MELO3C033326 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033326
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DNA excision repair protein ERCC-1
Location	chr08: 18446669 .. 18451417 (+)
RNA-Seq Expression	MELO3C033326
Synteny	MELO3C033326

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCATTGTAAGAAATCGACAAGCTCGTGGGTGATTGAAGGACGGGTCGAATTGCACCTTGTAATTCGTGCAAGTTCTAAGTCCCAAAAAAATGGTCAAGGTGATATGTTTTCTTATATGGGTCAAAATCATTTGCCAAATTTCACAAAAGCAATTAAATTCAATAAACGTCAACTTCTAATTAAGCTCAATAAGACCCTCATAAGATTGTTTTATCCATTTAAGGCTAAAGCTGTGGAAAAGACATGCACAAAATAGCTTAAAATATGCATTCACTGTAAGAAAAGGTATATACTATGACAGTTCGTTTCATTCAAAATTAAAAGGAGGGAAGAAAAAACTGTCATAATAGGTCAAAATGCGCGTTTTTGGCGAGAAAAGGCAGAATTTTTCGGATTTAAAGAATTTATGACAGTTTTTAACTGTCATAAATCTATGACAAATTTTAACTATCATTGAATATAAATAATAAAATAATTTATTAATTACATATTTTCTTATCTCCTTTCTAATTATAATAAAAAAAAGCCCGAACTTTTAATTTAACTTTTTTCCCTCAAATTTCTCCTTCTCCCCCAATCTTCCGTCTGTCGCGCGGTAACTGAAAAGCCCTAACTTATTCGACATCGTCTTTTCCATCTGAGTGGTGTTCATCGTCACTCGCAAGCCGCCGCCGTCTCTTCTGTCTGCGTTTCATTTCGTCGTTTTTCGTGGTTGCGCGTTCTGTTCGTGGTCGCTCGCAAGCCGCCGTCGCGCGTTCTGTTCCGTCTGCCGCAGGTTCGTCGTCGCTCGCAAGCAACCACCGCCTCTTCCGTCTGCGTAGGATCGTCCTCCGTCGCCGTTAAAAAGTCACCTCTTCCATCTGCGCAAGTTCGTCGTCGCTCGCAGTTTCATTTACTGTCTCTTGAATTTATTTTTTATTTTCTCCCTTTTTTATCTTATTTTTATCTGATTTTATCTTTCGAGTTTGTTGGATTTCAATGTCTAGGTGTGGATTGTTGTTGATTTTAGAAAAAATGATCAATTAGATACTTCATCTTCTTCAACATCAGCTTCCACAGCTACTCTGGTTAATAGCATGTCTGTTTCGAGTTCTGTTAGTTGCAATGCCATCTTGTCAGTAATAGACAGGTGAGATTGTTAATATAAGTCACTTGGTGTGTGTAACCATCTTAATTTGAATTAGTAGTTGACACATCGTGTTTTTCCATTTCGGAGTTTCGTTGTGAGGTTATAAATGATTTCACTGGCTGGCTATCTTGTAGCTTAGCTTTCCATGGAAGATGCGTCAATCATAATTTCTAGGAAGATTGAATAATAATGTACGAATCTTAGGTCATGACTTGTTAATATCAAATTTAGTAATGATACTTTTTTAAAGTGACCTTTCTATCAAACTAGTCATGGAAGTAGTAATGTGAGATTTGATTCTTTATGGTAAAAGTGTCCTACACCTCCTTTGTTATTTTGGTTTTCCTTTTTCTGTGACACTTGGTAGAATTCCTTATGATGTTTGATCCCTTCCTAGGTTCCATATTTCTTTATAGGCTTTGGTTATGAAGTTTTTTTATAATTGTCCACTTTGTTTTATCTTGTTTGGTACTTCAGCTTTTAGGAATTAAAAGTAGAGGATACTTACGTTTATATTTAAATTAAGAGCAAAGAGAAGTATTAAAATACCCCAATTCCTAAACATCAGCTCATGAGCTTGCTCTACGATTGTTCTTGTACTTCTTCTCATTTCTTTTTCTAGCCACACAAGTCGTAGTATGGCGAAGAAGCTAACCTACCAGAGATTTCATGAAGTCTTTATTGGAATATTGGCTCTCTGTTTATTCTGTGGAGAGTTTTGATGATGGGTAAAAATAGGATCTCGATAATTTATGGTAGGAATGTCTTTAAAGATGGGTTTAGACCATCCACATTTCAGTATCTTACTCTAAGCATTTACACTATTCCTTCAAGTTAATCTCTAATAACTAGGCTTCTTAACTACCATTAACTTTATTGTTATTTTTATTTTTCTTCTTTTCTTCTCACTATCTAATGGATTGAACAATCGTAGATGTGAAATATTTTCTTCCTGAGCTAACTGTTGCCCCATTAAGCCAACAAGATGTGAAATGTTTTGGGTTTTTATTTTATTGTTCTTATTATTTTGCCCTTAGTGTTCCCCAATGCCCAGGGGTGTATGGACTGTCTTTTTTATGTTACCTAACTCTTCCTATTTCATTGTTCTCAATGAAAGTGTTTTTTAATCTTAAAAAAAGGAGAGAAATAATGAATAGAATCTTTTTGGCGTAGTACTTCAAGTTTACTTTATTTGAAGTTTATGCCATAAAGTATATGCCATTGTTATACCGTTATAATGGTGAATTGATTCATCACATGTTTCTCTCGGAAGGAAAATCCTCTTCTCAAATACATCAGGAATGTGAGATGGGCTTTTGCAGATGTAGTACCTGATTATTTACTTGGGCAAAGCTCTTGTGCTCTCTATCTAAGGTTTGAATTTCATTCTCTCTGTATATATTCTACTCACGGTATCGAAAGAAATAAAATTGAGCTCTCTAGATTTAGAATGCCCGATGTTCGTATGAGGCTTGGTTTGTTTGAATTATGTGTAACACTGACAATCACAAACGGGTTTTGCAATTGCCAACCTTCCAACTTCTCAACTTGGATAGATGGACATTGTTCCATGTAGCAGTTTGCATGGTACCAGGCCAGGCCCTTGGTCCCTTTACCATCTAGGGCAGTGGACAGATGAACCTTGGAATTGTTTTACAATTAAATCAATATTTTTCTTCAATGAGTCCATAGACATGGATGACACAATAGAGAAAAAAAAAACAGAAAATAATACAAGCATATTCTGCAAATCCCAGTTTTGAGAAAATTATTTTATGTGATTGTATTAAACTTTAATTTTTCACATAGTAAATTTTTCTAGCTTTTGGTTTTATTTTTTCTCCTTTTTTAATTTGAATTTTTATCACATTAATTTTTGCATTTTCTGTCTAAAAATTGTGTGAGATGTAGTCAACAAATCATTTAACGGTGTATCATAAATAATTAATAAAAGTAGTATATGTACACGTACTATATATCGTAATTCTAGAAATTTTTACCGTGACACGTTGTTTAAATGTAATAAAAAATTTAAGGGATGATTTTATGTGTGGAAGGAATCAAGTATTTATTTATTATTTATTATTATTATTATTATTTTTTTGCTATTCAATATAGAGAATTGGCACATACAAAAATAATGTGGTAGGTGTCCTCAAACTCAGGACTCCAATTAGAAACAACTCTTTTTTCTTCACCAAACTCATAAATTGTTCTAATAAAACCACATATTGACTTTTTTGGGGGTTCTATTTTAAAAAATCTTGTTGAAGATATATGTCTTTCATTTGTTTTAGTTGTTTTAGGTAGACCAGCCCAACATATATTCTTTATATGCAACTCAACATATATTCCTTTTTTGCCCTTGTCGTTTTAAATGTTTAAATTTGATCATTGTTTAAATAGAATGAGTATTACTTTACCACGGTTATATTTTCTTTGAAAAGTCACTAAAAATTGTAATTGGATTTCATGAGTCTTCTCTTGCATTCCTTCTAAGATCATGTTGTTCAACTAGAAAGTCTTGTTTCTTGTTTATGTTACCTCTTTCTTGCTTTACTTTAACCCCTTACTTGTGTTTTTTGCTTGAGCTTTTCCAGCCCTGGAATGATTGTATATGATTGCTTGCTTCTGATGGCTATGTGTATCACTTTCTTCATTCAGGTTGATTATACCTCTGTGTTTTCTTTTTGCCTTTTATTGTTCATAGATAATGCACTTTCAGCTTGAATGGGATTGTAAGGCTTTCTCCTTTTATCTTTCTATATAATGCACTTGTGTAAGAGGCACTACTTAATTCTTCTGTTTATAGTATATTTTAGATTCTTGAGTTTTGTTAAGTATGTAGGCTGAATTTGGTGTTTGCGATTATGTATTCTTCAAGTGTGTATGTAATTTAGGTAAGTTTGTGGGCTGAATTTGGTGTTTGTGCTTATGTGTTGTCGAAGTGTGTATGTAATTTAGGTAAGTATGTGCTCTATGTTGTTGAAGTGTGTTGTTGATGTGTGTTGTTGATCATGAAGTGTTGTTGAAGTGTGTTGTTGATAAAAAAGTGTTGTTGAAGTGTGTTGTTGATAAAAAAGTGTTGTTGAAGTGTGTTGTTGATCATGAAGTGTTGTTGAAGTGTGTTGTTGATTGTGAAGTGTTGTTGTAGTGTGTTGTTGATTATGAAGTGTTGTTAAAGTGTTTTGTTGATCATGAAGTGTGTATGTAATTTATCTTAGTTTGTGGGATGAATTTAGCTAAGCTTAGAAGTTATTATTCTTGAAGTGTGTATGTGCTCTATGTTGTTGAAGTGTGTTGTTTATCATGAAGTGAATGTAATGTGTTTATGTGGGTGAATGTGTTGTCTTGTTAAATCATTTTTTTTCTTTTCTTATCTTATTAGGTTTTGACACAATCCATTGGAGCAATGAAGTCATATTTACGCCAATTCATTGATGTATAGGCTTTTTTGTAGGTTTGGTAGGAAATTTTTTTGTTTAAATGTAGTTATTTAAATAGTTTGTTCGTACCAAAACACATTTGTACCAACAATTAAAGCAATATTACGAAGTGTGTTGGACCTATAAAAGCGTTGACTGTTTTTTCATATGTGATTGTATTAGTCTGTAAT

