MELO3C033455 (gene) Melon (DHL92) v4

Overview
NameMELO3C033455
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTy3-gypsy retrotransposon protein
Locationchr08: 28462670 .. 28464657 (+)
RNA-Seq ExpressionMELO3C033455
SyntenyMELO3C033455
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTTATCGTTGAGGCCTGAAGGACTCCAACACACCAGCGACAGCAGCAGCTACCAAAGCCTTTATTTATTTAGTGCCATTGGCGTCAGTCTGTAGCTCCACCTTTTGCTGGAACAATAAATATACCCTCTTCTTCTTCTTCTTCTTCTTTCTCTCTTTTTCGTTCCCCCATTTCTTTACCATTTCAATTTCCCTTCTCTTTTTGATCCATTTTGAATGTTCTTTTTGGGTTTTTTCCTTCTGAGTTTTGTTTCTTTTCTTGATTCTTTGCTCTAATGGAAAACAGAGATAAGCTTGTTGTTCAAGCGACTGAAATGGGTTCACGAAATCCCCCAGACGGCATATTTTTTTTAAACATGGCCCTTTGTAACCCGATATAAAGACTCCTTATTTGATTTTATTTAAATTTCATAAACTTAAATATGATAAATACTATAAATGAAGTGAAATCCAGTCAAGTATTACTACAAAACAAAGAATAATTAGATAACTTGGATCAATATCCGGATCCTATCCTATTGTATATGTAAATGATATAAAAAAGATGTGAAGAACCCATTTCAACATTGTCGCCCAGTCAATTTCTATCAATGGAACAAGTCTGAAGAATAAGTATGATGGTACTCTTTTATCTACTTCAACACCGATGCAAATGATCAAAAGCATGGCGTGCATGTGAGGTTGCGTTGGATGAGATTCGAGGATCTCTAGAAGACTCCTATAAGATGATACCTAAACTTGCTTAGATATTGGAACTCAACAACCCAGGTATATTGGCAGTATACATGTTCATATATGTAATTATTTTTTCGTCATTCTTTCCTTACCATTAATGTACATATTTGTCATGTTCATAGGTTCTGTTGTTGAATACAAAGTTAATGCCGATGGTAGATTTATATACTTCTTCATGGCATTATCTACTTTCATTTTTTGTTGGCAACATTGTCGCCCAGTCAATTTCTATCAATGGAACAAGTCTGAAGAATAAGTATGATGGTACTCTTTTATCTACTTCAACACCGATGCAAATGATCAAATATTTCCACTAGCCTTTTATGTTGTTGATTTTGAGAATGATTCCTCTTGAACCTGGTTTTGCAATAAATTGAAGAGAATTATAGGTGGACATAATGAGGTTGTCATAGTATCTGATAGGCATAAAAGTATATGCAAAGTCATAGAGGTAGTATTTCCCAACGTTGTATATTGCATGTGTCGTGTTCATTTACTTATGAACCTAAAGTTGAAGTACAAGAGAATAGTTAATATCGTATTTCATGCATGTGAGAATGCTTTTAATATTGTAGACTTAAAACACGAAATGCGATTGTTGGAATCTTCTGCCCCTGGTATATGTGAGGAGCTTGAATCCATTGGTTTTCTAAGTGGCCTCATGTGTAGTCACCATGTAGAAGATATAATGTCATGACCACTAATATATCTAAAAGTTTGAATTCTGTCATGCTCAAGGCTAGGGAGTTACCAATATGTTCCATGCTTGAGGTTTTGCAAATGGTGTTACAAATATGATTTTTCAAACGAAGAAATGAAGCTGATTATCAAGTTACAGATTTTATAAAAACAATTGAAGGTATATTAAGGGAACAGATTGAACGTAATCAATCAATGAAGGTATGCTCCATTTATATACACTTACATATGCTGCATATCATCATATGGAATATATACATTATCTAATTCTTTTGTATATTTGCAATGTAGGTTAATCTGGTTAACAACATCAAATACCAGGTCATAGATGGAACCTCGCAATATGTGGTTTACTTACCTACGAAGGTTTGTAGTTGCAGGATGTGGTATATATTGGAAATACCTTGTGTGCATGCATGTGCTGTTTTCACCATGAACCGTTTGTCAATTAAATCATATGTCTCAGCTCTTTACTTGAACAACACTTTAAGTTTAATATATAGAGGAGTAATAAATCCATTATGCGATCATCGATAATGGCAAATACCTGA

