MELO3C033313 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033313
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	AP-3 complex subunit sigma-like
Location	chr08: 17886503 .. 17888707 (-)
RNA-Seq Expression	MELO3C033313
Synteny	MELO3C033313

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTTCATTCATTTAGGTAAGAAGAGATTGTATTCATCTTCACTTAATCCTTTGTCTTGTCTTGGAAATTGGTGGGATATTTTGAATCTTTTTTAGAACACTTCTGGTTTGATGTTAAATGTGACTAAAATCTTGCTTATTTGTTTCAATATGAGTAAGGAGGGAGTTGAAGAATGGGCAGAGGAGTTTCAATATAAAATAGGAGCATTTCTGATTAGTTACCTTGGTTTTTCTTTAGGTTGGAATCACCAAAGAAAAGCTTTTTGGAATATGTTAGTTGCTAAGCTCAAGGCTAAGTGGATGGTTTTGATAGATGGACATAATGATAGATCGCATAAAAGAGGCCTATAGTTATGATTGTAAAGATAATGATAGTGAAGTTTGGAATGTAGCTAGGCCTTAGAAGGGGCTCTTTTTGACCGAGTTAATTAGTTGGATGGCTTTGGTAGATAGAAACAATACAGTGCATTTGTGGGAAGGAGTGGAAAACATTTTATGGTCATTAGAGGGATCTGGAAGCATAGAGGCTATTTTCATTGTAACTTAATCATTTTTGTTGTTTGTTGAATGTTCGTTGTTCTGTTAGTGGTTACGTTGAGAAAGAGTAGCAACAATATTGATAGCAAATGATAGATATCTATCCATGTCTATACCAGATAGACATGGATAGGGATAAAAAATTTTCTTTATCTATCATTGTCTATTTTAATACAGCCTTTTCTGTCAAACAACTTAAAAAGTGCAATGCAGCAATTGATGCCTTTGGTGGGGCCAAAGCTTAAATAGAACCAGCAAATCCTTTGGAGTATTGTGGGGAAAGCAATACTCGCTGATTTATGGTTTGAAAGGAACCCAAGAGTTCCATGACAAGGAAACTAGTTTGCTTGAGCTGAAGCTACCTGGTTTAATGCTTTGGTCTTCTCTCTCCAAGGCTTTTGCAGATTATTCAAGGCAGGATATTAGCCTAAACTAGAGTGCTCTTATCTCCATGAATTAGAATTCTTTCTGCTGTTTTTGTTCCTTCTTGGCGACGGCGGCAACAACTACAAATGACTATATGAAGCTCTTCCTCTTGATTCACTTCATAGTCTCATAGTCTTGTTGTTTTTATGAGCTTTTGATGGCCATGAATTAGAATTCTTTCTGTTGTTTTTGTTCCTTCTTGGCGGCGGCGGCAGCAGCTACATATGCCTTGAGACTGGAGGTTTTTAACATTCCTTTCTGTTCAATATGTAATCCTATTTCATCAACATCGGTTAAGAAACATTTCTCATGCATTAATTGAACAAATATGAATGCTATCCTTAGGCTCACTTGTGGGTTAAAACTGTCAGTACACACGCATATATTGTTTTTCTTCTTCCAAAGATTTGGTTTACCTTTTCTAGTATGGATATGATTTTGGTTTCAGTAGAATATTTAATTGCTCCATGCCATTGCAAAGGCACTCAAAAGTATGCCATAGATCTTGTCTTGATAATTGGAGGTCCACAAAGGTCAGTTTTCACTCACTTCGTGTTTGCTTCTCTATTCTTTATTCACACTTTTTTCCTGGGTAATGGAATGTGGTATCAACTGCTATTCCAACGTAAAACTTTTACTTACTGTCATCAATCTGATACATCTGCTTTCAAGAATGATCAAGTTTTCAAGGTTTTGACTTCTAATCAATTTCAGTAATTCTGTCAATATAAGCCTTCATGACATGGCAATCTAAATTCTTACCTACAGTTAAACCCTTCACTCAAATTTAGACCTTGCACAATTTAGTATACATAGAGAAACTAAAATAAAGCAAGTTGATGAATATACCACTGATGCGCACAAGGTGTTTGATAAAATGTGTGAATAGAGAAAAAGGTGATTTAAAGGATTTTTTTCCTTTTTATCCTTTGATTATTATGAATTAAAACCTTCGGTTCTTAATTATCTGTTTTGTATTTTTAGTTCCTTTGATGTTTATGCTCTGTTGCTTTGGATGTTTCTTTAGCTTGTTTTTCTTTTGATGTTTATATTGGGCTTCAAGAAATTAGTACAAACTATGTTGTAGAATTGTTCATTTACTTGAGTTGGTGATTTTCTAATGCAGAATTACAAAAGAAATGCATATACAAAAGCAGACTTGCAATGCACGAATGCATATACAAAAGAAGTTGAGAGTTGCTTGCCTTCTGATGCAAATATCAATAATGTTGCGAAGGT