mRNA sequence

ATGTGCATTGTAAGAAATCGACAAGCTCGTGGTGGTGTTCATCGTCACTCGCAAGCCGCCGCCGTCTCTTCTGTCTGCGTTTCATTTCGTCGTTTTTCGTGGTTGCGCGTTCTGTTCGTGGTCGCTCGCAAGCCGCCGTCGCGCGTTCTGTTCCGTCTGCCGCAGGTTCGTCGTCGCTCGCAAGCAACCACCGCCTCTTCCGTCTGCGTAGGATCGTCCTCCGTCGCCGTTAAAAAGTCACCTCTTCCATCTGCGCAAGTGTGGATTGTTGTTGATTTTAGAAAAAATGATCAATTAGATACTTCATCTTCTTCAACATCAGCTTCCACAGCTACTCTGGTTAATAGCATGTCTGTTTCGAGTTCTGTTAGTTGCAATGCCATCTTGTCAGTAATAGACAGCCACACAAGTCGTAGTATGGCGAAGAAGCTAACCTACCAGAGATTTCATGAAGAAAATCCTCTTCTCAAATACATCAGGAATGTGAGATGGGCTTTTGCAGATGTAGTACCTGATTATTTACTTGGGCAAAGCTCTTGTGCTCTCTATCTAAGGCTGAATTTGGTGTTTGCGATTATGTATTCTTCAAGTGTGTATGTAATTTAGGTAAGTTTGTGGGCTGAATTTGGTGTTTGTGCTTATGTGTTGTCGAAGTGTGTTTTGACACAATCCATTGGAGCAATGAAGTCATATTTACGCCAATTCATTGATGTATAGGCTTTTTTGTAGGTTTGGTAGGAAATTTTTTTGTTTAAATGTAGTTATTTAAATAGTTTGTTCGTACCAAAACACATTTGTACCAACAATTAAAGCAATATTACGAAGTGTGTTGGACCTATAAAAGCGTTGACTGTTTTTTCATATGTGATTGTATTAGTCTGTAAT

