MELO3C033307 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033307
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	RNA-directed DNA polymerase-like protein
Location	chr08: 17472662 .. 17476558 (+)
RNA-Seq Expression	MELO3C033307
Synteny	MELO3C033307

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGGTCTCTAGTTTTTCTTATATTTCAGAGTGTACCTGTGGAGTTAGGATCTCTATTTGGTATGGTTAGAAAGCTTATTCAATTTACTACAACTTGCATGAAGAAATCGTGAACCACAAATGACCAAAAAACAGTTAAATTGTAGGGACAAGTTAAAGAGGTCGTGTGCACGCGATATTGGAAGTTGTTCTATTTCGAGGGTTATCTGAGTTTATTCCTAGGGAATCAGATTTACATGTCTTCAGGTGATTTTTTGAGGATCTCAAAATAAAGATTTTGAAATAAAAAATACTCATTTTGGTTAAGTATTGAGAAATTTATAGTCATTTGAAGTTTATGTTAGAAATCTGGAAATTTCAGAGAGTTGTTGAAATAGGATTTTATTTTTTAAGCTTTGTTTTCGTGAACGTCATCTTTGGTGCGACATGTTATGTATATCTTTAGGAAACCAGAATGTTTAGAGTTCTAATACTCGGTTGGGTTGTTGGTAGGCCGAGAAGAACTAAATCGAGCTTATAGACCAAGGATCTAGCCCAAGACGGTGAGTGACAAAACCAACTTTGAAATATTTTCCATATCTGTTATTATGATTGAATGCGATAAATGTTTATTTACGAAGCCATGAAAGGTATTTGAATTTCATGACTATTTTCAAGTATACATTTGAAGACTAGATTTCTTAAAGAAATTTATGCTAGCACGTAGATATTAAATGTTTGCAAAGTATTTAAACCACAATGTTTTAAGCAAAGCATGAATTAGTAAGAAGTTTTATTTTAAGAACTACAGTTTTCATGAAAGAGCTGAGTAAAGTTCGAGCTTTGTGTAAAATTTATTAGCAGGCATTTTTTTAATATATTTAGATGATTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGCGCACACTGGTTAGATTTCGTTTTTGATGTTGAGTTTACTCCATAACAACGATGCTGTCGTGAGTGCTGGACGGGCCCCACTATATCGTAGAGCTTGTAAACGTTGTTGTACTGGGTGTACCCTACACAACGTAGATTTGTCATGTTAGTTAAAATGCTTTGATATACTTGATATGTCTTGCTAGATTTCAATGACGAACATGTTGAGTATTTGAGGAAGCTATTCTTACTACTACATGTTTACATTTACGACTTGTATAAACAGATTTATAAGTGTAAAGTTTTCACATGCTCTCATCTTTAAATTCATAGTTTTAAACTGAGTCACTCACTGAGCTTCATAGCTCACCCTTTCCAAAATGAACCCATTTTCCAGGTAGAGATCGAGTTCCCGGTGCCTGATAGACTGCCTTAGTCTACTTAAGCTCCGTTATCGATTGCCAGTACATGTTTTGAGTTGGGCATAGAGTGTATTCTGTTATGATGTATATACACCCTTGTATGTTATAGATACTCCACAGTTTGTATAAGCTTTAGAAGCTGTAGTTGTGTAAATTTTTGTTGGTTATATTTTGATTAAGGTGTCCTTAGGTTTACTCGTGAAATCAGTAAATTTTAAGGTACACTTCATGTATGTGTTTGACTAGCCTAGGATCCGCTGTGTTTTGTTGCATGTATAATAGTTTATATACTAGATTGGCAAGTTCATCACATGAAAGTTTTAAGCAGAGTCGACAGATACAGGTATATAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGATAGTCTTATTCTGGAAAAACACTATGGATGCGGTCCGCTