKRANGFA 335

[Close]

BLAST of MELO3C033466 vs. NCBI nr
Match: KAA0036949.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 5.8e-33
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1   MEHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMKVDYDLQTRDFQVLV 60
           +EHSEEYEILKNY DSLHYQLTALQNSSKR+TQEYESLNTDYVQMKVDYD+QTRDFQVLV
Sbjct: 499 VEHSEEYEILKNYADSLHYQLTALQNSSKRITQEYESLNTDYVQMKVDYDMQTRDFQVLV 558

Query: 61  EHVDQTIEFLRMVSKRANGFA 82
           E VDQTIEFLRMVSKRAN FA
Sbjct: 559 ERVDQTIEFLRMVSKRANDFA 579

[Close]

BLAST of MELO3C033466 vs. NCBI nr
Match: KAA0062685.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 2.9e-32
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMKVDYDLQTRDFQVLVE 61
           E SEEYEILKNYV+SLHYQLTALQNSS+R+TQEYESLNTDYVQMKVDYDLQTRDFQVLVE
Sbjct: 231 ECSEEYEILKNYVESLHYQLTALQNSSRRITQEYESLNTDYVQMKVDYDLQTRDFQVLVE 290

Query: 62  HVDQTIEFLRMVSKRANGFA 82
            VDQTIEFLRMVSKRANGFA
Sbjct: 291 RVDQTIEFLRMVSKRANGFA 310

[Close]

BLAST of MELO3C033466 vs. NCBI nr
Match: TYK04062.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 2.9e-32
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMKVDYDLQTRDFQVLVE 61
           E SEEYEILKNY DSLHYQLTALQNSS+R+TQEYESLNTDYVQMKVDYDLQTRDFQVLVE
Sbjct: 23  ECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLNTDYVQMKVDYDLQTRDFQVLVE 82

Query: 62  HVDQTIEFLRMVSKRANGFA 82
            VDQTIEFLRMVSKRANGFA
Sbjct: 83  RVDQTIEFLRMVSKRANGFA 102

[Close]

BLAST of MELO3C033466 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.7e-34
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMKVDYDLQTRDFQVLVE 61
           E SEEYEILKNYVDSLHYQLTALQNSSKR+TQEYESLNTDYVQMKVDYDLQTRDFQVLVE
Sbjct: 208 ERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLNTDYVQMKVDYDLQTRDFQVLVE 267

Query: 62  HVDQTIEFLRMVSKRANGFA 82
            VDQTIEFLRMVSKRANGFA
Sbjct: 268 RVDQTIEFLRMVSKRANGFA 287

[Close]

BLAST of MELO3C033466 vs. ExPASy TrEMBL
Match: A0A5D3D533 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.2e-33
Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMKVDYDLQTRDFQVLVE 61
           E SEEYEILKNYVDSLHYQLTALQNSSKR+TQEYESLNTDYVQMKVDYDLQTRDFQVLVE
Sbjct: 256 ERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLNTDYVQMKVDYDLQTRDFQVLVE 315

Query: 62  HVDQTIEFLRMVSKRANGFA 82
            VDQTIEFLRM+SKRANGFA
Sbjct: 316 RVDQTIEFLRMMSKRANGFA 335

[Close]

BLAST of MELO3C033466 vs. ExPASy TrEMBL
Match: A0A5A7T6E2 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00290 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.8e-33
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1   MEHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMKVDYDLQTRDFQVLV 60
           +EHSEEYEILKNY DSLHYQLTALQNSSKR+TQEYESLNTDYVQMKVDYD+QTRDFQVLV
Sbjct: 499 VEHSEEYEILKNYADSLHYQLTALQNSSKRITQEYESLNTDYVQMKVDYDMQTRDFQVLV 558

Query: 61  EHVDQTIEFLRMVSKRANGFA 82
           E VDQTIEFLRMVSKRAN FA
Sbjct: 559 ERVDQTIEFLRMVSKRANDFA 579

[Close]

BLAST of MELO3C033466 vs. ExPASy TrEMBL
Match: A0A5A7V9X6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-32
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMKVDYDLQTRDFQVLVE 61
           E SEEYEILKNYV+SLHYQLTALQNSS+R+TQEYESLNTDYVQMKVDYDLQTRDFQVLVE
Sbjct: 231 ECSEEYEILKNYVESLHYQLTALQNSSRRITQEYESLNTDYVQMKVDYDLQTRDFQVLVE 290

Query: 62  HVDQTIEFLRMVSKRANGFA 82
            VDQTIEFLRMVSKRANGFA
Sbjct: 291 RVDQTIEFLRMVSKRANGFA 310

[Close]

BLAST of MELO3C033466 vs. ExPASy TrEMBL
Match: A0A5D3BYW3 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3019G00040 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-32
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 2   EHSEEYEILKNYVDSLHYQLTALQNSSKRVTQEYESLNTDYVQMKVDYDLQTRDFQVLVE 61
           E SEEYEILKNY DSLHYQLTALQNSS+R+TQEYESLNTDYVQMKVDYDLQTRDFQVLVE
Sbjct: 23  ECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLNTDYVQMKVDYDLQTRDFQVLVE 82

Query: 62  HVDQTIEFLRMVSKRANGFA 82
            VDQTIEFLRMVSKRANGFA
Sbjct: 83  RVDQTIEFLRMVSKRANGFA 102

The following BLAST results are available for this feature:

BLAST of MELO3C033466 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23632.1	2.0e-33	96.25	girdin-like [Cucumis melo var. makuwa]	[more]
TYK18656.1	4.5e-33	95.00	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0036949.1	5.8e-33	92.59	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0062685.1	2.9e-32	93.75	girdin-like [Cucumis melo var. makuwa]	[more]
TYK04062.1	2.9e-32	93.75	girdin-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033466 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033466 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJ95	9.7e-34	96.25	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P...	[more]
A0A5D3D533	2.2e-33	95.00	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE...	[more]
A0A5A7T6E2	2.8e-33	92.59	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00290 PE=...	[more]
A0A5A7V9X6	1.4e-32	93.75	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 P...	[more]
A0A5D3BYW3	1.4e-32	93.75	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3019G00040 P...	[more]

BLAST of MELO3C033466 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 21..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033466.1	MELO3C033466.1	mRNA