MELO3C033315 (gene) Melon (DHL92) v4

Overview
NameMELO3C033315
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase
Locationchr08: 17973990 .. 17975792 (-)
RNA-Seq ExpressionMELO3C033315
SyntenyMELO3C033315
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCAAATTCGGATATTCATTTGGTGCTTTTTGATGAAGAAAACAAGGCAGTTGGTTTTCACTCGAAATCAGGAGCTCTCTGGTTTTTCTTGTATTTCAGAGTGTATCGGTGGCGTTAGAATCTCTATTTGGTATGGATGGAAAGCTTATTCAATTTACTACAACTTTCATGAAGAAATTGTAAACCAAAAACGACTAAAATTCAGTTAAATTGTAGGGACAAGTTAAAGAGGTCGTGTGCGCGCGATTCTGGAAGTGGTTCTGTTTTGAGGGCTATATGTGTTTATGCACGGGGAATCAGATTTATATATCTTCAGGTAAGTTTTAGAGGATCTCAAAATAAAGATTTGGATATAAAGAACACTCATTTTGGTAAATTATTGAGAAAGTTATAGTCCTTTGAATTTATGTTAGAAATCTGGAAATTTTAGAGAATTGTTGAAATAGGATTTTATTTCTTAAGCTTTGTTTTCGTGAGCGTCATCCTTGGTGCGACATGTTATGTATATCTTTAGGAAACCAGAATGTTTAGAGTTTTAATACTCGATTGGGTTGTTGGCAGGCCGAGGAGAATTAAACCGAGCTTATAGACCAAGGATCTAGCCTAAGACTATGAGTGACAAAACCAACTATGAAATATTTTCCTTGAAAGGTATTTGAATTTCATGACTATTTTCAAGTATACATTTGGAGACTAGATTTCTTAAAGAAATTTATGCTAGCACGTAGATATTAAATGTTTGGAAAGTATTTAAACCACAATATTTTAAGCAAAGCATGAATTAGTATGAAGTTTTGTTTTATGAACTACAATTTTCCACGAAAGAGGTGAGTAAAGTTCGAGCTTTGTGTACAATTTATAAGCAGGCATGTTTTAATATTTAAAGATGATTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGTGCACACTGGTTAGATTCCGTTGTTGACGTTGAGTGTACTCCGTAACAATGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGGGGCCCGAGAACATCGTAGTGCTTGTAAACGTTGTTGTACTAGGTGTACCCTACACAACGTAGATTCGTCATGTTAGTTAAAATGCTTCGAATACTTGATATGCCTTGCTAGATTTCAATGATGAACATGCTGAGTATTTAAGGAAGCTATTCTTACTACTACACATTTACATTTACGACTTGTATAAACAGATTTATATGTGTAAAGTTTTCACGTGCTCTTATCTTTAAATTCATAGTTTTAAACTGAGTCACTCACTGAGCTTCATAGCTCACCCTTTCCAAAATGTTTTACCCATTTTCCAAGTAGAGATCGAGTTCCCGGTGCCTGATAGACTGCCTTAGTCTGTGGAAGCTTCATTATCGATTGCCAGTACGTGTTTTGAGTTGGGCATAGAGTCTGTTGTGTTGTGATGTATATACACCCTTGTATGTTATAGATACTCCAAAGTTTGTATAAGCTTTAGGAGCTGTAGTTGTGTAAATTTTGTTGGTTATATTTTGATTAAGGTGTCTTTAGGTTTACTCGTGAAATCGGTAAATTTTGAGGTATACTTCATGTATGTGTTTGACTAGCTGTGTTTGACTAGCCTATGATCCGCTGTGTTTTGTTGCATGTATAATAGTTTATATACTAGATTGGCAAGTTCATCACATGAAAGTTTTAAGAAGAGTCGACAGATACAGGTACAGAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTTGGTCTAAGTTAG

mRNA sequence

ATGGAGCAAATTCGGATATTCATTTGGTGCTTTTTGATGAAGAAAACAAGGCAGTTGGTTTTCACTCGAAATCAGGAGCTCTCTGTGTATCGGTGGCGTTAGAATCTCTATTTGGTATGGATGGAAAGCTTATTCAATTTACTACAACTTTCATGAAGAAATTTTAAATTGTAGGGACAAGTTAAAGAGGTCGTGTGCGCGCGATTCTGGAAGTGGTTCTGTTTTGAGGGCTATATGTGTTTATGCACGGGGAATCAGATTTATATATCTTCAGATGATTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGTGCACACTGGTTAGATTCCGTTGTTGACGTTGAGTGTACTCCGTAACAATGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGGGGCCCGAGAACATCGTAGTGCTTGTAAACGTTGTTGTACTAGGTGTACCCTACACAACGTAGATTCGTCATGTGTCTTTAGGTTTACTCGTGAAATCGATTGGCAAGTTCATCACATGAAAGTTTTAAGAAGAGTCGACAGATACAGGTACAGAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTTGGTCTAAGTTAG

Coding sequence (CDS)

ATGGAGCAAATTCGGATATTCATTTGGTGCTTTTTGATGAAGAAAACAAGGCAGTTGGTTTTCACTCGAAATCAGGAGCTCTCTGTGTATCGGTGGCGTTAG

Protein sequence

MEQIRIFIWCFLMKKTRQLVFTRNQELSVYRWR
Homology
[Close]
BLAST of MELO3C033315 vs. NCBI nr
Match: KAA0056684.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 1   MEQIRIFIWCFLMKKTRQLVFTRNQELS 29
           +EQIRIFIWCFLMKKT QLVFTRNQE+S
Sbjct: 92  LEQIRIFIWCFLMKKTGQLVFTRNQEVS 119

[Close]
BLAST of MELO3C033315 vs. ExPASy TrEMBL
Match: A0A5A7UNA3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73G00100 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.6e-05
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 1   MEQIRIFIWCFLMKKTRQLVFTRNQELS 29
           +EQIRIFIWCFLMKKT QLVFTRNQE+S
Sbjct: 92  LEQIRIFIWCFLMKKTGQLVFTRNQEVS 119

The following BLAST results are available for this feature:
BLAST of MELO3C033315 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056684.11.8e-0489.29DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C033315 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033315 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UNA38.6e-0589.29Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73... [more]
BLAST of MELO3C033315 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033315.1MELO3C033315.1mRNA