MELO3C033348 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033348
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Shikimate kinase
Location	chr08: 20135011 .. 20137354 (+)
RNA-Seq Expression	MELO3C033348
Synteny	MELO3C033348

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTTCCGTCTGCTCGATCGCAAGCCCCCGTTCATCGTGAGCCGCCGCTGAAGACGTTACGTTCGTTCGCTGCTAAAGACGTTGTGTTCGTCCGCCGCTGAAGATTTGGTGTGTTCGTCCGCCGTCGTTCAGAACAGGTTCGTCCGCCACCGTTCACAGGTTCGTATCGTACATTTTTATGGCCTTTTAGTTTCAATTTTTGGGTACTTCAGAATCAAAAATGTGTTTGTTATATTTTAGGAGCCATTGAAATGTTTTAAAATCTCTTGTTCTTATAAGAACTCTTCAGGTTTGGTGTTTGCGATCTATTGCAATTATATTAAATTTTCTCTACTTGAAGGTAATGAAATGAGATGACCTGTTAATTCGATGGTATTTTATGAAATTATGTTTGTATTTAGTAAGAGTCATTTATAGCTTAGCTCCTAGAATTTTGATTATCATTTACTTGTGAAAATTTCTTTAATTCCATTTTATCTACGTCATTGGAACCCTAATGATTCATGAAGTTCCTCATCTTTACCCATTCTAAAATTAATGTTTCTTCAATTGTTTGAATTTGCTTAGTAGACTTAAACATCTTAGCACCACTTGTTAAATGTGTTTTAAAACGATAATTTCATTTCAATCTATTACCTTTTCTCCCAGTTGCTTCCACCGTGAAGAAACATCTAGTTGCTTTAAGATCTTTTTAGATGGAGGAGTCTATAATTCGTGGATTAAGGAATTTTTTGAAAATATAGATCAGGAGTTTGAGTCTGATGCTTGAGGCAAGGGCCACTATGCTATTGATTGGTTCCTGCCCAGAATGAGAGTTTCGTGAAATTTCCCTAATGATCAGCTTGAGTTTGATCCATTCTCCTCATTTCTTCCTACATAGATACGATATTTGCAAAACTAATAATTTATAAAGAAAAGAAAAAAGATAAAAAATAGAAAACAGGGTAATCGTCTTTTATGAACACAAGATGTTAGGCCGACTCATATGTGCTATCTTGTTGGGGATTTTGGGTGAGAGAACTACCTTAATCTTCAAAGGACATAAGAGTTTCTTTTGGCAGTTCTGTAGTCCCTTGCTAGATTCTCTATTTCGCTTTGGGCCTTTGTTTCTAAGCTCTTTTGTTACTATTAGCTTGGTCTTATTTCTCTTGATTGAAACTCCTTGTAGGTTGGTTTTTTTTTTTATGACATTTTTATTTTTTGTATGTTTGTGTACTCTTTCATTTTTTCCACGAAAGTTTAGTTTCTTTTCAGGGAATAAAACATTTTTGATAAGATTTTCAATTTTTGTGTTTCTCAGTATTGGAATCTGGAAACCATTGTGCTTCTGTTGATGAGTCTTTGGCTATACAGGCAAGGGTTTCTCAATCCCACTTTTTCATTATCATTTTATTAGGCTTTCCATCGCTTTCCTACCTTCTGTGATTGTGGAGCCTCTTACATTTCCTTTTCCCTGCTTTTTACTAAAAGGGGGACAAAGTTGTCCTATTAGTTGTTAAAGAAGAGGAGAGAGTCGCAACCACTATCTCTATTATGAGAATATATTCCAGAATCCAAGGATAAACCTTGGAGCCCACGTAGCGGTGAGGGACGAGATAGCTTTATCACCAAGGCCTTCTTCCATTTCTGGAGTTTCTTTCTTTATGAGCATGAGATGCACTTTTTTTTTTTGGACTTATATGCTTAAGACCACTGCTCTCTGGATCACCACGGATAAAAAAGAAGAAGAATTAGGCCTTCACCTCGAGCATCCTTGCTTTCCTTTTCCTCCTTCTTTGAATCGCAAGTGGGAAGGTAGGTGGAAGGGAGTCGGAAGTTTTCTTCTCAACCCCACGAGGTGCCCCAAACTCAGGCCTTTTGATCTCGATGAAATTGAGGACTAGCATATTTTTCATCTCTTTGCTCACCGGTCATAAAATTGCAGAGGAATTCCCGGGAGATTGAGTCATATTTAAATGAGCGCTCTATATATCTTGTTGGTGAGTTTCTTTCTTGGAGTTCTTCATTACTCTTGAGCTTATGCAGTTAGATATTTAAAATCTTATATATGAAATGCAGGAATGATGGCTTCGGAAAAACAATTGTGGGAAAAGTCTTGTCAAATGCACTTGGTTACTCCTTTTCTAATAGGTTTGTTTCATAGCGGTTAATGCATTTACTAAACTTTAGATAAAATTCTTGTACTCTTAGTTACATCTTGATTTCATAGCAAGAGAAATATTTACTTTCTTTAAGTTTTATAATTAAATTTAACTTCAAAGGTCCATTGAAAAGCAAAAGCTGAGTAAAACACAACTGACGTACATTATCATTGAAGTTGCAATAGGAGCAAAAAAATAA