mRNA sequence

ATGACCTTCATTCATTTAGGTTGGAATCACCAAAGAAAAGCTTTTTGGAATATGTTAGTTGCTAAGCTCAAGGCTAAGTGGATGAATTACAAAAGAAATGCATATACAAAAGCAGACTTGCAATGCACGAATGCATATACAAAAGAAGTTGAGAGTTGCTTGCCTTCTGATGCAAATATCAATAATGTTGCGAAGGT

Coding sequence (CDS)

ATGACCTTCATTCATTTAGGTTGGAATCACCAAAGAAAAGCTTTTTGGAATATGTTAGTTGCTAAGCTCAAGGCTAAGTGGATGAATTACAAAAGAAATGCATATACAAAAGCAGACTTGCAATGCACGAATGCATATACAAAAGAAGTTGAGAGTTGCTTGCCTTCTGATGCAAATATCAATAATGTTGCGAAG

Protein sequence

MTFIHLGWNHQRKAFWNMLVAKLKAKWMNYKRNAYTKADLQCTNAYTKEVESCLPSDANINNVAK

Homology

[Close]

BLAST of MELO3C033313 vs. NCBI nr
Match: XP_008464326.1 (PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 2.5e-10
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 29  NYKRNAYTKADLQCTNAYTKEVESCLPSDANINNVAK 66
           NYKRNAYTKADLQC NAYTKEVESC PSDANINNVAK
Sbjct: 101 NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAK 137

[Close]

BLAST of MELO3C033313 vs. NCBI nr
Match: TYK03061.1 (putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 3.3e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 29  NYKRNAYTKADLQCTNAYTKEVESCLPSDANINNVAK 66
           +YK NAYTKADLQCTNAYTKEVESCLPSDANINNVAK
Sbjct: 95  SYKTNAYTKADLQCTNAYTKEVESCLPSDANINNVAK 131

[Close]

BLAST of MELO3C033313 vs. ExPASy TrEMBL
Match: A0A1S3CL75 (AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 29  NYKRNAYTKADLQCTNAYTKEVESCLPSDANINNVAK 66
           NYKRNAYTKADLQC NAYTKEVESC PSDANINNVAK
Sbjct: 101 NYKRNAYTKADLQCMNAYTKEVESCFPSDANINNVAK 137

[Close]

BLAST of MELO3C033313 vs. ExPASy TrEMBL
Match: A0A5D3BTL5 (Putative beta-1,3-galactosyltransferase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001620 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 29  NYKRNAYTKADLQCTNAYTKEVESCLPSDANINNVAK 66
           +YK NAYTKADLQCTNAYTKEVESCLPSDANINNVAK
Sbjct: 95  SYKTNAYTKADLQCTNAYTKEVESCLPSDANINNVAK 131

[Close]

BLAST of MELO3C033313 vs. TAIR 10
Match: AT5G46070.1 (Guanylate-binding family protein )

HSP 1 Score: 42.4 bits (98), Expect = 1.7e-04
Identity = 24/64 (37.50%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 6   LGWNHQRKAFWNMLVAKLKAKWMNYKRNAYTKADLQCTNAYTKEVE----SCLPSDANIN 65
           +G    RK F ++L   LK K+ +YK+NA+ +ADL+CT+   +  +    +C  S+AN++
Sbjct: 400 VGNGSARKKFEDLLHKDLKKKFEDYKKNAFMEADLRCTSTIQRMEKQLRAACHASNANMD 459

The following BLAST results are available for this feature:

BLAST of MELO3C033313 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464326.1	2.5e-10	94.59	PREDICTED: AP-3 complex subunit sigma-like [Cucumis melo]	[more]
TYK03061.1	3.3e-10	94.59	putative beta-1,3-galactosyltransferase 2 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033313 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033313 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CL75	1.2e-10	94.59	AP-3 complex subunit sigma-like OS=Cucumis melo OX=3656 GN=LOC103502239 PE=3 SV=...	[more]
A0A5D3BTL5	1.6e-10	94.59	Putative beta-1,3-galactosyltransferase 2 OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of MELO3C033313 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46070.1	1.7e-04	37.50	Guanylate-binding family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033313.1	MELO3C033313.1	mRNA