Coding sequence (CDS)

ATGTGCATTGTAAGAAATCGACAAGCTCGTGGTGGTGTTCATCGTCACTCGCAAGCCGCCGCCGTCTCTTCTGTCTGCGTTTCATTTCGTCGTTTTTCGTGGTTGCGCGTTCTGTTCGTGGTCGCTCGCAAGCCGCCGTCGCGCGTTCTGTTCCGTCTGCCGCAGGTTCGTCGTCGCTCGCAAGCAACCACCGCCTCTTCCGTCTGCGTAGGATCGTCCTCCGTCGCCGTTAAAAAGTCACCTCTTCCATCTGCGCAAGTGTGGATTGTTGTTGATTTTAGAAAAAATGATCAATTAGATACTTCATCTTCTTCAACATCAGCTTCCACAGCTACTCTGGTTAATAGCATGTCTGTTTCGAGTTCTGTTAGTTGCAATGCCATCTTGTCAGTAATAGACAGCCACACAAGTCGTAGTATGGCGAAGAAGCTAACCTACCAGAGATTTCATGAAGAAAATCCTCTTCTCAAATACATCAGGAATGTGAGATGGGCTTTTGCAGATGTAGTACCTGATTATTTACTTGGGCAAAGCTCTTGTGCTCTCTATCTAAGGCTGAATTTGGTGTTTGCGATTATGTATTCTTCAAGTGTGTATGTAATTTAG

Protein sequence

MCIVRNRQARGGVHRHSQAAAVSSVCVSFRRFSWLRVLFVVARKPPSRVLFRLPQVRRRSQATTASSVCVGSSSVAVKKSPLPSAQVWIVVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSVIDSHTSRSMAKKLTYQRFHEENPLLKYIRNVRWAFADVVPDYLLGQSSCALYLRLNLVFAIMYSSSVYVI

Homology

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BLAST of MELO3C033326 vs. NCBI nr
Match: KAA0035770.1 (uncharacterized protein E6C27_scaffold403G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-54
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 12  GVHRHSQAAAVSSVCVSFRRFSWLRVLFVVARKPPSRVLFRLPQVRRRSQATTASSVCVG 71
           GVHRHSQAAAVSSVCVSFRRFSWLRVLFVVARKPPSRVLFRLPQVRRRSQATTASSVCVG
Sbjct: 5   GVHRHSQAAAVSSVCVSFRRFSWLRVLFVVARKPPSRVLFRLPQVRRRSQATTASSVCVG 64

Query: 72  SSSVAVKKSPLPSAQVWIVVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSV 131
           SSSVAVKKSPLPSAQVWIVVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSV
Sbjct: 65  SSSVAVKKSPLPSAQVWIVVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSV 124