mRNA sequence

ATGTCTCTTCCGTCTGCTCGATCGCAAGCCCCCACGTTGTGTTCGTCCGCCGCTGAAGATTTGGTGTGTTCGTCCGCCGTCGTTCAGAACAGGTTCGTCCGCCACCGTTCACAGGAGCCATTGAAATGTTTTAAAATCTCTTGTTCTTATAAGAACTCTTCAGTATTGGAATCTGGAAACCATTGTGCTTCTGTTGATGAGTCTTTGGCTATACAGGCAAGGAATCCAAGGATAAACCTTGGAGCCCACGTAGCGGTGAGGGACGAGATAGCTTTATCACCAAGGCCTTCTTCCATTTCTGGAACCACTGCTCTCTGGATCACCACGGATAAAAAAGAAGAAGAATTAGGCCTTCACCTCGAGCATCCTTGCTTTCCTTTTCCTCCTTCTTTGAATCGCAAGTGGGAAGGTAGGTGGAAGGGAGTCGGAAGTTTTCTTCTCAACCCCACGAGGAATGATGGCTTCGGAAAAACAATTGTGGGAAAAGTCTTGTCAAATGCACTTGGTTACTCCTTTTCTAATAGGTCCATTGAAAAGCAAAAGCTGAGTAAAACACAACTGACGTACATTATCATTGAAGTTGCAATAGGAGCAAAAAAATAA

Coding sequence (CDS)

ATGTCTCTTCCGTCTGCTCGATCGCAAGCCCCCACGTTGTGTTCGTCCGCCGCTGAAGATTTGGTGTGTTCGTCCGCCGTCGTTCAGAACAGGTTCGTCCGCCACCGTTCACAGGAGCCATTGAAATGTTTTAAAATCTCTTGTTCTTATAAGAACTCTTCAGTATTGGAATCTGGAAACCATTGTGCTTCTGTTGATGAGTCTTTGGCTATACAGGCAAGGAATCCAAGGATAAACCTTGGAGCCCACGTAGCGGTGAGGGACGAGATAGCTTTATCACCAAGGCCTTCTTCCATTTCTGGAACCACTGCTCTCTGGATCACCACGGATAAAAAAGAAGAAGAATTAGGCCTTCACCTCGAGCATCCTTGCTTTCCTTTTCCTCCTTCTTTGAATCGCAAGTGGGAAGGTAGGTGGAAGGGAGTCGGAAGTTTTCTTCTCAACCCCACGAGGAATGATGGCTTCGGAAAAACAATTGTGGGAAAAGTCTTGTCAAATGCACTTGGTTACTCCTTTTCTAATAGGTCCATTGAAAAGCAAAAGCTGAGTAAAACACAACTGACGTACATTATCATTGAAGTTGCAATAGGAGCAAAAAAATAA