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGGGATATGGAAGTGGGGGCGTCCTATGTAAATGGATTGCATAAGACTTTTAGTTATAACGACGTAAACTATAAACTGACTATTTCATTTATAATGACCTAGGTAACTTGATCTTAATCCTGAGCTAACTATGAACTTTTGTTCATTCGTATCCTTAGATCTGCATAGGTGAGGACAGCTAATCATCGCTGGCCATATAAGCCTCCCATTTCAGGGATAAGACTGAGTGGATAGCTAGGGACATAGGGTGCAAGACGGAATTCACTCCTACCCACTTTTGGGATAGTAGATAGGTTGCTCCCACTTTTGGGCCCCACCTTCTCATTAGCCCGAGAAGGATTCAGGTTTATAGGTTTGACCTTAAACCAATTGTTCAATAATGGATCAGTGGGTCTTAAGGAGCAAGATATAAATCTCGGGGGTAAAATTGTATTTTGATCCAACCAATATTACAAACAACCTGTGTAGGATCAACTTACTCGTCATGGTTATATCATGTGGACATAAATATATCTATAGTGAGGGGAATGCCATAAAGAGTCTTTAGTGGAATGACTCTTTAGTTAACGAATGTTGATTAAACTTGGTCTAAAAGAGTTTAGCCAGTTAATCTCGAATCGTTAGAGCCCATGATCTATAGGTCCATTAGGTTCCCCTACTAGCTCATATGGATTCAACTAAGAATAATATGTTGGAATAATTCGAATTGTTCGAATTACGTAAGGAGAGAAAAACCGACCAGTGTATATGATATAAATCGGTAAATATAAACTTTAAGCTTTATGTTTAAATATGATTTAAATAATGAATATGGATTCATATTTACAAGCTTGGAAAGTTTTGAAACGGTCAAATCTGTAAAAGTCAACATGTTGACTTTTCACTTTGAAAAACAAAAATTTGTCCGGATTTATATTCAAATATGATTTGACTTTTACAAAAATGAATGGGGATTCATACTCGGGAGGTTGAAATTAGTCAAGACGGATAAATAGCAAAAAGTCAAAACGTTGACTTTTGACTAAGAAAAGTCAAAGTTTGACTTTTACTTAATTGGTCAAATGACCAAATTGCCCTTTGACTAATATACTTATTAAATGTTTGTGGCAAATGTGGCAACTTATTATGTACTTATAAGCCATCAATTCCATTAAGGGCTAATGGATTAATTAGGTGTTGAGATTTCATAAAAGAAAATTGCATGTATTTTGCATGTAATTTTCTATTTAAGCTTCCATTTACAGAATGAGAAGATGATGATGAAAATCTCATCAGTAAACCTATAAACGATACACATTCCTCATTCCATCTCTCTAAGATATCCTTCATAAAACGAGTTCCACAACTCGGTTCTTAGTCCTGAGATTAGTAGGTCAACATAGTGGTTGTCCTTTGCTCGTGATCTTCAGGTAGAGAAGAAGTTTTGGAACGAAGAAGAAGTTGAGAACTACAAAGGTAAGTTCATCGTTTACCTTCTATATTCTTCGTTTAGGTCTATCGTTCAGGTACAACATGTTAATGTCTAAATCATTTAGATGCATATATAGTAAAGCATGATTCTTGTCTTTCGCTGCATGTTTCTCTGTGGTTTTTTTTTTCCATCATGTGGTATAAGAGCATGATGATTTTTACTCATATGTAAATGGTGGGTTCTTACAATTTAAATGATAAATTGTTATGGTTGAACTAAAATGGATTAGTTATGGATTTGGCTCTAAATTAAGTTGTTTATTTGCATTAATTATTGTAATTAGCCCTGTTGGTGGCTTAATTTACTTTTTGCAAAGTATCCGTAATTTGTTGGAGTCATTAGAGTTGTTTTTAGGTTGTAATTGCTTCATTCGGGAAGAAGAAGTGCTATTTTGAAGCTCAGACCCGAGAAGAAGTTGTTTCAGACCTATCGTTCACCCTCTCAACGATCGTGTATGGTACGAGCATCGCTTGTGCCTGTGAACGTCGCTCTTACCAGCTAAACAATCGCGTATGGTACGTGTATTGTTTGTATAAGATCACAGCGTTTGCCAGCTAA