Query: 132 IDS 135
           IDS
Sbjct: 125 IDS 127

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BLAST of MELO3C033326 vs. NCBI nr
Match: TYK29848.1 (uncharacterized protein E5676_scaffold208G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 6.7e-30
Identity = 94/120 (78.33%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 23  SSVCVSFRRFSWLRVL---FVVARKPPSR----VLFRLP--QVRRRSQATTASSVCVGSS 82
           SS   S RR   LR +   FVVAR    R    V   +P  QVRRRSQATTASSVCVGSS
Sbjct: 6   SSSLASRRRLFCLRFISSFFVVARSVRGRSQAAVARSVPSAQVRRRSQATTASSVCVGSS 65

Query: 83  SVAVKKSPLPSAQVWIVVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSVID 134
           SVAVKKSPLPSAQVWIVVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSVID
Sbjct: 66  SVAVKKSPLPSAQVWIVVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSVID 125

[Close]

BLAST of MELO3C033326 vs. NCBI nr
Match: TYK02347.1 (DNA excision repair protein ERCC-1 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 4.1e-19
Identity = 69/112 (61.61%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 79  KSPLPSAQVWI----VVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSVIDS 138
           K P PS+   +    + + RKNDQLDTSSSSTSASTAT VNS+SVSSSVS NAIL     
Sbjct: 59  KPPSPSSSQSLPASNITNPRKNDQLDTSSSSTSASTATPVNSLSVSSSVSRNAIL----- 118

Query: 139 HTSRSMAKKLTYQRFHEENPLLKYIRNVRWAFADVVPDYLLGQSSCALYLRL 187
                           + NPLLK+IRNVRWAFADVVPDYLLGQSSCALYL L
Sbjct: 119 -----------VSNRQKGNPLLKHIRNVRWAFADVVPDYLLGQSSCALYLSL 154

[Close]

BLAST of MELO3C033326 vs. NCBI nr
Match: XP_008463078.1 (PREDICTED: DNA excision repair protein ERCC-1 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 4.1e-19
Identity = 69/112 (61.61%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 79  KSPLPSAQVWI----VVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSVIDS 138
           K P PS+   +    + + RKNDQLDTSSSSTSASTAT VNS+SVSSSVS NAIL     
Sbjct: 59  KPPSPSSSQSLPASNITNPRKNDQLDTSSSSTSASTATPVNSLSVSSSVSRNAIL----- 118

Query: 139 HTSRSMAKKLTYQRFHEENPLLKYIRNVRWAFADVVPDYLLGQSSCALYLRL 187
                           + NPLLK+IRNVRWAFADVVPDYLLGQSSCALYL L
Sbjct: 119 -----------VSNRQKGNPLLKHIRNVRWAFADVVPDYLLGQSSCALYLSL 154

[Close]

BLAST of MELO3C033326 vs. NCBI nr
Match: KAA0035007.1 (DNA excision repair protein ERCC-1 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 4.1e-19
Identity = 69/112 (61.61%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 79  KSPLPSAQVWI----VVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSVIDS 138
           K P PS+   +    + + RKNDQLDTSSSSTSASTAT VNS+SVSSSVS NAIL     
Sbjct: 59  KPPSPSSSQSLPASNITNPRKNDQLDTSSSSTSASTATPVNSLSVSSSVSRNAIL----- 118

Query: 139 HTSRSMAKKLTYQRFHEENPLLKYIRNVRWAFADVVPDYLLGQSSCALYLRL 187
                           + NPLLK+IRNVRWAFADVVPDYLLGQSSCALYL L
Sbjct: 119 -----------VSNRQKGNPLLKHIRNVRWAFADVVPDYLLGQSSCALYLSL 154

[Close]

BLAST of MELO3C033326 vs. ExPASy Swiss-Prot
Match: P07992 (DNA excision repair protein ERCC-1 OS=Homo sapiens OX=9606 GN=ERCC1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 153 NPLLKYIRNVRWAFADVVPDYLLGQSSCALYLRL 187
           NP+LK++RNV W F DV+PDY+LGQS+CAL+L L
Sbjct: 110 NPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSL 143

[Close]