Protein sequence

MSLPSARSQAPTLCSSAAEDLVCSSAVVQNRFVRHRSQEPLKCFKISCSYKNSSVLESGNHCASVDESLAIQARNPRINLGAHVAVRDEIALSPRPSSISGTTALWITTDKKEEELGLHLEHPCFPFPPSLNRKWEGRWKGVGSFLLNPTRNDGFGKTIVGKVLSNALGYSFSNRSIEKQKLSKTQLTYIIIEVAIGAKK

Homology

[Close]

BLAST of MELO3C033348 vs. NCBI nr
Match: XP_038902715.1 (shikimate kinase, chloroplastic-like [Benincasa hispida] >XP_038902716.1 shikimate kinase, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-09
Identity = 56/141 (39.72%), Postives = 60/141 (42.55%), Query Frame = 0


Query: 34  RHRSQEPLKCFKISCSYKNSSVLESGNHCASVDESLAIQARNPRINLGAHVAVRDEIALS 93
           RH SQ      KISCSYKNSSVLESGNHCASVDESLAIQ                     
Sbjct: 52  RHSSQRRTVALKISCSYKNSSVLESGNHCASVDESLAIQ--------------------- 111

Query: 94  PRPSSISGTTALWITTDKKEEELGLHLEHPCFPFPPSLNRKWEGRWKGVGSFLLNPTRND 153
                            +K  E+  +L   C                 VG          
Sbjct: 112 -----------------RKSREIESYLNGRCIYL--------------VGMM-------- 132

Query: 154 GFGKTIVGKVLSNALGYSFSN 175
           G GKT VGKVLSNALGYSFS+
Sbjct: 172 GSGKTTVGKVLSNALGYSFSD 132

[Close]

BLAST of MELO3C033348 vs. NCBI nr
Match: XP_008457898.1 (PREDICTED: shikimate kinase, chloroplastic-like [Cucumis melo] >XP_008457899.1 PREDICTED: shikimate kinase, chloroplastic-like [Cucumis melo] >KAA0045894.1 shikimate kinase [Cucumis melo var. makuwa] >TYK13694.1 shikimate kinase [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-08
Identity = 55/158 (34.81%), Postives = 66/158 (41.77%), Query Frame = 0


Query: 17  AAEDLVCSSAVVQNRFVRHRSQEPLKCFKISCSYKNSSVLESGNHCASVDESLAIQARNP 76
           A +D++ +      R  RH +       KISCSYKNSSVLESGNHCASVDESLAIQ +  
Sbjct: 35  AEQDILQAPFSFDLRVSRHSNHRRTVALKISCSYKNSSVLESGNHCASVDESLAIQRK-- 94

Query: 77  RINLGAHVAVRDEIALSPRPSSISGTTALWITTDKKEEELGLHLEHPCFPFPPSLNRKWE 136
                                                                  +R+ E
Sbjct: 95  -------------------------------------------------------SREIE 132

Query: 137 GRWKGVGSFLLNPTRNDGFGKTIVGKVLSNALGYSFSN 175
               G   +L+      G GKT VGKVLSNALGYSFS+
Sbjct: 155 SYLNGRSIYLVGMM---GSGKTTVGKVLSNALGYSFSD 132

[Close]

BLAST of MELO3C033348 vs. NCBI nr
Match: XP_011649381.1 (shikimate kinase, chloroplastic isoform X1 [Cucumis sativus] >XP_011649382.1 shikimate kinase, chloroplastic isoform X1 [Cucumis sativus] >KGN62088.1 hypothetical protein Csa_006505 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 4.2e-08
Identity = 55/158 (34.81%), Postives = 65/158 (41.14%), Query Frame = 0


