MELO3C033401 (gene) Melon (DHL92) v4

Overview
NameMELO3C033401
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRibonuclease H
Locationchr08: 24710909 .. 24715699 (+)
RNA-Seq ExpressionMELO3C033401
SyntenyMELO3C033401
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACGAAAGAACCCCAAAAGCACTCCAAACCTAACCCAATTTTCTCCATCTTTACATCTTTTCTTCTTAACGACGGAGACCCATGGCGATGTCGAAGCTAAACGTTTAGAAGACAGTGATCCACACTCGTTTTCTCATTGATGGTGACCCACACTCATTTTAAGGGTATCAACTTTAGATATCTACGTATACCAAACAATCACCTATGCTTTTGTTCCAATTTATTTGATGTCTGTGTTTCCTATGCTTTAGTTCCACCTATATTTCTACGTTTAATTTTTTTTCTTGGTGTTGGTGTGATTCAAAAAATTTCTTCAAACTTGCATGGTTACTAAAGTAGCTAGTAAAAAATAAAAGTCCCGATCAGCGGATTTCCATTGGACTGACAATGGATATGATAGATTTTTTTCTCTTTTGAGCTACCTGTGGTATATTTCTGGAGATGCTTATGGCTCTTGTACTACATCAACTAATATAGAAAGTACTTGTTGAAGATTATAATTATTTTCCAAAATTTATACATCTCCCCCAATTTTTGTTTAATTATCCTACTACGATCTTCTGGGTTACGTTATCGTTGTTCGTAGGCTTTCTTTTTCTTAGGAGAGGTTATTCATTGCTTTATGCCTCCTGAGTATGCTAAAGGACTTCCTCTTGGAGTAATGCAATTTTTATGGGAGTATTGCATGAAGAATCAAATTTGAATCTATATCATTGGACATGGATTTTTCTATATCTTTTCATTATTTATGTGGATCTTTTAGAACTGACATGGCGGCACTCTTACTGTTCCTTATTTTGTTTCTTATCTTTTCCATGTAATGGTAAGATAAGCCTTGTAAGAACTTCATTGATTCATTAATTGCTTTTTAGAAAGAATATGTTGCAGCAACTAAACTTGTTAAAATGAAATTCCCCATCTTTGCAGGTAGAACAAAATATAGAGGAAATGATTTAAGCCATAGGTTTGACAACATTCTCCCCTACAAAAAGGATTCTAGAGGGCAACATGTACCTTATGATAATGAAGTCACATGTTTCTTTCTTTTTTATGTTTCATTTTTTACTCTTTTTTTTAAAAAAATTAAGGAATTGTAGAAAGCTAGGTTCTCAACACACGTGCACACTTATGTTTAAAAGAATATATGAACTACACAATTCTTTTACATGTTGTAATAGCAAAGTTCTTCCCTAATTTCTTTCATTTTGTAATTGAAATTACAGAGTATAGCTCATCTTGGTCACTCAATTGGCATAAATATATTGTCACAGCTCTTGTATGGTATTCTCAAGTTATTTTGAACTAGTTCCAACAAAGGAAGGGTAGGAAGTGATTATGTGATAGAATTATGTATTGAGGGACAAATTTTTATTTGAAGTCCTTGCAAAGTATGTTTATGAGATTTTTCTCACGGAAAAATGGTTCTATGATACTAACGATTCTTTTCCTAAGAGAGTACTTCTTGTTTATTTGTTTAATAAGAGATTACTTCCAATGGACGATTCTATTAGTTCTTGAGCCTTACTTCTAGTTTTTAGGTTTGAAGGCCTTATGTGCTATAATATTTGTATGACTTGAGTTCTTTATTCTACACCCAGTTATCTTTTCATGAGTTTTCAATTTTGATAGACCCTTTTCCCCCTCATTTTTTCAATTTAATTAGTTTGATATAAAGTGTCATATTAGAATAATATGCACAAACATGGTATATTGTGAATTGATATGACTATTCTGCAGTTATGATAGTCTAAATTAGTTCTTGTGATGATTTTGGTACTTATGATTAAAACGTTATGGAGTGTCATTATGATTTTGGTACTTAATGAAGACATGCCCTCCCTCCTTCTCATTGTTTTAGAATGGTTGAGTTTTCAACTTACTCATGCCCCTTTCCCCCTACTCATAGTTTTAGAATGTTTAAGCTTCATCCATTTGAGTAGTGACATTATGGTTTGAAGTGCTAAGTTTCGTTTATTGAGTTCAATCATATTGAATTTGTTGCTTTTGATGTAGACATGCCTCATTTCCTCATTATGGTTTGTTGCTTTTGCTTTAGACATGTCCTCCCCCCTTCCCCCCTTTTAGAATGTTGAAGTTTTATCCATTTGAGTAGTGTCATATTTAAAGTGCCTAAGTTTCATTTTTGTTTACATGTTTTACTTATTTATTCTGTTATGTCACGCATTTCAAATTTGACGCATGAATGTTCTTCTATACAAGATTTTGATGTTGACTTCGGATGAATATGAAGAGTTTTTTGTTTGTATCTTATAATTTTGTTAGGAAAGATCATTTTCATATGATTTCAAGACTTGTAGGAATTTTTTGTTATGCACATTACTTTTGCACAAATGTAACTTGAAGTAACTTCATGGCTAAAACTTTAGAACTAACTTTGGACATCCATTTATTTGATGTAACTTCATATTTATAACTTAGGTTGACATTGCTTGAACTATTTATGAAATTATTGAAGTTTCTTAACATATATTTCTTGTGATAAAGTTGGTGTTATTGCATGTTGCCTAGTGATAGTTCTTAAAATTATTATATTTGACAATTTATAATAGGATTATATAATAAATTGGCCATTATTTTTTTATATAGTAAAATACTTTTAATGGCAGTTTCAATAACGTCACAAAAGAATTGGTTTTCTAAAAAAACTGTAGGAATTTTTAGTGGCACACTTCAATACGTTGCAAAAGATATTTGTAACAATCCAAAACTAATCTTTTTAAGCAACAACATTATTTGTCACTAAAACATCACCTTTAGTGGCGAGTGCAATACGTCACTATAAAAATAAATAGTGAATAACATATGTTACTAAAACTAAGCTTTTAGTAACGCGAAAATGTCACTAAAAGTATATCTTTTGCAGCGCATAATTCTTACGTCGTTAAAACTTTTAGCTATGTGGATTTAGCGACAATCCTAGCGACGAATGGCTCTGCATCGTTAATACTTTTAGCGATGTGTTTTTGCGTTTTAGTGACCTTTTTGGTACACCACTAAAAACGCAATTTCTTGTAGTAGAGATGTTAATGATGATGCAGTCATCATAGTAATCTATACATGGGAATGATTCATGTTTTTGGCAAAAGGAATAGTGGAAGACTAATATGTGTTTTATGTTTTAGTGAAATGAGGCATTGAGAGTCTGTATATGGAAAGGAAAATGTACTTGTTGATTAAATTTTATTCCCAAAAAGGTTTTCAAAGTATCACTGACTAAGTCATCGACTTATGTTTTAAGTTTTCTCCTTCCTCAGGTTGTAAGGCATTAAGGCCGGTTAAGAAGATAAGCTAGCAGACCAGGCGTTTGAAGGTTGAAGGCTATGAAGGTGTTTAAGATTTATTTGTTAAGCTCTTGTATTAAGGAAGTTTGTTTTGTGATTGTAAAACTTATAAGTTTAAGTTAATAAAAGTGTAAGTTGTGTTTGCTTCCGCGGTGTTATGGTTGTGTCCTTTATCGTTTAGTAATTTTAAAGGATTTCGAGTGTTCTGGTTTTTCACATTAAAGGCGCCACGATTGCTCAAGTTGTGTCATGTTCTGTATTGCAAGGTTAAGGATGCATGCGTGGCGGTATGCGATAGTTTCATAGTGTTGAAAGAGGTTAGGGGTATTTGTATTTCTAGAAAACTTAGGTTTAGTTCTTAGAATGTTATTACCATATGTGTAAACTTCCTCTTACCTCCTCTCTTGGTACTCCTATTCCAAGCATTGTTGTGATTTTTTTTTTTATGCTTTCTTATAATATTTATCAAATATATGTTATCAAACTATAGTAAACAACCACGAATCCATCAGTCTAGTATTTTATCTTTTGTTAATTAACAAGGATTCGGTACAACTTATTATATTTGCAAACCACGTAAAAACTATGATTTTCTTTTATTAAGACTTAAGGAAATATAGGTGTCTACAAGTCCAGGAAAAGTTTTCTACGATTGTGAGTTTCCACAATTGGAAGTATACATCCTAAAAGGATTCACGTTTTGTGAAGCCTAAGACTAAGACAAATTTTGGTCTTTACAACATAGTGTAGTTTTTCGCAGTTTTGATTTGTTTGTTTGATACGAAGGGTGGTGAATTTCGCAGCTCAAAAAGCTTTCATGATACATATGTCTTATTTTATCCTATGACCATGCTAATCAATTGTTAATAGGATTGGTAAAATGGAGTAGTGAGCTATTTATTTCTTTGAAAAGCACAATATTTTATTTTAAAATTAAATTTTAACTCAGTTTAAAAGTAAGATGAGTCCATTATTTATCAAACCTATCCCTGGAGCTAAGGTTGATGTCTTTTCAAGTTTAGTTAAATTAAGCCCAAATCTGAAGTTGAGGCTGAAGTCTGTCTATCAGGTCCATTATTTAATTATCAACCTTAGCTTTGGAACTAAGGTTGATGTCTTTTCAAATTTGGTTAAATCAAGCCCAAATTGAAAGTTGAGGTCGAAGCCTATCTATCTAGTCCATTATTTATCAAACCTAGCCTTGGAGTTAAGTTTGATATCCTTGAGCATTTGATAGTTTTTTTCTTTCTCTTTCTAAAAAATATCTAAAAAATAAAAAAAAAAAGTTCAAACCCACATACCTTATCTATTTCTTTGTCCACCTTTAAATATTTTTACAAGGGAGGAAGCTGTAGATATCATAGTTTGTCCTTTATATTTATATGTATTTACTTTATTTTATAGGGTTTTTCAAAAATAGAAAAAATCGACAAAATATTTACATTCCATAGAACCAAACCACTAAAAGACAAAACTTATTACACTTGA

