MELO3C033462.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C033462.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr08: 29807326 .. 29808528 (-)
RNA-Seq ExpressionMELO3C033462.jh1
SyntenyMELO3C033462.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCATGTGACTTCGTGGAGATTTCCATTGACTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACTGTATGCACATAGGTTATATTTTTGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGTGGGCTACACTACGACAAAGACGATGGGAGTGTCAGGCAGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTGCTGGGCGTGTCCTACACCACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGTTATGCCTTGCTAGATTTTTTATGATGAACTTGGAAGATATTTTAGAAAGCCTTATTTATTACACGTTTATGTTAAATTCTTTGATTGAGCATATTTATACGTCTAAAGGTTTATCACATGTTTTGACGTCCGTATTTAGAGTTTTAAATTTAGTCACTCACTGGGCCTCATAGCTCATTCTTTTCAAAATGTTTTCCACTTTTCAGGTAGAGATCGAGCTTCCAGTGCCTGATAGACTGCCAACGTCTGCTCAAAGTTCCGGATCAAACTCCAGTACGTGGTTGGAGTTGTATTTTGAGTCTGTTCATGTTGAAATGTTTTGTAAGGTTTGTATAATATCGTCCTAGAGGTCGTGGTCGTAAAACTCTAGTTGTATAGGTTTTGGTCGTGATATTTATATGAGGTTATTTTACAAACCAAGTGATGTCAGGACTGCATCTCGTGTATGTTGGGAAGGTTTCCGTGGATTCCGTCGTGTGGTGTTCCATGTTGAATATTCTATATCTAAGATTAGTATGTTTATTAGGTTTAATGTTTCAGTAGGGTCAACAAGGATCGTTAGAGGAGACGATGTCTATTGGCTTACGCCGTCTTTCGGGCTAAGACAGCAGATGGTCCGGGAGGGGTGTGACAAGCCTTATCCTCAGTAGATGCCAATTTATGGCAAGAAGCTATCAATGATGAAATAGACTCTCTTGAATCCAATAGAACTTGACACCTCGTTGACTTACCCCCTGGATGTAAAGCTATAGGCTGCAAATGGGTTTTAAGGAAGAAACTCAAACCTGATGATCAGTAGATAAGTATAAGGCAAGATTAGTAGCAAAAGGATTTAGGCAGAAGGAGAACATAGATTTTTTGATACTTTTTCCCCAGTTACTAGAATCATCTCTATTAGAGTGTCGATATCTATAG

mRNA sequence

ATGTTTTCATGTGACTTCGTGGAGATTTCCATTGACTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACTGTATGCACATAGGTTATATTTTTGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGTGGGCTACACTACGACAAAGACGATGGGAGTGTCAGGCAGGCCCCACTACATCTCACTCACTGGGCCTCATAGCTCATTCTTTTCAAAATGTTTTCCACTTTTCAGGTAGAGATCGAGCTTCCAGTGCCTGATAGACTGCCAACGTCTGCTCAAAGTTCCGGATCAAACTCCAGTTTTGGTCGTGATATTTATATGAGGTTATTTTACAAACCAAGTGATGTCAGGACTGCATCTCGTGTATGTTGGGAAGGTTTCCGTGGATTCCGTCGTGTGGTGTTCCATGTTGAATATTCTATATCTAAGATTAGTATGTTTATTAGGTTTAATGTTTCAGTAGGGTCAACAAGGATCGTTAGAGGAGACGATGTCTATTGGCTTACGCCGTCTTTCGGGCTAAGACAGCAGATGGTCCGGGAGGGGTTTACTAGAATCATCTCTATTAGAGTGTCGATATCTATAG

Coding sequence (CDS)

ATGTTTTCCACTTTTCAGGTAGAGATCGAGCTTCCAGTGCCTGATAGACTGCCAACGTCTGCTCAAAGTTCCGGATCAAACTCCAGTTTTGGTCGTGATATTTATATGAGGTTATTTTACAAACCAAGTGATGTCAGGACTGCATCTCGTGTATGTTGGGAAGGTTTCCGTGGATTCCGTCGTGTGGTGTTCCATGTTGAATATTCTATATCTAAGATTAGTATGTTTATTAGGTTTAATGTTTCAGTAGGGTCAACAAGGATCGTTAGAGGAGACGATGTCTATTGGCTTACGCCGTCTTTCGGGCTAAGACAGCAGATGGTCCGGGAGGGGTTTACTAGAATCATCTCTATTAGAGTGTCGATATCTATA

Protein sequence

MFSTFQVEIELPVPDRLPTSAQSSGSNSSFGRDIYMRLFYKPSDVRTASRVCWEGFRGFRRVVFHVEYSISKISMFIRFNVSVGSTRIVRGDDVYWLTPSFGLRQQMVREGFTRIISIRVSISI
Homology
[Close]
BLAST of MELO3C033462.jh1 vs. NCBI nr
Match: KAA0041121.1 (hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (351), Expect = 1.95e-38
Identity = 74/111 (66.67%), Postives = 79/111 (71.17%), Query Frame = 0 