Query: 17  AAEDLVCSSAVVQNRFVRHRSQEPLKCFKISCSYKNSSVLESGNHCASVDESLAIQARNP 76
           A +D++ +      R  RH +       KISCSY NSSVLESGNHCASVDE+LAIQ    
Sbjct: 39  AEQDVLQAPFSFDLRVSRHSNHRRTVALKISCSYNNSSVLESGNHCASVDETLAIQ---- 98

Query: 77  RINLGAHVAVRDEIALSPRPSSISGTTALWITTDKKEEELGLHLEHPCFPFPPSLNRKWE 136
                                             +K  E+  +L   C            
Sbjct: 99  ----------------------------------RKSREIESYLNGRCIYL--------- 136

Query: 137 GRWKGVGSFLLNPTRNDGFGKTIVGKVLSNALGYSFSN 175
                VG          G GKT VGKVLSNALGYSFS+
Sbjct: 159 -----VGMM--------GSGKTTVGKVLSNALGYSFSD 136

[Close]

BLAST of MELO3C033348 vs. NCBI nr
Match: NP_001292691.1 (shikimate kinase, chloroplastic [Cucumis sativus] >CBY85385.1 shikimate kinase [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 4.2e-08
Identity = 55/158 (34.81%), Postives = 65/158 (41.14%), Query Frame = 0


Query: 17  AAEDLVCSSAVVQNRFVRHRSQEPLKCFKISCSYKNSSVLESGNHCASVDESLAIQARNP 76
           A +D++ +      R  RH +       KISCSY NSSVLESGNHCASVDE+LAIQ    
Sbjct: 39  AEQDVLQAPFSFDLRVSRHSNHRRTVALKISCSYNNSSVLESGNHCASVDETLAIQ---- 98

Query: 77  RINLGAHVAVRDEIALSPRPSSISGTTALWITTDKKEEELGLHLEHPCFPFPPSLNRKWE 136
                                             +K  E+  +L   C            
Sbjct: 99  ----------------------------------RKSREIESYLNGRCIYL--------- 136

Query: 137 GRWKGVGSFLLNPTRNDGFGKTIVGKVLSNALGYSFSN 175
                VG          G GKT VGKVLSNALGYSFS+
Sbjct: 159 -----VGMM--------GSGKTTVGKVLSNALGYSFSD 136

[Close]

BLAST of MELO3C033348 vs. NCBI nr
Match: XP_022928030.1 (shikimate kinase, chloroplastic-like [Cucurbita moschata] >XP_022928031.1 shikimate kinase, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-06
Identity = 51/141 (36.17%), Postives = 57/141 (40.43%), Query Frame = 0


Query: 34  RHRSQEPLKCFKISCSYKNSSVLESGNHCASVDESLAIQARNPRINLGAHVAVRDEIALS 93
           R  S   +   KISCSY+NSSVLESGNH  SVDE+L IQ                     
Sbjct: 52  RRSSHHRIVALKISCSYQNSSVLESGNHRVSVDETLTIQ--------------------- 111

Query: 94  PRPSSISGTTALWITTDKKEEELGLHLEHPCFPFPPSLNRKWEGRWKGVGSFLLNPTRND 153
                            +K  E+  HL   C  F              VG          
Sbjct: 112 -----------------RKSREIESHLNGRCIYF--------------VGMM-------- 132

Query: 154 GFGKTIVGKVLSNALGYSFSN 175
           G GKT VGKVLSNALGYSFS+
Sbjct: 172 GSGKTTVGKVLSNALGYSFSD 132

[Close]

BLAST of MELO3C033348 vs. ExPASy TrEMBL
Match: A0A1S3C781 (Shikimate kinase OS=Cucumis melo OX=3656 GN=LOC103497472 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.4e-09
Identity = 55/158 (34.81%), Postives = 66/158 (41.77%), Query Frame = 0