mRNA sequence

CCACGAAAGAACCCCAAAAGCACTCCAAACCTAACCCAATTTTCTCCATCTTTACATCTTTTCTTCTTAACGACGGAGACCCATGGCGATGTCGAAGCTAAACGTTTAGAAGACAGTGATCCACACTCGTTTTCTCATTGATGGTGACCCACACTCATTTTAAGGGTAGAACAAAATATAGAGGAAATGATTTAAGCCATAGGTTTGACAACATTCTCCCCTACAAAAAGGATTCTAGAGGGCAACATAGTATAGCTCATCTTGGTCACTCAATTGGCATAAATATATTGTCACAGCTCTTGTATGACATGCCTCATTTCCTCATTATGCTATGTGGATTTAGCGACAATCCTAGCGACGAATGGCTCTGCATCGTTAATACTTTTAGCGATGCGCCACGATTGCTCAAGTTGTGTCATGTTCTGTATTGCAAGGTTAAGGATGCATGCGTGGCGGTATGCGATAGTTTCATAGTGTTGAAAGAGGTGTCTACAAGTCCAGGAAAAGTTTTCTACGATTGTGAGTTTCCACAATTGGAATTTAAAAGTAAGATGAGTCCATTATTTATCAAACCTATCCCTGGAGCTAAGGTTGATGTCTTTTCAAGTTTAGTTAAATTAAGCCCAAATCTGAAGTTGAGGCTGAAGTCTGTCTATCAGGGTTTTTCAAAAATAGAAAAAATCGACAAAATATTTACATTCCATAGAACCAAACCACTAAAAGACAAAACTTATTACACTTGA

Coding sequence (CDS)

ATGGTGACCCACACTCATTTTAAGGGTAGAACAAAATATAGAGGAAATGATTTAAGCCATAGGTTTGACAACATTCTCCCCTACAAAAAGGATTCTAGAGGGCAACATAGTATAGCTCATCTTGGTCACTCAATTGGCATAAATATATTGTCACAGCTCTTGTATGACATGCCTCATTTCCTCATTATGCTATGTGGATTTAGCGACAATCCTAGCGACGAATGGCTCTGCATCGTTAATACTTTTAGCGATGCGCCACGATTGCTCAAGTTGTGTCATGTTCTGTATTGCAAGGTTAAGGATGCATGCGTGGCGGTATGCGATAGTTTCATAGTGTTGAAAGAGGTGTCTACAAGTCCAGGAAAAGTTTTCTACGATTGTGAGTTTCCACAATTGGAATTTAAAAGTAAGATGAGTCCATTATTTATCAAACCTATCCCTGGAGCTAAGGTTGATGTCTTTTCAAGTTTAGTTAAATTAAGCCCAAATCTGAAGTTGAGGCTGAAGTCTGTCTATCAGGGTTTTTCAAAAATAGAAAAAATCGACAAAATATTTACATTCCATAGAACCAAACCACTAAAAGACAAAACTTATTACACTTGA