Query: 7   VEIELPVPDRLPTSAQSSGSNSSFGRDIYMR------LFYKPSDVRTASRVCWEGFRGFR 66
           VEIELPVPDRLPTSA+SS SNSS   ++Y        LFYKPSDVR  SRVCWEGFRGF 
Sbjct: 129 VEIELPVPDRLPTSAESSASNSSTWLELYFESVHVEMLFYKPSDVRIVSRVCWEGFRGFL 188

Query: 67  RVVFHVEYSISKISMFIRFNVSVGSTRIVRGDDVYWLTPSFGLRQQMVREG 111
            VVFHVEYSISKI MFI FNV  G    +        TPSFGLRQQ+VREG
Sbjct: 189 CVVFHVEYSISKIGMFIGFNVQYGQQGSLEETMSVSFTPSFGLRQQVVREG 239

[Close]
BLAST of MELO3C033462.jh1 vs. NCBI nr
Match: KAA0054353.1 (uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa] >TYK12390.1 uncharacterized protein E5676_scaffold302G001720 [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (347), Expect = 8.44e-38
Identity = 73/101 (72.28%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 7   VEIELPVPDRLPTSAQSSGSNSSFGRDIYMR------LFYKPSDVRTASRVCWEGFRGFR 66
           VEIELPV D L TSA+SSGSNSS    +Y        LFYKPSDV T SRVCWEGFRGFR
Sbjct: 97  VEIELPVLDTLATSAESSGSNSSTWLKLYFESLHVEMLFYKPSDVMTTSRVCWEGFRGFR 156

Query: 67  RVVFHVEYSISKISMFIRFNVSVGSTRIVRGDDVYWLTPSF 101
            VVFHVEYSISKI MFIRFNVSVGST IVRG+DV W    F
Sbjct: 157 CVVFHVEYSISKIGMFIRFNVSVGSTGIVRGEDVRWFHVVF 197

[Close]
BLAST of MELO3C033462.jh1 vs. NCBI nr
Match: TYK04219.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 6.53e-18
Identity = 51/99 (51.52%), Postives = 57/99 (57.58%), Query Frame = 0 

Query: 3   STFQVEIELPVPDRLPTSAQSSGSNSSFGRDIYMRLFYKPSDVRTASRVCWEGFRGFRRV 62
           S  +V+IELPVPD LPTSA+SS SNSSFGRD+Y+RLFYKPSDVR AS             
Sbjct: 805 SATEVKIELPVPDTLPTSAESSESNSSFGRDVYIRLFYKPSDVRAASYA----------- 864

Query: 63  VFHVEYSISKISMFIRFNVSVGSTRIVRGDDVYWLTPSF 101
                             +SVGS  IVRGDDV WL   F
Sbjct: 865 -----------------QLSVGSAGIVRGDDVCWLHAIF 875

[Close]
BLAST of MELO3C033462.jh1 vs. NCBI nr
Match: KAA0067117.1 (hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ97479.1 hypothetical protein E5676_scaffold598G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 3.23e-15
Identity = 48/101 (47.52%), Postives = 51/101 (50.50%), Query Frame = 0 

Query: 7   VEIELPVPDRLPTSAQSSGSNSSFGRDIYMR------LFYKPSDVRTASRVCWEGFRGFR 66
           VEIELPVPD LPTSA+S GSNSS   ++Y        LFYKPSDVR AS VCWEG  G  
Sbjct: 128 VEIELPVPDTLPTSAESFGSNSSTWLELYFEFVHVEMLFYKPSDVRAASYVCWEGSAG-- 187

Query: 67  RVVFHVEYSISKISMFIRFNVSVGSTRIVRGDDVYWLTPSF 101
                                      IVRGDDV WL   F
Sbjct: 188 ---------------------------IVRGDDVCWLHTVF 199

[Close]
BLAST of MELO3C033462.jh1 vs. NCBI nr
Match: TYK04298.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 1.84e-14
Identity = 49/105 (46.67%), Postives = 50/105 (47.62%), Query Frame = 0 

Query: 7   VEIELPVPDRLPTSAQSSGSNSSFGRDIYMRLFYKPSDVRTASRVCWEGFRGFRRVVFHV 66
           VEIELPVPDRLPTSAQSSGSNS                                      
Sbjct: 143 VEIELPVPDRLPTSAQSSGSNS-------------------------------------- 193

Query: 67  EYSISKISMFIRFNVSVGSTRIVRGDDVYWLTPSFGLRQQMVREG 111
                           +GST IVRGDDVYWLTPSFGLRQQMVREG
Sbjct: 203 ----------------IGSTGIVRGDDVYWLTPSFGLRQQMVREG 193

[Close]
BLAST of MELO3C033462.jh1 vs. ExPASy TrEMBL
Match: A0A5A7THH5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00290 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 9.43e-39
Identity = 74/111 (66.67%), Postives = 79/111 (71.17%), Query Frame = 0 