Query: 17  AAEDLVCSSAVVQNRFVRHRSQEPLKCFKISCSYKNSSVLESGNHCASVDESLAIQARNP 76
           A +D++ +      R  RH +       KISCSYKNSSVLESGNHCASVDESLAIQ +  
Sbjct: 35  AEQDILQAPFSFDLRVSRHSNHRRTVALKISCSYKNSSVLESGNHCASVDESLAIQRK-- 94

Query: 77  RINLGAHVAVRDEIALSPRPSSISGTTALWITTDKKEEELGLHLEHPCFPFPPSLNRKWE 136
                                                                  +R+ E
Sbjct: 95  -------------------------------------------------------SREIE 132

Query: 137 GRWKGVGSFLLNPTRNDGFGKTIVGKVLSNALGYSFSN 175
               G   +L+      G GKT VGKVLSNALGYSFS+
Sbjct: 155 SYLNGRSIYLVGMM---GSGKTTVGKVLSNALGYSFSD 132

[Close]

BLAST of MELO3C033348 vs. ExPASy TrEMBL
Match: A0A5A7TS61 (Shikimate kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002170 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.4e-09
Identity = 55/158 (34.81%), Postives = 66/158 (41.77%), Query Frame = 0


Query: 17  AAEDLVCSSAVVQNRFVRHRSQEPLKCFKISCSYKNSSVLESGNHCASVDESLAIQARNP 76
           A +D++ +      R  RH +       KISCSYKNSSVLESGNHCASVDESLAIQ +  
Sbjct: 35  AEQDILQAPFSFDLRVSRHSNHRRTVALKISCSYKNSSVLESGNHCASVDESLAIQRK-- 94

Query: 77  RINLGAHVAVRDEIALSPRPSSISGTTALWITTDKKEEELGLHLEHPCFPFPPSLNRKWE 136
                                                                  +R+ E
Sbjct: 95  -------------------------------------------------------SREIE 132

Query: 137 GRWKGVGSFLLNPTRNDGFGKTIVGKVLSNALGYSFSN 175
               G   +L+      G GKT VGKVLSNALGYSFS+
Sbjct: 155 SYLNGRSIYLVGMM---GSGKTTVGKVLSNALGYSFSD 132

[Close]

BLAST of MELO3C033348 vs. ExPASy TrEMBL
Match: E7BBT4 (Shikimate kinase OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-08
Identity = 55/158 (34.81%), Postives = 65/158 (41.14%), Query Frame = 0


Query: 17  AAEDLVCSSAVVQNRFVRHRSQEPLKCFKISCSYKNSSVLESGNHCASVDESLAIQARNP 76
           A +D++ +      R  RH +       KISCSY NSSVLESGNHCASVDE+LAIQ    
Sbjct: 39  AEQDVLQAPFSFDLRVSRHSNHRRTVALKISCSYNNSSVLESGNHCASVDETLAIQ---- 98

Query: 77  RINLGAHVAVRDEIALSPRPSSISGTTALWITTDKKEEELGLHLEHPCFPFPPSLNRKWE 136
                                             +K  E+  +L   C            
Sbjct: 99  ----------------------------------RKSREIESYLNGRCIYL--------- 136

Query: 137 GRWKGVGSFLLNPTRNDGFGKTIVGKVLSNALGYSFSN 175
                VG          G GKT VGKVLSNALGYSFS+
Sbjct: 159 -----VGMM--------GSGKTTVGKVLSNALGYSFSD 136

[Close]

BLAST of MELO3C033348 vs. ExPASy TrEMBL
Match: A0A0A0LJX8 (Shikimate kinase OS=Cucumis sativus OX=3659 GN=Csa_2G296130 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-08
Identity = 55/158 (34.81%), Postives = 65/158 (41.14%), Query Frame = 0