mRNA sequence

ATGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGAGTGTACCTGTGGAGTTAGGATCTCTATTTGGTATGATGATTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGCGCACACTGGTGTCCTTAGGTTTACTCGTGAAATCAGTAAATTTTAAGGTATATAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGATAGTCTTATTCTGGAAAAACACTATGGATGCGGTCCGCTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGGGATATGGAAGTGGGGGCGTCCTATAATGAGAAGATGATGATGAAAATCTCATCAGTAGAGAAGAAGTTTTGGAACGAAGAAGAAGTTGAGAACTACAAAGGTAAGTTCATCGTTTACCTTCTATATTCTTCGTTTAGGTCTATCGTTCAGGTTGTAATTGCTTCATTCGGGAAGAAGAAGTGCTATTTTGAAGCTCAGACCCGAGAAGAAGTTGTTTCAGACCTATCGTTCACCCTCTCAACGATCGTGTATGGTACGAGCATCGCTTGTGCCTGTGAACGTCGCTCTTACCAGCTAAACAATCGCGTATGGTACGTGTATTGTTTGTATAAGATCACAGCGTTTGCCAGCTAA

Coding sequence (CDS)

ATGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGAGTGTACCTGTGGAGTTAGGATCTCTATTTGGTATGATGATTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGCGCACACTGGTGTCCTTAGGTTTACTCGTGAAATCAGTAAATTTTAAGGTATATAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGATAGTCTTATTCTGGAAAAACACTATGGATGCGGTCCGCTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGGGATATGGAAGTGGGGGCGTCCTATAATGAGAAGATGATGATGAAAATCTCATCAGTAGAGAAGAAGTTTTGGAACGAAGAAGAAGTTGAGAACTACAAAGGTAAGTTCATCGTTTACCTTCTATATTCTTCGTTTAGGTCTATCGTTCAGGTTGTAATTGCTTCATTCGGGAAGAAGAAGTGCTATTTTGAAGCTCAGACCCGAGAAGAAGTTGTTTCAGACCTATCGTTCACCCTCTCAACGATCGTGTATGGTACGAGCATCGCTTGTGCCTGTGAACGTCGCTCTTACCAGCTAAACAATCGCGTATGGTACGTGTATTGTTTGTATAAGATCACAGCGTTTGCCAGCTAA

Protein sequence

MKKTGQLVFTRNQESVPVELGSLFGMMIYEIFINYMTEILSLRLEITVRTLVSLGLLVKSVNFKVYKSVVRRLHAIFRSKVAGSPGGGVIVLFWKNTMDAVRSVVSTNDVILNRSCRDMEVGASYNEKMMMKISSVEKKFWNEEEVENYKGKFIVYLLYSSFRSIVQVVIASFGKKKCYFEAQTREEVVSDLSFTLSTIVYGTSIACACERRSYQLNNRVWYVYCLYKITAFAS

Homology

[Close]

BLAST of MELO3C033307 vs. NCBI nr
Match: KAA0056695.1 (hypothetical protein E6C27_scaffold73G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-10
Identity = 53/92 (57.61%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 36 MTEILSLRLEITVRTL----------------------------------VSLGLLVKSV 94
          MTEILSLRLEITV TL                                  VSLGLLVKSV
Sbjct: 1  MTEILSLRLEITVCTLVLIDFPVPDRRPYSAEASLSIASTCFELGIESVVVSLGLLVKSV 60

[Close]

BLAST of MELO3C033307 vs. NCBI nr
Match: TYK01066.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 3.1e-10
Identity = 39/55 (70.91%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 167 QVVIASFGKKKCYFEAQTREEVVSDLSFTLSTIVYGTSIACACERRSYQLNNRVW 222
           + V  SF KKKC FEAQTRE  VS LSFTLS I YG  IACA ERRSYQLN+ VW
Sbjct: 200 KTVNTSFKKKKCCFEAQTREGAVSGLSFTLSMIAYGMCIACASERRSYQLNDCVW 254

[Close]

BLAST of MELO3C033307 vs. NCBI nr
Match: KAA0042134.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-09
Identity = 58/122 (47.54%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 1   MKKTGQLVFTRNQE------------------------SVPVELGSLFGMMIYEIFINYM 60
           MKKTGQLVFTRNQE                        S   + GS  G ++  I + Y 
Sbjct: 1   MKKTGQLVFTRNQEVSGSSCISECIGGVRISIWDKLKRSCAHDSGS--GSVLRVICV-YA 60

Query: 61  TEILSLRLEITVRTL---------VSLGLLVKSVNFKVYKSVVRRLHAIFRSKVAGSPGG 90
             I  + L+I + TL         VSLG LVKSVN +V KSVVR+LHAIFRSKVAGSPGG
Sbjct: 61  RGIRFICLQIPLLTLSVLRNNDAVVSLGFLVKSVNLEVQKSVVRQLHAIFRSKVAGSPGG 119

[Close]

BLAST of MELO3C033307 vs. NCBI nr
Match: KAA0042349.1 (uncharacterized protein E6C27_scaffold795G00510 [Cucumis melo var. makuwa] >TYK15472.1 uncharacterized protein E5676_scaffold477G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-07
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 48  VRTLVSLGLLVKSVNF-----KVYKSVVRRLHAIFRSKVAGSPGGGV 90
           +R+ VSLGLLVKSVNF     +V KSVVRRLHAIFRSKVAGSPGGGV
Sbjct: 251 IRSTVSLGLLVKSVNFESRQIQVQKSVVRRLHAIFRSKVAGSPGGGV 297

[Close]

BLAST of MELO3C033307 vs. NCBI nr
Match: TYK31055.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 3.3e-04
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 52  VSLGLLVKSVNF-----KVYKSVVRRLHAIFRSKVAGSPGGGV----IVLFWKNTMDAVR 111
           VSLGLLVKSVNF     +V KSVV  LHAIFRSKVAGSP GGV    +V+   +  D++ 
Sbjct: 92  VSLGLLVKSVNFESRQIQVQKSVVHWLHAIFRSKVAGSPEGGVTKTQVVIPDDSVEDSLS 151

