MELO3C033386 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033386
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CLP protease regulatory subunit CLPX2, mitochondrial isoform X1
Location	chr08: 23274926 .. 23275639 (-)
RNA-Seq Expression	MELO3C033386
Synteny	MELO3C033386

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTCTTGTTATTCCTTGTTTAAGTGGCAGTTTGGTTTGGGTCAAAATGGAAGTAGAAAGATGCAAAATAGCGAAGACGCTTTACTGTATTTGATTCAACAAAGAATCCTTCCGTATAGAAGACGTGGAAGCTTGAAAGATCTTGACATTATCAGACACTCAACTCAAATGCTTCTTGAAGGAGATTTCAAAATTCTTGCATGACTTTAAGAATGGTTTTCTTCTTCAAAACGGTTTTGATGATTTTGGAAATACAAGGCTCTTAAAATTTATGTGAAAAGTAGGTTAGGTTATCAGGTATGTGGCTTGGAAGAGGAACAAAAAACTATCCTTCATCCATACATTGTTCTGGTGTCTCTCGACAGGGTTGGAGATGTTTTCCAAAAATATTAGGAAGTTTCTTGATGAAGCACGATTATTCGATTTGGTACAGAAAACATCTCCAGACCTCCTTGCAACCTCCTTCCGAGTCACTAAGGGCAAGTTATGCTGAAAAGATGATGCTTAATGGATCCTCTGTTCAGGAATTGGTAAAACATAGCACTTCTTCCTTTGTTCTGACCTTAGTAATTCAAAGTACAACTCAACATTGGGTGATTAAAAATCCGAAAGTTTTAAAAGAAGACTTCGATAATATATGGATTATTTCAAGATTATTTGCATTTGATGATTGGAAGAAAATTAGAAAAACCTTGGAGGATCTTTTACAATAA

mRNA sequence

TTGTTCTTGTTATTCCTTGTTTAAGTGGCAGTTTGGTTTGGGTCAAAATGGAAGTAGAAAGATGCAAAATAGCGAAGACGCTTTACTGTATTTGATTCAACAAAGAATCCTTCCGTATAGAAGACGTGGAAGCTTGAAAGATCTTGACATTATCAGACACTCAACTCAAATGCTTCTTGAAGGAGATTTCAAAATTCTTGCATGACTTTAAGAATGGTTTTCTTCTTCAAAACGGTTTTGATGATTTTGGAAATACAAGGCTCTTAAAATTTATGTGAAAAGTAGGTTAGGTTATCAGGTATGTGGCTTGGAAGAGGAACAAAAAACTATCCTTCATCCATACATTGTTCTGGTGTCTCTCGACAGGGTTGGAGATGTTTTCCAAAAATATTAGGAAGTTTCTTGATGAAGCACGATTATTCGATTTGGTACAGAAAACATCTCCAGACCTCCTTGCAACCTCCTTCCGAGTCACTAAGGGCAAGTTATGCTGAAAAGATGATGCTTAATGGATCCTCTGTTCAGGAATTGGTAAAACATAGCACTTCTTCCTTTGTTCTGACCTTAGTAATTCAAAGTACAACTCAACATTGGGTGATTAAAAATCCGAAAGTTTTAAAAGAAGACTTCGATAATATATGGATTATTTCAAGATTATTTGCATTTGATGATTGGAAGAAAATTAGAAAAACCTTGGAGGATCTTTTACAATAA

Coding sequence (CDS)

ATGTGGCTTGGAAGAGGAACAAAAAACTATCCTTCATCCATACATTGTTCTGGTGTCTCTCGACAGGGTTGGAGATGTTTTCCAAAAATATTAGGAAGTTTCTTGATGAAGCACGATTATTCGATTTGGTACAGAAAACATCTCCAGACCTCCTTGCAACCTCCTTCCGAGTCACTAAGGGCAAGTTATGCTGAAAAGATGATGCTTAATGGATCCTCTGTTCAGGAATTGGTAAAACATAGCACTTCTTCCTTTGTTCTGACCTTAGTAATTCAAAGTACAACTCAACATTGGGTGATTAAAAATCCGAAAGTTTTAAAAGAAGACTTCGATAATATATGGATTATTTCAAGATTATTTGCATTTGATGATTGGAAGAAAATTAGAAAAACCTTGGAGGATCTTTTACAATAA

Protein sequence

MWLGRGTKNYPSSIHCSGVSRQGWRCFPKILGSFLMKHDYSIWYRKHLQTSLQPPSESLRASYAEKMMLNGSSVQELVKHSTSSFVLTLVIQSTTQHWVIKNPKVLKEDFDNIWIISRLFAFDDWKKIRKTLEDLLQ

Homology

[Close]