Query: 17  AAEDLVCSSAVVQNRFVRHRSQEPLKCFKISCSYKNSSVLESGNHCASVDESLAIQARNP 76
           A +D++ +      R  RH +       KISCSY NSSVLESGNHCASVDE+LAIQ    
Sbjct: 39  AEQDVLQAPFSFDLRVSRHSNHRRTVALKISCSYNNSSVLESGNHCASVDETLAIQ---- 98

Query: 77  RINLGAHVAVRDEIALSPRPSSISGTTALWITTDKKEEELGLHLEHPCFPFPPSLNRKWE 136
                                             +K  E+  +L   C            
Sbjct: 99  ----------------------------------RKSREIESYLNGRCIYL--------- 136

Query: 137 GRWKGVGSFLLNPTRNDGFGKTIVGKVLSNALGYSFSN 175
                VG          G GKT VGKVLSNALGYSFS+
Sbjct: 159 -----VGMM--------GSGKTTVGKVLSNALGYSFSD 136

[Close]

BLAST of MELO3C033348 vs. ExPASy TrEMBL
Match: A0A6J1EQI5 (Shikimate kinase OS=Cucurbita moschata OX=3662 GN=LOC111434938 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.0e-07
Identity = 51/141 (36.17%), Postives = 57/141 (40.43%), Query Frame = 0


Query: 34  RHRSQEPLKCFKISCSYKNSSVLESGNHCASVDESLAIQARNPRINLGAHVAVRDEIALS 93
           R  S   +   KISCSY+NSSVLESGNH  SVDE+L IQ                     
Sbjct: 52  RRSSHHRIVALKISCSYQNSSVLESGNHRVSVDETLTIQ--------------------- 111

Query: 94  PRPSSISGTTALWITTDKKEEELGLHLEHPCFPFPPSLNRKWEGRWKGVGSFLLNPTRND 153
                            +K  E+  HL   C  F              VG          
Sbjct: 112 -----------------RKSREIESHLNGRCIYF--------------VGMM-------- 132

Query: 154 GFGKTIVGKVLSNALGYSFSN 175
           G GKT VGKVLSNALGYSFS+
Sbjct: 172 GSGKTTVGKVLSNALGYSFSD 132

The following BLAST results are available for this feature:

BLAST of MELO3C033348 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902715.1	1.3e-09	39.72	shikimate kinase, chloroplastic-like [Benincasa hispida] >XP_038902716.1 shikima...	[more]
XP_008457898.1	1.1e-08	34.81	PREDICTED: shikimate kinase, chloroplastic-like [Cucumis melo] >XP_008457899.1 P...	[more]
XP_011649381.1	4.2e-08	34.81	shikimate kinase, chloroplastic isoform X1 [Cucumis sativus] >XP_011649382.1 shi...	[more]
NP_001292691.1	4.2e-08	34.81	shikimate kinase, chloroplastic [Cucumis sativus] >CBY85385.1 shikimate kinase [...	[more]
XP_022928030.1	1.0e-06	36.17	shikimate kinase, chloroplastic-like [Cucurbita moschata] >XP_022928031.1 shikim...	[more]

BLAST of MELO3C033348 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033348 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C781	5.4e-09	34.81	Shikimate kinase OS=Cucumis melo OX=3656 GN=LOC103497472 PE=3 SV=1	[more]
A0A5A7TS61	5.4e-09	34.81	Shikimate kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002...	[more]
E7BBT4	2.0e-08	34.81	Shikimate kinase OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]
A0A0A0LJX8	2.0e-08	34.81	Shikimate kinase OS=Cucumis sativus OX=3659 GN=Csa_2G296130 PE=3 SV=1	[more]
A0A6J1EQI5	5.0e-07	36.17	Shikimate kinase OS=Cucurbita moschata OX=3662 GN=LOC111434938 PE=3 SV=1	[more]

BLAST of MELO3C033348 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033348.1	MELO3C033348.1	mRNA