BLAST of MELO3C033326 vs. ExPASy Swiss-Prot
Match: Q9MA98 (DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana OX=3702 GN=ERCC1 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-07
Identity = 50/154 (32.47%), Postives = 85/154 (55.19%), Query Frame = 0


Query: 41  VARKPPSRVLFRLP---QVRRRSQA-TTASSVCVGSSSVAVKKSPLPSAQVWIVVDFRKN 100
           +ARKP ++++  +P   +V   SQ  +T  S+   S S +   + + S+ V+       +
Sbjct: 18  IARKPKTQIVIGVPSYQEVLESSQTKSTPPSLFKPSQSFSQAFAFVKSSDVYSPPP--PS 77

Query: 101 DQLDTSSSSTSAS----TATLVNSMSVSSSVSCNAILSVIDSHTSRSMAKKLTYQRFHEE 160
               +SS  + AS    +++  +    +SS S       + S+T+++    L   R  + 
Sbjct: 78  SAAASSSQPSGASQVPHSSSQTHQTDGASSSSTPVATGSVPSNTTQNRNAILVSHR-QKG 137

Query: 161 NPLLKYIRNVRWAFADVVPDYLLGQSSCALYLRL 187
           NPLLK+IRNV+W F+D++PDY+LGQ+SCALYL L
Sbjct: 138 NPLLKHIRNVKWVFSDIIPDYVLGQNSCALYLSL 168

[Close]

BLAST of MELO3C033326 vs. ExPASy Swiss-Prot
Match: P07903 (DNA excision repair protein ERCC-1 OS=Mus musculus OX=10090 GN=Ercc1 PE=2 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-07
Identity = 22/34 (64.71%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 153 NPLLKYIRNVRWAFADVVPDYLLGQSSCALYLRL 187
           NP+LK++RNV W F +V+PDY+LGQS+CAL+L L
Sbjct: 110 NPVLKFVRNVPWEFGEVIPDYVLGQSTCALFLSL 143

[Close]

BLAST of MELO3C033326 vs. ExPASy Swiss-Prot
Match: Q1LZ75 (DNA excision repair protein ERCC-1 OS=Bos taurus OX=9913 GN=ERCC1 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.9e-07
Identity = 22/34 (64.71%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 153 NPLLKYIRNVRWAFADVVPDYLLGQSSCALYLRL 187
           NP+L+++RNV W F DV+PDY+LGQS+CAL+L L
Sbjct: 106 NPVLRFVRNVPWEFGDVLPDYVLGQSTCALFLSL 139

[Close]

BLAST of MELO3C033326 vs. ExPASy Swiss-Prot
Match: Q06182 (Mating-type switching protein swi10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=swi10 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.7e-04
Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 137 SRSMAKKLTYQRFHEENPLLKYIRNVRWAFADVVPDYLLGQSSCALYLRL 187
           SR  A  +      + NPLL ++RNV W + D+VPD+++G   C+L+L L
Sbjct: 36  SRVTAHSILVNPRQKGNPLLPHVRNVPWEYTDIVPDFVMGTGICSLFLSL 85

[Close]

BLAST of MELO3C033326 vs. ExPASy TrEMBL
Match: A0A5A7SXK6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00510 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 8.5e-55
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 12  GVHRHSQAAAVSSVCVSFRRFSWLRVLFVVARKPPSRVLFRLPQVRRRSQATTASSVCVG 71
           GVHRHSQAAAVSSVCVSFRRFSWLRVLFVVARKPPSRVLFRLPQVRRRSQATTASSVCVG
Sbjct: 5   GVHRHSQAAAVSSVCVSFRRFSWLRVLFVVARKPPSRVLFRLPQVRRRSQATTASSVCVG 64

Query: 72  SSSVAVKKSPLPSAQVWIVVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSV 131
           SSSVAVKKSPLPSAQVWIVVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSV
Sbjct: 65  SSSVAVKKSPLPSAQVWIVVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSV 124

Query: 132 IDS 135
           IDS
Sbjct: 125 IDS 127

[Close]