Protein sequence

MVTHTHFKGRTKYRGNDLSHRFDNILPYKKDSRGQHSIAHLGHSIGINILSQLLYDMPHFLIMLCGFSDNPSDEWLCIVNTFSDAPRLLKLCHVLYCKVKDACVAVCDSFIVLKEVSTSPGKVFYDCEFPQLEFKSKMSPLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIEKIDKIFTFHRTKPLKDKTYYT
Homology
[Close]
BLAST of MELO3C033401 vs. NCBI nr
Match: KAA0067952.1 (uncharacterized protein E6C27_scaffold138G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 7.4e-05
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 124 FYDCEFPQLEFKSK---MSPLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE 180
           F + + P+ E +++     PLFIKP P AKVDVFS+LVK SP+LKLRLK VYQ  S+ E
Sbjct: 709 FREGDLPRSEAEAEACLSGPLFIKPSPRAKVDVFSNLVKSSPDLKLRLKPVYQPRSEAE 767

[Close]
BLAST of MELO3C033401 vs. NCBI nr
Match: TYK03242.1 (putative integrase [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 9.7e-05
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 140 PLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE 180
           PLFIKP PGAKVDVF +LVK SP+LKLRLK VYQ  S+ E
Sbjct: 132 PLFIKPSPGAKVDVFLNLVKSSPDLKLRLKLVYQPKSEAE 171

[Close]
BLAST of MELO3C033401 vs. NCBI nr
Match: KAA0042506.1 (putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 9.7e-05
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 139 SPLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE 180
           SPLFIKP PGAKVD FS+LVK SP+LKLR K VYQ  S+ E
Sbjct: 282 SPLFIKPSPGAKVDAFSNLVKSSPDLKLRPKPVYQPRSEAE 322

[Close]
BLAST of MELO3C033401 vs. NCBI nr
Match: KAA0036934.1 (uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-04
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 140 PLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE 180
           PLFIKP P AKVDVFS+LVK SP+LKLR K VYQ  S++E
Sbjct: 852 PLFIKPSPRAKVDVFSNLVKSSPDLKLRPKPVYQPRSEVE 891

[Close]
BLAST of MELO3C033401 vs. ExPASy TrEMBL
Match: A0A5A7VHZ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001360 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-05
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 124 FYDCEFPQLEFKSK---MSPLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE 180
           F + + P+ E +++     PLFIKP P AKVDVFS+LVK SP+LKLRLK VYQ  S+ E
Sbjct: 709 FREGDLPRSEAEAEACLSGPLFIKPSPRAKVDVFSNLVKSSPDLKLRLKPVYQPRSEAE 767

[Close]
BLAST of MELO3C033401 vs. ExPASy TrEMBL
Match: A0A5D3BWN6 (Putative integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00590 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-05
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 140 PLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE 180
           PLFIKP PGAKVDVF +LVK SP+LKLRLK VYQ  S+ E
Sbjct: 132 PLFIKPSPGAKVDVFLNLVKSSPDLKLRLKLVYQPKSEAE 171

[Close]
BLAST of MELO3C033401 vs. ExPASy TrEMBL
Match: A0A5A7TKN3 (Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00600 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-05
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 139 SPLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE 180
           SPLFIKP PGAKVD FS+LVK SP+LKLR K VYQ  S+ E
Sbjct: 282 SPLFIKPSPGAKVDAFSNLVKSSPDLKLRPKPVYQPRSEAE 322

[Close]
BLAST of MELO3C033401 vs. ExPASy TrEMBL
Match: A0A5A7T0A1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00070 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 140 PLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE 180
           PLFIKP P AKVDVFS+LVK SP+LKLR K VYQ  S++E
Sbjct: 852 PLFIKPSPRAKVDVFSNLVKSSPDLKLRPKPVYQPRSEVE 891

[Close]
BLAST of MELO3C033401 vs. ExPASy TrEMBL
Match: A0A5D3DAC8 (Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00320 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.2e-04
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 140 PLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQ 174
           PLFIKP P AKVDVFS+LVKLSP+LKLR K VY+
Sbjct: 283 PLFIKPSPRAKVDVFSNLVKLSPDLKLRSKPVYR 316

The following BLAST results are available for this feature:
BLAST of MELO3C033401 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067952.17.4e-0555.93uncharacterized protein E6C27_scaffold138G001360 [Cucumis melo var. makuwa][more]
TYK03242.19.7e-0575.00putative integrase [Cucumis melo var. makuwa][more]
KAA0042506.19.7e-0573.17putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cu... [more]
KAA0036934.12.8e-0472.50uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa][more]
BLAST of MELO3C033401 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033401 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VHZ03.6e-0555.93Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BWN64.7e-0575.00Putative integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G0... [more]
A0A5A7TKN34.7e-0573.17Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=... [more]
A0A5A7T0A11.4e-0472.50Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00070 ... [more]
A0A5D3DAC85.2e-0479.41Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=... [more]
BLAST of MELO3C033401 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033401.1MELO3C033401.1mRNA