Query: 7   VEIELPVPDRLPTSAQSSGSNSSFGRDIYMR------LFYKPSDVRTASRVCWEGFRGFR 66
           VEIELPVPDRLPTSA+SS SNSS   ++Y        LFYKPSDVR  SRVCWEGFRGF 
Sbjct: 129 VEIELPVPDRLPTSAESSASNSSTWLELYFESVHVEMLFYKPSDVRIVSRVCWEGFRGFL 188

Query: 67  RVVFHVEYSISKISMFIRFNVSVGSTRIVRGDDVYWLTPSFGLRQQMVREG 111
            VVFHVEYSISKI MFI FNV  G    +        TPSFGLRQQ+VREG
Sbjct: 189 CVVFHVEYSISKIGMFIGFNVQYGQQGSLEETMSVSFTPSFGLRQQVVREG 239

[Close]
BLAST of MELO3C033462.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UEC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001720 PE=4 SV=1)

HSP 1 Score: 138 bits (347), Expect = 4.09e-38
Identity = 73/101 (72.28%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 7   VEIELPVPDRLPTSAQSSGSNSSFGRDIYMR------LFYKPSDVRTASRVCWEGFRGFR 66
           VEIELPV D L TSA+SSGSNSS    +Y        LFYKPSDV T SRVCWEGFRGFR
Sbjct: 97  VEIELPVLDTLATSAESSGSNSSTWLKLYFESLHVEMLFYKPSDVMTTSRVCWEGFRGFR 156

Query: 67  RVVFHVEYSISKISMFIRFNVSVGSTRIVRGDDVYWLTPSF 101
            VVFHVEYSISKI MFIRFNVSVGST IVRG+DV W    F
Sbjct: 157 CVVFHVEYSISKIGMFIRFNVSVGSTGIVRGEDVRWFHVVF 197

[Close]
BLAST of MELO3C033462.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C1H9 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00230 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.16e-18
Identity = 51/99 (51.52%), Postives = 57/99 (57.58%), Query Frame = 0 

Query: 3   STFQVEIELPVPDRLPTSAQSSGSNSSFGRDIYMRLFYKPSDVRTASRVCWEGFRGFRRV 62
           S  +V+IELPVPD LPTSA+SS SNSSFGRD+Y+RLFYKPSDVR AS             
Sbjct: 805 SATEVKIELPVPDTLPTSAESSESNSSFGRDVYIRLFYKPSDVRAASYA----------- 864

Query: 63  VFHVEYSISKISMFIRFNVSVGSTRIVRGDDVYWLTPSF 101
                             +SVGS  IVRGDDV WL   F
Sbjct: 865 -----------------QLSVGSAGIVRGDDVCWLHAIF 875

[Close]
BLAST of MELO3C033462.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VIY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold598G00400 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.57e-15
Identity = 48/101 (47.52%), Postives = 51/101 (50.50%), Query Frame = 0 

Query: 7   VEIELPVPDRLPTSAQSSGSNSSFGRDIYMR------LFYKPSDVRTASRVCWEGFRGFR 66
           VEIELPVPD LPTSA+S GSNSS   ++Y        LFYKPSDVR AS VCWEG  G  
Sbjct: 128 VEIELPVPDTLPTSAESFGSNSSTWLELYFEFVHVEMLFYKPSDVRAASYVCWEGSAG-- 187

Query: 67  RVVFHVEYSISKISMFIRFNVSVGSTRIVRGDDVYWLTPSF 101
                                      IVRGDDV WL   F
Sbjct: 188 ---------------------------IVRGDDVCWLHTVF 199

[Close]
BLAST of MELO3C033462.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BZ50 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00270 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.90e-15
Identity = 49/105 (46.67%), Postives = 50/105 (47.62%), Query Frame = 0 

Query: 7   VEIELPVPDRLPTSAQSSGSNSSFGRDIYMRLFYKPSDVRTASRVCWEGFRGFRRVVFHV 66
           VEIELPVPDRLPTSAQSSGSNS                                      
Sbjct: 143 VEIELPVPDRLPTSAQSSGSNS-------------------------------------- 193

Query: 67  EYSISKISMFIRFNVSVGSTRIVRGDDVYWLTPSFGLRQQMVREG 111
                           +GST IVRGDDVYWLTPSFGLRQQMVREG
Sbjct: 203 ----------------IGSTGIVRGDDVYWLTPSFGLRQQMVREG 193

The following BLAST results are available for this feature:
BLAST of MELO3C033462.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041121.11.95e-3866.67hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa][more]
KAA0054353.18.44e-3872.28uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa] >TYK12... [more]
TYK04219.16.53e-1851.52DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0067117.13.23e-1547.52hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ9747... [more]
TYK04298.11.84e-1446.67pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C033462.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033462.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7THH59.43e-3966.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UEC14.09e-3872.28Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C1H93.16e-1851.52DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7VIY91.57e-1547.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BZ508.90e-1546.67Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of MELO3C033462.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033462.jh1.t1MELO3C033462.jh1.t1mRNA