BLAST of MELO3C033386 vs. NCBI nr
Match: TYK07808.1 (CLP protease regulatory subunit CLPX2 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-17
Identity = 51/76 (67.11%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 23  GWRCFPKILGSFLMKHDYSIWYRKHLQTSLQPPSESLRASYAEKMMLNGSSVQELVKHST 82
           G + F K L  FLMK DYSIWYRKH QTSLQ PSESL  SY EK+M NGSSV+ELVK + 
Sbjct: 62  GLKSFHKTLERFLMKQDYSIWYRKHPQTSLQLPSESLGGSYVEKVMFNGSSVRELVKQTA 121

Query: 83  SSFVLTLVIQSTTQHW 99
           SS +LT   QS TQHW
Sbjct: 122 SSSILTSEFQSATQHW 137

[Close]

BLAST of MELO3C033386 vs. NCBI nr
Match: KAA0039127.1 (angio-associated migratory cell protein isoform X1 [Cucumis melo var. makuwa] >TYK26986.1 angio-associated migratory cell protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 40/133 (30.08%), Postives = 68/133 (51.13%), Query Frame = 0


Query: 16  CSGVSRQGWRCFPKILGSFLMKHDYSIWYRKHLQTSLQPP-------SESLRASY----- 75
           CS   + GW  FP ++  F+ + +Y  W+  +   +  P        +E ++ SY     
Sbjct: 289 CSRERQHGWLLFPNMMAKFIERLNYIEWFASNAPMTPSPRLLEKQSYAEKVKLSYSNELK 348

Query: 76  --AEKMMLNGSSVQELVKHSTS-SFVLTLVIQSTTQHWVIKNPKVLKEDFDNIWIISRLF 134
             +E+M +N +  Q+ VK  T   +  +       + WVIKN +V+   F+ +WI+++LF
Sbjct: 349 EKSEQMKVNQALRQQEVKQVTGLPYTYSTPKVEYQKQWVIKNLEVVPTYFEQLWIVTKLF 408

[Close]

BLAST of MELO3C033386 vs. NCBI nr
Match: TYK08108.1 (protein ENHANCED DOWNY MILDEW 2 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 7.1e-07
Identity = 40/124 (32.26%), Postives = 61/124 (49.19%), Query Frame = 0


Query: 21  RQGWRCFPKILGSFLMKHDYSIWYRKHLQTSLQPPSESL--RASYAEKMMLNGSS----- 80
           +QGW  F  ++G F  + DY  W+  ++    + PS  L  + SYAEK+ L+ S      
Sbjct: 62  KQGWLLFRNMMGKFRERMDYIKWFAGNVS---KTPSLRLIEKQSYAEKVKLSFSKESKEK 121

Query: 81  -----------VQELVKHSTSSFVLTLVIQSTTQHWVIKNPKVLKEDFDNIWIISRLFAF 127
                       QE+ + S  ++          +HWVIKN  V   +FD +WI++ LFAF
Sbjct: 122 AEQMRVIPMQRQQEVKQGSPLTYTNRKAKAENQKHWVIKNIDVAPTNFDPLWIVTELFAF 181

[Close]

BLAST of MELO3C033386 vs. NCBI nr
Match: XP_016902573.1 (PREDICTED: CLP protease regulatory subunit CLPX2, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 4.6e-06
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 23  GWRCFPKILGSFLMKHDYSIWYRKHLQTSLQPPSESLRASYAEK 67
           G + F K+L  FLMKHDYSIWY KHLQTSLQ  S+SL A YAEK
Sbjct: 322 GCKSFHKMLERFLMKHDYSIWYVKHLQTSLQLLSKSLGACYAEK 365

[Close]

BLAST of MELO3C033386 vs. NCBI nr
Match: XP_016902575.1 (PREDICTED: CLP protease regulatory subunit CLPX2, mitochondrial isoform X6 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 4.6e-06
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 23  GWRCFPKILGSFLMKHDYSIWYRKHLQTSLQPPSESLRASYAEK 67
           G + F K+L  FLMKHDYSIWY KHLQTSLQ  S+SL A YAEK
Sbjct: 241 GCKSFHKMLERFLMKHDYSIWYVKHLQTSLQLLSKSLGACYAEK 284

[Close]

BLAST of MELO3C033386 vs. ExPASy TrEMBL
Match: A0A5D3C9F1 (CLP protease regulatory subunit CLPX2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001020 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.7e-18
Identity = 51/76 (67.11%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 23  GWRCFPKILGSFLMKHDYSIWYRKHLQTSLQPPSESLRASYAEKMMLNGSSVQELVKHST 82
           G + F K L  FLMK DYSIWYRKH QTSLQ PSESL  SY EK+M NGSSV+ELVK + 
Sbjct: 62  GLKSFHKTLERFLMKQDYSIWYRKHPQTSLQLPSESLGGSYVEKVMFNGSSVRELVKQTA 121

Query: 83  SSFVLTLVIQSTTQHW 99
           SS +LT   QS TQHW
Sbjct: 122 SSSILTSEFQSATQHW 137

[Close]