Query: 112 SVVSTNDVILNRSCRDMEV 122
              + NDV  ++  + M++
Sbjct: 152 YKQAMNDVDKDQWVKTMDL 170

[Close]

BLAST of MELO3C033307 vs. ExPASy TrEMBL
Match: A0A5A7UT45 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73G00230 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.7e-11
Identity = 53/92 (57.61%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 36 MTEILSLRLEITVRTL----------------------------------VSLGLLVKSV 94
          MTEILSLRLEITV TL                                  VSLGLLVKSV
Sbjct: 1  MTEILSLRLEITVCTLVLIDFPVPDRRPYSAEASLSIASTCFELGIESVVVSLGLLVKSV 60

[Close]

BLAST of MELO3C033307 vs. ExPASy TrEMBL
Match: A0A5D3BS37 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00800 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-10
Identity = 39/55 (70.91%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 167 QVVIASFGKKKCYFEAQTREEVVSDLSFTLSTIVYGTSIACACERRSYQLNNRVW 222
           + V  SF KKKC FEAQTRE  VS LSFTLS I YG  IACA ERRSYQLN+ VW
Sbjct: 200 KTVNTSFKKKKCCFEAQTREGAVSGLSFTLSMIAYGMCIACASERRSYQLNDCVW 254

[Close]

BLAST of MELO3C033307 vs. ExPASy TrEMBL
Match: A0A5A7TFC5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006220 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-09
Identity = 58/122 (47.54%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 1   MKKTGQLVFTRNQE------------------------SVPVELGSLFGMMIYEIFINYM 60
           MKKTGQLVFTRNQE                        S   + GS  G ++  I + Y 
Sbjct: 1   MKKTGQLVFTRNQEVSGSSCISECIGGVRISIWDKLKRSCAHDSGS--GSVLRVICV-YA 60

Query: 61  TEILSLRLEITVRTL---------VSLGLLVKSVNFKVYKSVVRRLHAIFRSKVAGSPGG 90
             I  + L+I + TL         VSLG LVKSVN +V KSVVR+LHAIFRSKVAGSPGG
Sbjct: 61  RGIRFICLQIPLLTLSVLRNNDAVVSLGFLVKSVNLEVQKSVVRQLHAIFRSKVAGSPGG 119

[Close]

BLAST of MELO3C033307 vs. ExPASy TrEMBL
Match: A0A5A7TLX3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00470 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 48  VRTLVSLGLLVKSVNF-----KVYKSVVRRLHAIFRSKVAGSPGGGV 90
           +R+ VSLGLLVKSVNF     +V KSVVRRLHAIFRSKVAGSPGGGV
Sbjct: 251 IRSTVSLGLLVKSVNFESRQIQVQKSVVRRLHAIFRSKVAGSPGGGV 297

[Close]

BLAST of MELO3C033307 vs. ExPASy TrEMBL
Match: A0A5D3E6W6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003130 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-04
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 52  VSLGLLVKSVNF-----KVYKSVVRRLHAIFRSKVAGSPGGGV----IVLFWKNTMDAVR 111
           VSLGLLVKSVNF     +V KSVV  LHAIFRSKVAGSP GGV    +V+   +  D++ 
Sbjct: 92  VSLGLLVKSVNFESRQIQVQKSVVHWLHAIFRSKVAGSPEGGVTKTQVVIPDDSVEDSLS 151

Query: 112 SVVSTNDVILNRSCRDMEV 122
              + NDV  ++  + M++
Sbjct: 152 YKQAMNDVDKDQWVKTMDL 170

The following BLAST results are available for this feature:

BLAST of MELO3C033307 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056695.1	1.4e-10	57.61	hypothetical protein E6C27_scaffold73G00230 [Cucumis melo var. makuwa]	[more]
TYK01066.1	3.1e-10	70.91	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]	[more]
KAA0042134.1	4.5e-09	47.54	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0042349.1	3.2e-07	78.72	uncharacterized protein E6C27_scaffold795G00510 [Cucumis melo var. makuwa] >TYK1...	[more]
TYK31055.1	3.3e-04	49.37	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033307 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033307 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UT45	6.7e-11	57.61	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BS37	1.5e-10	70.91	RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TFC5	2.2e-09	47.54	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5A7TLX3	1.5e-07	78.72	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3E6W6	1.6e-04	49.37	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0031...	[more]

BLAST of MELO3C033307 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033307.1	MELO3C033307.1	mRNA