BLAST of MELO3C033326 vs. ExPASy TrEMBL
Match: A0A5D3E240 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00870 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.3e-30
Identity = 94/120 (78.33%), Postives = 96/120 (80.00%), Query Frame = 0


Query: 23  SSVCVSFRRFSWLRVL---FVVARKPPSR----VLFRLP--QVRRRSQATTASSVCVGSS 82
           SS   S RR   LR +   FVVAR    R    V   +P  QVRRRSQATTASSVCVGSS
Sbjct: 6   SSSLASRRRLFCLRFISSFFVVARSVRGRSQAAVARSVPSAQVRRRSQATTASSVCVGSS 65

Query: 83  SVAVKKSPLPSAQVWIVVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSVID 134
           SVAVKKSPLPSAQVWIVVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSVID
Sbjct: 66  SVAVKKSPLPSAQVWIVVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSVID 125

[Close]

BLAST of MELO3C033326 vs. ExPASy TrEMBL
Match: A0A5A7T0A2 (DNA excision repair protein ERCC-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G00490 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 69/112 (61.61%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 79  KSPLPSAQVWI----VVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSVIDS 138
           K P PS+   +    + + RKNDQLDTSSSSTSASTAT VNS+SVSSSVS NAIL     
Sbjct: 59  KPPSPSSSQSLPASNITNPRKNDQLDTSSSSTSASTATPVNSLSVSSSVSRNAIL----- 118

Query: 139 HTSRSMAKKLTYQRFHEENPLLKYIRNVRWAFADVVPDYLLGQSSCALYLRL 187
                           + NPLLK+IRNVRWAFADVVPDYLLGQSSCALYL L
Sbjct: 119 -----------VSNRQKGNPLLKHIRNVRWAFADVVPDYLLGQSSCALYLSL 154

[Close]

BLAST of MELO3C033326 vs. ExPASy TrEMBL
Match: A0A5D3BSF5 (DNA excision repair protein ERCC-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00400 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 69/112 (61.61%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 79  KSPLPSAQVWI----VVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSVIDS 138
           K P PS+   +    + + RKNDQLDTSSSSTSASTAT VNS+SVSSSVS NAIL     
Sbjct: 59  KPPSPSSSQSLPASNITNPRKNDQLDTSSSSTSASTATPVNSLSVSSSVSRNAIL----- 118

Query: 139 HTSRSMAKKLTYQRFHEENPLLKYIRNVRWAFADVVPDYLLGQSSCALYLRL 187
                           + NPLLK+IRNVRWAFADVVPDYLLGQSSCALYL L
Sbjct: 119 -----------VSNRQKGNPLLKHIRNVRWAFADVVPDYLLGQSSCALYLSL 154

[Close]

BLAST of MELO3C033326 vs. ExPASy TrEMBL
Match: A0A1S3CIE0 (DNA excision repair protein ERCC-1 OS=Cucumis melo OX=3656 GN=LOC103501314 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 69/112 (61.61%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 79  KSPLPSAQVWI----VVDFRKNDQLDTSSSSTSASTATLVNSMSVSSSVSCNAILSVIDS 138
           K P PS+   +    + + RKNDQLDTSSSSTSASTAT VNS+SVSSSVS NAIL     
Sbjct: 59  KPPSPSSSQSLPASNITNPRKNDQLDTSSSSTSASTATPVNSLSVSSSVSRNAIL----- 118

Query: 139 HTSRSMAKKLTYQRFHEENPLLKYIRNVRWAFADVVPDYLLGQSSCALYLRL 187
                           + NPLLK+IRNVRWAFADVVPDYLLGQSSCALYL L
Sbjct: 119 -----------VSNRQKGNPLLKHIRNVRWAFADVVPDYLLGQSSCALYLSL 154

[Close]

BLAST of MELO3C033326 vs. TAIR 10
Match: AT3G05210.1 (nucleotide repair protein, putative )