BLAST of MELO3C033386 vs. ExPASy TrEMBL
Match: A0A5D3DTH3 (Angio-associated migratory cell protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00580 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.3e-09
Identity = 40/133 (30.08%), Postives = 68/133 (51.13%), Query Frame = 0


Query: 16  CSGVSRQGWRCFPKILGSFLMKHDYSIWYRKHLQTSLQPP-------SESLRASY----- 75
           CS   + GW  FP ++  F+ + +Y  W+  +   +  P        +E ++ SY     
Sbjct: 289 CSRERQHGWLLFPNMMAKFIERLNYIEWFASNAPMTPSPRLLEKQSYAEKVKLSYSNELK 348

Query: 76  --AEKMMLNGSSVQELVKHSTS-SFVLTLVIQSTTQHWVIKNPKVLKEDFDNIWIISRLF 134
             +E+M +N +  Q+ VK  T   +  +       + WVIKN +V+   F+ +WI+++LF
Sbjct: 349 EKSEQMKVNQALRQQEVKQVTGLPYTYSTPKVEYQKQWVIKNLEVVPTYFEQLWIVTKLF 408

[Close]

BLAST of MELO3C033386 vs. ExPASy TrEMBL
Match: A0A5D3CA98 (Protein ENHANCED DOWNY MILDEW 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002720 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.4e-07
Identity = 40/124 (32.26%), Postives = 61/124 (49.19%), Query Frame = 0


Query: 21  RQGWRCFPKILGSFLMKHDYSIWYRKHLQTSLQPPSESL--RASYAEKMMLNGSS----- 80
           +QGW  F  ++G F  + DY  W+  ++    + PS  L  + SYAEK+ L+ S      
Sbjct: 62  KQGWLLFRNMMGKFRERMDYIKWFAGNVS---KTPSLRLIEKQSYAEKVKLSFSKESKEK 121

Query: 81  -----------VQELVKHSTSSFVLTLVIQSTTQHWVIKNPKVLKEDFDNIWIISRLFAF 127
                       QE+ + S  ++          +HWVIKN  V   +FD +WI++ LFAF
Sbjct: 122 AEQMRVIPMQRQQEVKQGSPLTYTNRKAKAENQKHWVIKNIDVAPTNFDPLWIVTELFAF 181

[Close]

BLAST of MELO3C033386 vs. ExPASy TrEMBL
Match: A0A1S4E3L9 (CLP protease regulatory subunit CLPX2, mitochondrial isoform X6 OS=Cucumis melo OX=3656 GN=LOC103499373 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 23  GWRCFPKILGSFLMKHDYSIWYRKHLQTSLQPPSESLRASYAEK 67
           G + F K+L  FLMKHDYSIWY KHLQTSLQ  S+SL A YAEK
Sbjct: 241 GCKSFHKMLERFLMKHDYSIWYVKHLQTSLQLLSKSLGACYAEK 284

[Close]

BLAST of MELO3C033386 vs. ExPASy TrEMBL
Match: A0A1S4E2W3 (CLP protease regulatory subunit CLPX2, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499373 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 23  GWRCFPKILGSFLMKHDYSIWYRKHLQTSLQPPSESLRASYAEK 67
           G + F K+L  FLMKHDYSIWY KHLQTSLQ  S+SL A YAEK
Sbjct: 294 GCKSFHKMLERFLMKHDYSIWYVKHLQTSLQLLSKSLGACYAEK 337

The following BLAST results are available for this feature:

BLAST of MELO3C033386 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07808.1	1.2e-17	67.11	CLP protease regulatory subunit CLPX2 [Cucumis melo var. makuwa]	[more]
KAA0039127.1	1.3e-08	30.08	angio-associated migratory cell protein isoform X1 [Cucumis melo var. makuwa] >T...	[more]
TYK08108.1	7.1e-07	32.26	protein ENHANCED DOWNY MILDEW 2 [Cucumis melo var. makuwa]	[more]
XP_016902573.1	4.6e-06	70.45	PREDICTED: CLP protease regulatory subunit CLPX2, mitochondrial isoform X1 [Cucu...	[more]
XP_016902575.1	4.6e-06	70.45	PREDICTED: CLP protease regulatory subunit CLPX2, mitochondrial isoform X6 [Cucu...	[more]

BLAST of MELO3C033386 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033386 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9F1	5.7e-18	67.11	CLP protease regulatory subunit CLPX2 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3DTH3	6.3e-09	30.08	Angio-associated migratory cell protein isoform X1 OS=Cucumis melo var. makuwa O...	[more]
A0A5D3CA98	3.4e-07	32.26	Protein ENHANCED DOWNY MILDEW 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S4E3L9	2.2e-06	70.45	CLP protease regulatory subunit CLPX2, mitochondrial isoform X6 OS=Cucumis melo ...	[more]
A0A1S4E2W3	2.2e-06	70.45	CLP protease regulatory subunit CLPX2, mitochondrial isoform X2 OS=Cucumis melo ...	[more]

BLAST of MELO3C033386 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033386.1	MELO3C033386.1	mRNA