MELO3C033441 (gene) Melon (DHL92) v4

Overview
NameMELO3C033441
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr07: 7473285 .. 7473467 (-)
RNA-Seq ExpressionMELO3C033441
SyntenyMELO3C033441
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCATGGCAAGTACATCGAGACTACCTAAGCACACTTGGACTAAAGAGGAAGAGGTAGGCCTTGTCGAGTTAGTAAATGTTGGTGGGTGGAGGTCCAACAATGGGACCTTTCTCCCCGGGTACCTAAATCAGCTGGTGAGAATGATGGCCTTCAAGATCCCAGGTTGTAACGTCCATGCTTCA

mRNA sequence

AGCATGGCAAGTACATCGAGACTACCTAAGCACACTTGGACTAAAGAGGAAGAGGTAGGCCTTGTCGAGTTAGTAAATGTTGGTGGGTGGAGGTCCAACAATGGGACCTTTCTCCCCGGGTACCTAAATCAGCTGGTGAGAATGATGGCCTTCAAGATCCCAGGTTGTAACGTCCATGCTTCA

Coding sequence (CDS)

ATGGCAAGTACATCGAGACTACCTAAGCACACTTGGACTAAAGAGGAAGAGGTAGGCCTTGTCGAGTTAGTAAATGTTGGTGGGTGGAGGTCCAACAATGGGACCTTTCTCCCCGGGTACCTAAATCAGCTGGTGAGAATGATGGCCTTCAAGATCCCAGGTTGTAACGTCCATGCTTCA

Protein sequence

MASTSRLPKHTWTKEEEVGLVELVNVGGWRSNNGTFLPGYLNQLVRMMAFKIPGCNVHAS
Homology
[Close]
BLAST of MELO3C033441 vs. NCBI nr
Match: KAA0052248.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01812.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MASTSRLPKHTWTKEEEVGLVELVNVGGWRSNNGTFLPGYLNQLVRMMAFKIPGCNVHAS 60
          MASTSRLPKHTWTKEEEVGLVELVNVGGWRSNNGTFLPGYLNQLVRMMAFKIPGCNVHAS
Sbjct: 1  MASTSRLPKHTWTKEEEVGLVELVNVGGWRSNNGTFLPGYLNQLVRMMAFKIPGCNVHAS 60

[Close]
BLAST of MELO3C033441 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 8.2e-24
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 1   MASTSRLPKHTWTKEEEVGLVELVNVGGWRSNNGTFLPGYLNQLVRMMAFKIPGCNVHAS 60
           M S+SRLPKHTWTKEEE GLVELVN GGWRS+NGTF PGYLNQL RMMAFKIPGCN+HAS
Sbjct: 347 MTSSSRLPKHTWTKEEEAGLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCNIHAS 406

[Close]
BLAST of MELO3C033441 vs. NCBI nr
Match: KAA0060663.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 8.2e-24
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 1  MASTSRLPKHTWTKEEEVGLVELVNVGGWRSNNGTFLPGYLNQLVRMMAFKIPGCNVHAS 60
          M S+SRLPKHTWTKEEE GLVELVN GGWRS+NGTF PGYLNQL RMMAFKIPGCN+HAS
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCNIHAS 60

[Close]
BLAST of MELO3C033441 vs. NCBI nr
Match: KAA0065737.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 2.4e-23
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 1  MASTSRLPKHTWTKEEEVGLVELVNVGGWRSNNGTFLPGYLNQLVRMMAFKIPGCNVHAS 60
          M S+SRLPKHTWTKEEE GLVELVN GGWRS+NGTF PGYLNQL RMM FKIPGCN+HAS
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVELVNAGGWRSDNGTFRPGYLNQLARMMTFKIPGCNIHAS 60

[Close]
BLAST of MELO3C033441 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 4.0e-23
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 1  MASTSRLPKHTWTKEEEVGLVELVNVGGWRSNNGTFLPGYLNQLVRMMAFKIPGCNVHAS 60
          M S+SRLPKHTWTKEEE GLVELVNVGGWRS+NGTF PGYLNQL RMMAFKIPG N+HAS
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHAS 60

[Close]
BLAST of MELO3C033441 vs. ExPASy TrEMBL
Match: A0A5D3BSM9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00470 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.7e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MASTSRLPKHTWTKEEEVGLVELVNVGGWRSNNGTFLPGYLNQLVRMMAFKIPGCNVHAS 60
          MASTSRLPKHTWTKEEEVGLVELVNVGGWRSNNGTFLPGYLNQLVRMMAFKIPGCNVHAS
Sbjct: 1  MASTSRLPKHTWTKEEEVGLVELVNVGGWRSNNGTFLPGYLNQLVRMMAFKIPGCNVHAS 60

[Close]
BLAST of MELO3C033441 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.9e-24
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 1   MASTSRLPKHTWTKEEEVGLVELVNVGGWRSNNGTFLPGYLNQLVRMMAFKIPGCNVHAS 60
           M S+SRLPKHTWTKEEE GLVELVN GGWRS+NGTF PGYLNQL RMMAFKIPGCN+HAS
Sbjct: 347 MTSSSRLPKHTWTKEEEAGLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCNIHAS 406

[Close]
BLAST of MELO3C033441 vs. ExPASy TrEMBL
Match: A0A5A7UXH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005580 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.9e-24
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 1  MASTSRLPKHTWTKEEEVGLVELVNVGGWRSNNGTFLPGYLNQLVRMMAFKIPGCNVHAS 60
          M S+SRLPKHTWTKEEE GLVELVN GGWRS+NGTF PGYLNQL RMMAFKIPGCN+HAS
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCNIHAS 60

[Close]
BLAST of MELO3C033441 vs. ExPASy TrEMBL
Match: A0A5A7VF53 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00250 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 1  MASTSRLPKHTWTKEEEVGLVELVNVGGWRSNNGTFLPGYLNQLVRMMAFKIPGCNVHAS 60
          M S+SRLPKHTWTKEEE GLVELVN GGWRS+NGTF PGYLNQL RMM FKIPGCN+HAS
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVELVNAGGWRSDNGTFRPGYLNQLARMMTFKIPGCNIHAS 60

[Close]
BLAST of MELO3C033441 vs. ExPASy TrEMBL
Match: A0A5A7TXK4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00820 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 1  MASTSRLPKHTWTKEEEVGLVELVNVGGWRSNNGTFLPGYLNQLVRMMAFKIPGCNVHAS 60
          M S+SRLPKHTWTKEEE GLVELVNVGGWRS+NGTF PGYLNQL RMMAFKIPG N+HAS
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHAS 60

The following BLAST results are available for this feature:
BLAST of MELO3C033441 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0052248.11.6e-27100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK01812.1 retrotransposon p... [more]
KAA0034843.18.2e-2486.67retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0060663.18.2e-2486.67retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065737.12.4e-2385.00retrotransposon protein [Cucumis melo var. makuwa][more]
XP_008466949.14.0e-2386.67PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo][more]
BLAST of MELO3C033441 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033441 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BSM97.7e-28100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SWD83.9e-2486.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UXH83.9e-2486.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VF531.1e-2385.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TXK42.0e-2386.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C033441 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033441.1MELO3C033441.1mRNA