MELO3C033350 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033350
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Reverse transcriptase
Location	chr08: 20173042 .. 20177357 (-)
RNA-Seq Expression	MELO3C033350
Synteny	MELO3C033350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAAGAAGACAAGGAGTTTGCAAGACAAACTTCTCTATAGTTCATTAAGCACAATTCTGGTGTTTTGATCGGTTTAAGCTACATAAAACGAATTAAGAGGTGAGGTTTAAATTTACTAAAAGCTAATTCATTTTTGAAAATTTTTTTATGAATAAATCTTGAGCAAAGCTGATGTTCATTGGGTGAATTTTGACATAGAAGACAGGGCAGATTGTTTTCACGCGAAATTAGGAGATTTCTGGTTTTATTAGTATTTCAGGGTGTACCGGTTGAGTTAGAATCTCTATATTGATATGATTTGAAAGCTTATTCAATTTACTACAACCTTCATGAAGAAATCGTGAACAAAAAACGACTGAAAATATGTTAAATTGTAGGGACAAGTTAAAGGGGATCGTGGTGTACGCGATTGTTGGAGTGGTTCTGTTTTGAGGGACGTCTGAGATTATACACAGGGAATCAGATTTACATGTCTTGAGGTAAAATTTAGAGGACCTCAAAGTGAAGATTTTGACATAAAGAACTCTTATTTTGGTTAAGTATTGGAAGAGTTATGATCATTTGAATGTCATGCTGCAAATCTGGAAAATTTTGAGAAATGTGTGGAATATGGTTTTATTTCTTAAAGTTAGACTTCTTAAGCATCATCTTTAGTGAGCCATATCAAGCATAACATTTGAAGATCATAATATTTAAGTTTCTAATACTTTTTTTTGGTGCTTTGGCAGGCCAAGAGGAAATAGGTCGAATTTACACACCCGAAAACTAGTCTAAGACTGTGAGTGACAAAAACAAGTTTTGAAAATTATTCTTTTTTAAAAAAACTGTTTCTTATAACTAAATGTTTAACATGCTTGACTACGAGTTTATAAATGATATATGATTTCTATTTTTAGTTTTCAAGTATGAGTTTCGAGCTTAGATCTCATAATGGAATCCACGTGTTAGCACGTAATTAATGAGTTCTGAAAAGTAGTTGAAATGGTATTTGTTTAAGAAAAGCATAGTTTAAGCAAGAATTACTTTAAGATTTTCGGTTTCCATAAACAAGCTAAGTAAGTTTGAGTTTATGCAAGATTAATATAAGTATACATGTTTTAATGTTTTCATATGCTTTCCATTGACTACATGACTGAGATCTTGAGCCTGAGGCTATAGGATATTGTGTGCACACAGGTTACGTTCCGTTGTTGACGTTGAGTGTACTCTGTGACAACGATGCTGTCGTGAGTGCTAGGCAAGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCAGGCCCCACTACATCGTAGAACTAGTAAAAATTGGTTGTATTGGACGTGCCCTGCACAACGTAATGAAATCATGTTAGTTAAATAGTTTATAAACAGGAAATGTCTTGCTAGATTTTATAGATATACGTATTGAATGTTTGAAGGAGCTGTTTTCTGAAAATATTTACAGTTAACGATTTGTTTGTTAGATTTATAAGTTTTCAATGATTATCATGAGTTTTGAATTATAGTTTTAAAGTATTGTCACTCACTAGGCTTCATAGTTCACCCTTGCAAAATGTTTTACCCACTTTCCAGGTAGAGATCGAGTTTCCGATGCCTGATAGACTGCCTTAGTCTGCTGAAGATTCGATATCGATTGCGAGTACGTGGTTAGAGTTGTGTATAGAGTATGTTGTGTTATGATGTATATATCTGTATATGATATAGATACTCTACAGTTTGTGTAAGTTTTAGAAGTTGCGGTTGTGTAAACCTTTGTTGGTTATGTTTTGGTTAAGGTGTCTCTAGATTTACTTGCGGAATCAGTTATTTCTGGGCTACACTTCATGTATGTATATGATTAGTCTATGTTCCGCTTTGTTGTGTTGCATGTATAATAGTTTATATACTAGATTAGCAAGTTTATCATGTTAATGAATTCAGCAGAGTTGACAGATATCGGTAAAGAAAATCGTTGTCGGTCGGCTTCATGTCGTCTTTTCGTCTAAGCTAGCAGGTAGTCTGGGAGAGGGTGTGACAAACAATCGTTTTCACAAGCATGAATCTTTTCATATCATAACTCAAATACTTTTAAGAACTTCTTTACTGCATAAGTAGATTTTCGGATAACATTGTTAGGAGGTAGCATATCGTTCAAAGACTCTAAAAGGCTTGTGAAACTTTTATCGGTCCAATCGTTAGTAGCCTTTATCTTATATATTGATACCACAACTGACAATCTTCTATATTTTGTACAATGAGGATATAATGAAGTGTTTGCATCTATGACCTTTTGATTAACATCACTATTTATGAATGGTTCATCAACTTTTTCGTTGCTCATGAAAGAAGTACTACAAAAGGGTTGACCATCAAACATACACTCTACCAATACTTCTTCACCATGATGGTATCAAAACCTATAAGTAGGATCCATACCTTTTATAACTAAATGTTCATATACAACATCAAAGGTTTGATGATTCATGTTCCTACATGTCTTGCATGGACATGAAATTTTGTCTACTCCACCCAACGTGTTCTCTACTTGTTTCACAAAGTTTCATGCTCCCCTCAGATATTATTGGTTGCTCTATTAGAAAGATCCAAGTTTGCAATTAATATAACTAACTATATTAATCTATTTTAGTTAGCTAAAAATTTATTCCCTTACCTGTTCAAATGAACCCAATCTTTTTGAAACATTATATCTTCAAATTATTGCTATAAGAATGTGAAATATAATTAAGAACCAACTCTACCCAAAGAGAAATTGATAATACTAGCATGCGAAGGTAACATCAACAAAGTAATAATCACCATTAACACCAATAGAGTAATAGTCACCATCACCATTTAAAAAAACTAACATTACAATGACAAATAAGCAAAGACTAAAAAAAAAAAATATCTTAACCAATAATATGCAAATATCCACATTTATGCACAAATAAAAATCCATGAACTTTAAAAATAATAATGCTTGAGAGGTTGAGATCTTACCTTAACTAGAAGCTTAAAAAAGATAAAGATTCTTCAACCCAAACTTCAATGTTACCAATCCAGCTCGATCAATGGTAAGAGATTTAGTTTCTGGATCTAAGTTGATATTAGTTATAGTTGAGGGACAAGGCTACAATCAGAACACAAGAAAAGTATCATATGGTTGTAACTTATAAAATAATTTTTTTACCTTGGCTTTCTTTTACAACTCAACCACAAGTTTTTCTCTCTCTCCTGACCTCTTCTCTATTTAAGAAATCAGAAAAGGAAAAATTATAAGACTTTAAATTCAAGTGCAATCATGATATCTAAAAGAATAATACAAAATAAGTTACAGAACTTCCATAAAACTCACAACATGCATTTTTATCCAATAAAAAACTAAAATAAAGGAGAACATAGAATTTTGCTGAAGCAAGACAATGCCTACATCTCACTGTTAGGTTTTACTTTAATCATAATACCATCAGCTCCACCTAAAAGACTAAAATAAAGATGCCTCGTAAATTATGTTAATAATGCATTTAGTACCTTCCTCTTGATGTTCTAAACTAATCAAAATATAAATCTTTTTAGTACACCATATGAACAACCATGAGAATGCAATGTCCACAATAAATATCTGGTGAGTTGCTTTGTTGTGCTATTAAGAATGTTTGTGTGTGTGTGGTTTTCTTGATCTTGCTTTTTCGGTAGTATGTGAATGCTATATATTACTACTTTATCTGTAGCCTTTCTTTGCTTTTCAATGCCAGAAATAAGATAGAAAAAAAAAACTCACCATAAATAACCTACTAATATATTCATCACAAACATCAAATAACCAGAAACAGAAACAAGATAGACGAGTCAAAGAATAGACAAATTAGGCTGACGATAAGATGATTGAGCATACCAAATGAAGATGGATTGATCATTCGAAAGAGCCCTCTGCGTCAACTTATGCTACTATACCTTATTATTTCGAGATAGGTAAGGCTTGGGGACTTAGAGAGATTGGAGAACCCCTTAAATATTAGCTTGACCTGAAGGAGCTTAGAATGAAGGTGATGGTTGAAGACAGAAGAGAACGGAGAAGATGAGGTCGATCGGAGATATGGTTGGAATGAGGAGAACGGAGAAGAAGAGAATGAAGAAGATCGATGAGGTCAGAGATGTGGTTGGAATGAAGAGAACAGAGAAGAAAAGAACGGATCGAAGAAGATGAGGTGGATAGGAGATGTGGTTGGAACGAAGAGAATAAGAAGAAGAGAACAGAAAAGATCGATGAGGTCGAAGATGTGGTTGGAACGAAGAGAACGGAGAACAAGAGAAAGGATCGGAGAAGATGA