mRNA sequence

ATGCGGTTATCGTTGAGGCCTGAAGGACTCCAACACACCAGCGACAGCAGCAGCTACCAAAGCCTTTATTTATTTAGTGCCATTGGCGTCAGTTCTGTTGTTGAATACAAAGTTAATGCCGATGACTTAAAACACGAAATGCGATTGTTGGAATCTTCTGCCCCTGGTATATGTGAGGAGCTTGAATCCATTGGTTTTCTAAGTGGCCTCATGTGTAGTCACCATGTTAATCTGGTTAACAACATCAAATACCAGGTCATAGATGGAACCTCGCAATATGTGGTTTACTTACCTACGAAGAGGAGTAATAAATCCATTATGCGATCATCGATAATGGCAAATACCTGA

Coding sequence (CDS)

ATGCGGTTATCGTTGAGGCCTGAAGGACTCCAACACACCAGCGACAGCAGCAGCTACCAAAGCCTTTATTTATTTAGTGCCATTGGCGTCAGTTCTGTTGTTGAATACAAAGTTAATGCCGATGACTTAAAACACGAAATGCGATTGTTGGAATCTTCTGCCCCTGGTATATGTGAGGAGCTTGAATCCATTGGTTTTCTAAGTGGCCTCATGTGTAGTCACCATGTTAATCTGGTTAACAACATCAAATACCAGGTCATAGATGGAACCTCGCAATATGTGGTTTACTTACCTACGAAGAGGAGTAATAAATCCATTATGCGATCATCGATAATGGCAAATACCTGA

Protein sequence

MRLSLRPEGLQHTSDSSSYQSLYLFSAIGVSSVVEYKVNADDLKHEMRLLESSAPGICEELESIGFLSGLMCSHHVNLVNNIKYQVIDGTSQYVVYLPTKRSNKSIMRSSIMANT
Homology
[Close]
BLAST of MELO3C033455 vs. NCBI nr
Match: KAA0046937.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-05
Identity = 40/99 (40.40%), Postives = 47/99 (47.47%), Query Frame = 0 

Query: 34  VEYKVNADDLKHEMRLLESSAPGICEELESIGF-----------------------LSGL 93
           +  K    D +HEMRLLESSA GI +E ESI F                       L+  
Sbjct: 182 ISLKNKYGDFEHEMRLLESSASGIRKEFESISFAKWSRAYSPRRRYNVMTTNIFESLNST 241

Query: 94  MCSHH---------VNLVNNIKYQVIDGTSQYVVYLPTK 101
           M             VN +NN+KYQV D TSQYV+YLPTK
Sbjct: 242 MLKARELSICPMLKVNPINNMKYQVRDVTSQYVIYLPTK 280

[Close]
BLAST of MELO3C033455 vs. ExPASy TrEMBL
Match: A0A5A7TYE6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001070 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 40/99 (40.40%), Postives = 47/99 (47.47%), Query Frame = 0 

Query: 34  VEYKVNADDLKHEMRLLESSAPGICEELESIGF-----------------------LSGL 93
           +  K    D +HEMRLLESSA GI +E ESI F                       L+  
Sbjct: 182 ISLKNKYGDFEHEMRLLESSASGIRKEFESISFAKWSRAYSPRRRYNVMTTNIFESLNST 241

Query: 94  MCSHH---------VNLVNNIKYQVIDGTSQYVVYLPTK 101
           M             VN +NN+KYQV D TSQYV+YLPTK
Sbjct: 242 MLKARELSICPMLKVNPINNMKYQVRDVTSQYVIYLPTK 280

The following BLAST results are available for this feature:
BLAST of MELO3C033455 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0046937.14.3e-0540.40ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C033455 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033455 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TYE62.1e-0540.40Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of MELO3C033455 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 33..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033455.1MELO3C033455.1mRNA