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-08
Identity = 50/154 (32.47%), Postives = 85/154 (55.19%), Query Frame = 0


Query: 41  VARKPPSRVLFRLP---QVRRRSQA-TTASSVCVGSSSVAVKKSPLPSAQVWIVVDFRKN 100
           +ARKP ++++  +P   +V   SQ  +T  S+   S S +   + + S+ V+       +
Sbjct: 18  IARKPKTQIVIGVPSYQEVLESSQTKSTPPSLFKPSQSFSQAFAFVKSSDVYSPPP--PS 77

Query: 101 DQLDTSSSSTSAS----TATLVNSMSVSSSVSCNAILSVIDSHTSRSMAKKLTYQRFHEE 160
               +SS  + AS    +++  +    +SS S       + S+T+++    L   R  + 
Sbjct: 78  SAAASSSQPSGASQVPHSSSQTHQTDGASSSSTPVATGSVPSNTTQNRNAILVSHR-QKG 137

Query: 161 NPLLKYIRNVRWAFADVVPDYLLGQSSCALYLRL 187
           NPLLK+IRNV+W F+D++PDY+LGQ+SCALYL L
Sbjct: 138 NPLLKHIRNVKWVFSDIIPDYVLGQNSCALYLSL 168

The following BLAST results are available for this feature:

BLAST of MELO3C033326 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035770.1	1.8e-54	100.00	uncharacterized protein E6C27_scaffold403G00510 [Cucumis melo var. makuwa]	[more]
TYK29848.1	6.7e-30	78.33	uncharacterized protein E5676_scaffold208G00870 [Cucumis melo var. makuwa]	[more]
TYK02347.1	4.1e-19	61.61	DNA excision repair protein ERCC-1 [Cucumis melo var. makuwa]	[more]
XP_008463078.1	4.1e-19	61.61	PREDICTED: DNA excision repair protein ERCC-1 [Cucumis melo]	[more]
KAA0035007.1	4.1e-19	61.61	DNA excision repair protein ERCC-1 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033326 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P07992	1.3e-07	67.65	DNA excision repair protein ERCC-1 OS=Homo sapiens OX=9606 GN=ERCC1 PE=1 SV=1	[more]
Q9MA98	3.7e-07	32.47	DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana OX=3702 GN=ERCC1 PE=2...	[more]
P07903	3.7e-07	64.71	DNA excision repair protein ERCC-1 OS=Mus musculus OX=10090 GN=Ercc1 PE=2 SV=2	[more]
Q1LZ75	4.9e-07	64.71	DNA excision repair protein ERCC-1 OS=Bos taurus OX=9913 GN=ERCC1 PE=2 SV=1	[more]
Q06182	1.7e-04	40.00	Mating-type switching protein swi10 OS=Schizosaccharomyces pombe (strain 972 / A...	[more]

BLAST of MELO3C033326 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SXK6	8.5e-55	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E240	3.3e-30	78.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T0A2	2.0e-19	61.61	DNA excision repair protein ERCC-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5D3BSF5	2.0e-19	61.61	DNA excision repair protein ERCC-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3CIE0	2.0e-19	61.61	DNA excision repair protein ERCC-1 OS=Cucumis melo OX=3656 GN=LOC103501314 PE=3 ...	[more]

BLAST of MELO3C033326 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05210.1	2.6e-08	32.47	nucleotide repair protein, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004579	ERCC1/RAD10/SWI10 family	PFAM	PF03834	Rad10	coord: 147..187 e-value: 9.0E-9 score: 35.3
IPR004579	ERCC1/RAD10/SWI10 family	PANTHER	PTHR12749	EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1	coord: 80..186
None	No IPR available	GENE3D	3.40.50.10130		coord: 143..190 e-value: 3.4E-10 score: 41.6
IPR011335	Restriction endonuclease type II-like	SUPERFAMILY	52980	Restriction endonuclease-like	coord: 146..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033326.1	MELO3C033326.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003684	damaged DNA binding