mRNA sequence

ATGTTTAAGAAGACAAGGAGTTTGCAAGACAAACTTCTCTATAGTTCATTAAGCACAATTCTGTTTTCAAGTATGAGTTTCGAGCTTAGATCTCATAATGGAATCCACGTGTTAGCACGTTACGTTCCGTTGTTGACGTTGAGTGTACTCTGTGACAACGATGCTGTCGTGAGTGCTAGGCAAGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCAGGCCCCACTACATCACAGAAGAGAACGGAGAAGATGAGGTCGATCGGAGATATGGTTGGAATGAGGAGAACGGAGAAGAAGAGAATGAAGAAGATCGATGAGAGAAGAAAAGAACGGATCGAAGAAGATGAGGTGGATAGGAGATGTGGTTGGAACGAAGAGAATAAGAAGAAGAGAACAGAAAAGATCGATGAGGTCGAAGATGTGGTTGGAACGAAGAGAACGGAGAACAAGAGAAAGGATCGGAGAAGATGA

Coding sequence (CDS)

ATGTTTAAGAAGACAAGGAGTTTGCAAGACAAACTTCTCTATAGTTCATTAAGCACAATTCTGTTTTCAAGTATGAGTTTCGAGCTTAGATCTCATAATGGAATCCACGTGTTAGCACGTTACGTTCCGTTGTTGACGTTGAGTGTACTCTGTGACAACGATGCTGTCGTGAGTGCTAGGCAAGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCAGGCCCCACTACATCACAGAAGAGAACGGAGAAGATGAGGTCGATCGGAGATATGGTTGGAATGAGGAGAACGGAGAAGAAGAGAATGAAGAAGATCGATGAGAGAAGAAAAGAACGGATCGAAGAAGATGAGGTGGATAGGAGATGTGGTTGGAACGAAGAGAATAAGAAGAAGAGAACAGAAAAGATCGATGAGGTCGAAGATGTGGTTGGAACGAAGAGAACGGAGAACAAGAGAAAGGATCGGAGAAGATGA

Protein sequence

MFKKTRSLQDKLLYSSLSTILFSSMSFELRSHNGIHVLARYVPLLTLSVLCDNDAVVSARQAPLRQRRWECWAGPTTSQKRTEKMRSIGDMVGMRRTEKKRMKKIDERRKERIEEDEVDRRCGWNEENKKKRTEKIDEVEDVVGTKRTENKRKDRRR

Homology

[Close]

BLAST of MELO3C033350 vs. NCBI nr
Match: KAA0033241.1 (hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK20418.1 hypothetical protein E5676_scaffold590G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-07
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 37 VLARYVPLLTLSVLCDNDAVVSARQAPLRQRRWECWAGPTTS 79
          V   YV LLTL+VL DNDA+VSA + PLRQR+WECWA PTTS
Sbjct: 28 VYTGYVSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69

[Close]

BLAST of MELO3C033350 vs. NCBI nr
Match: KAA0037581.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-06
Identity = 31/36 (86.11%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 43  PLLTLSVLCDNDAVVSARQAPLRQRRWECWAGPTTS 79
           PL TLSVL DNDAVVSA QAPLRQRRWEC  GPTTS
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]

BLAST of MELO3C033350 vs. NCBI nr
Match: TYK03091.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-06
Identity = 31/36 (86.11%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 43  PLLTLSVLCDNDAVVSARQAPLRQRRWECWAGPTTS 79
           PL TLSVL DNDAVVSA QAPLRQRRWEC  GPTTS
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]

BLAST of MELO3C033350 vs. ExPASy TrEMBL
Match: A0A5A7SUV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold590G00130 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-07
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 37 VLARYVPLLTLSVLCDNDAVVSARQAPLRQRRWECWAGPTTS 79
          V   YV LLTL+VL DNDA+VSA + PLRQR+WECWA PTTS
Sbjct: 28 VYTGYVSLLTLNVLRDNDAIVSAGRVPLRQRQWECWASPTTS 69

[Close]

BLAST of MELO3C033350 vs. ExPASy TrEMBL
Match: A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.7e-07
Identity = 31/36 (86.11%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 43  PLLTLSVLCDNDAVVSARQAPLRQRRWECWAGPTTS 79
           PL TLSVL DNDAVVSA QAPLRQRRWEC  GPTTS
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]

BLAST of MELO3C033350 vs. ExPASy TrEMBL
Match: A0A5A7T7M6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002250 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.7e-07
Identity = 31/36 (86.11%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 43  PLLTLSVLCDNDAVVSARQAPLRQRRWECWAGPTTS 79
           PL TLSVL DNDAVVSA QAPLRQRRWEC  GPTTS
Sbjct: 102 PLSTLSVLSDNDAVVSAGQAPLRQRRWECRTGPTTS 137

[Close]

BLAST of MELO3C033350 vs. ExPASy TrEMBL
Match: A0A5A7TDY3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00310 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.1e-04
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 44  LLTLSVLCDNDAVVSARQAPLRQRRWECWAGPTTS 79
           L TLSVL +NDA VSA + PLRQRRWEC  GPTTS
Sbjct: 203 LSTLSVLRNNDAAVSAGRVPLRQRRWECRTGPTTS 237

The following BLAST results are available for this feature:

BLAST of MELO3C033350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033241.1	6.2e-07	71.43	hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa] >TYK2041...	[more]
KAA0037581.1	1.4e-06	86.11	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK03091.1	1.4e-06	86.11	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUV2	3.0e-07	71.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BTP3	6.7e-07	86.11	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5A7T7M6	6.7e-07	86.11	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5A7TDY3	9.1e-04	74.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C033350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033350.1	MELO3C033350.1	mRNA