MELO3C033297.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C033297.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Transcription factor GTE10
Location	chr08: 16577512 .. 16578234 (-)
RNA-Seq Expression	MELO3C033297.jh1
Synteny	MELO3C033297.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTTCTCGGCGTCGGGACAAACGTCGGGGAAAGTGAGTTGGGATAGGCTTTCCCGACGCTGTGTTGGTCACGCGTCGGGAAAGCCTCTCCCGACACCGTCTTTCCTGACGCAATCCACGACGTCAGGAAAGCCTCCCCCGACAGGCTTTACCGTGCAGATTTGTTAAGGAATCGTTTTGCCGACACTATACTGAAAGCTCGAGAAAGGCACTTGAAAAGGTTCGTTAAACTTGAGATTTTTCTTGTTTGTCCAATGTTAGGTCAACCCTATGATGCACAGAGGCACACATATTCATTCAATGAAAGTTGTTTCAATAAAAAAAAATATTCATTTAAGATATATTTGTTTAGAAAGTTATTGACTGACTTAGCTACAGGGTGACAAACGGGATCCTGAAAAAGTGAGAACGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAAGATTGGAGTCTTTACATTGATGACGACACAATCATAGTAGAGAAAGTAGAGCGATCAAAACTATTTCAGGAAGTTACTAATTCCTTTTTCAATACAGAAAAAGCACTGTTGCAAGCAGAGGCAAAAGCCGCAGAGGATGCTCGGAGGGAGGTTGAAGCTGAAGTTGCGACCGCGGCGAGGGACAACGATGAGGGACGACAACGACGATGGAACGAACGGCGACGAATGTTTCTCTCTTCGCCGAACCTTTTCCCTTTCGTTTTCAGTTCTGTGTAA

mRNA sequence

ATGCAGTTCTCGGCGTCGGGACAAACGTCGGGGAAAGTGAGTTGGGATAGGCTTTCCCGACGCTGTGTTGGTCACGCGTCGGGAAAGCCTCTCCCGACACCGTCTTTCCTGACGCAATCCACGACGTCAGGAAAGCCTCCCCCGACAGGCTTTACCGGTGACAAACGGGATCCTGAAAAAGTGAGAACGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAAGATTGGAGTCTTTACATTGATGACGACACAATCATAGTAGAGAAAGTAGAGCGATCAAAACTATTTCAGGAAGTTACTAATTCCTTTTTCAATACAGAAAAAGCACTGTTGCAAGCAGAGGCAAAAGCCGCAGAGGATGCTCGGAGGGAGGTTGAAGCTGAAGTTGCGACCGCGGCGAGGGACAACGATGAGGGACGACAACGACGATGGAACGAACGGCGACGAATGTTTCTCTCTTCGCCGAACCTTTTCCCTTTCGTTTTCAGTTCTGTGTAA

Coding sequence (CDS)

ATGCAGTTCTCGGCGTCGGGACAAACGTCGGGGAAAGTGAGTTGGGATAGGCTTTCCCGACGCTGTGTTGGTCACGCGTCGGGAAAGCCTCTCCCGACACCGTCTTTCCTGACGCAATCCACGACGTCAGGAAAGCCTCCCCCGACAGGCTTTACCGGTGACAAACGGGATCCTGAAAAAGTGAGAACGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAAGATTGGAGTCTTTACATTGATGACGACACAATCATAGTAGAGAAAGTAGAGCGATCAAAACTATTTCAGGAAGTTACTAATTCCTTTTTCAATACAGAAAAAGCACTGTTGCAAGCAGAGGCAAAAGCCGCAGAGGATGCTCGGAGGGAGGTTGAAGCTGAAGTTGCGACCGCGGCGAGGGACAACGATGAGGGACGACAACGACGATGGAACGAACGGCGACGAATGTTTCTCTCTTCGCCGAACCTTTTCCCTTTCGTTTTCAGTTCTGTGTAA

Protein sequence

MQFSASGQTSGKVSWDRLSRRCVGHASGKPLPTPSFLTQSTTSGKPPPTGFTGDKRDPEKVRTEREELERQQREDWSLYIDDDTIIVEKVERSKLFQEVTNSFFNTEKALLQAEAKAAEDARREVEAEVATAARDNDEGRQRRWNERRRMFLSSPNLFPFVFSSV

Homology

[Close]

BLAST of MELO3C033297.jh1 vs. NCBI nr
Match: KAA0041032.1 (transcription factor GTE9-like isoform X2 [Cucumis melo var. makuwa] >TYK15353.1 transcription factor GTE9-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (386), Expect = 3.35e-43
Identity = 99/158 (62.66%), Postives = 103/158 (65.19%), Query Frame = 0


Query: 9   TSGKVSWDRLSRRCVGHASGKPLPTPSFLTQSTTSGKPP--------------------- 68
           TSG +S DRL RRCVGHASGKPL  PSF  QST SGKP                      
Sbjct: 44  TSGAMSRDRLFRRCVGHASGKPLSIPSFPMQSTASGKPRLLFRCHVLRRESLPDRLYRAA 103

Query: 69  --PTGFTGD---KRDPEKVRTEREELERQQREDWSLYIDDDTIIVEKVERSKLFQEVTNS 128
                FT      R     R EREELERQQRE WSLYIDD TIIVEKVERSKLF EVT+S
Sbjct: 104 LLRNSFTNTILKARKKHLKRMEREELERQQREGWSLYIDDSTIIVEKVERSKLFHEVTHS 163

Query: 129 FFNTEKALLQAEAKAAEDARREVEAEVATAARD-NDEG 139
           FFNTEKALLQAEAK  EDARR+ EAEVA AARD ND+G
Sbjct: 164 FFNTEKALLQAEAKVTEDARRKAEAEVAAAARDGNDDG 201

[Close]

BLAST of MELO3C033297.jh1 vs. NCBI nr
Match: TYK08639.1 (transcription factor GTE10 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (325), Expect = 1.98e-34
Identity = 75/88 (85.23%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 53  GDKRDPEKVRTEREELERQQREDWSLYIDDDTIIVEKVERSKLFQEVTNSFFNTEKALLQ 112
           GDKRDPEKVR EREELERQQRE  SLYIDD TIIVEKVERSKLFQEVTNSFFN EKALLQ
Sbjct: 37  GDKRDPEKVRMEREELERQQRESLSLYIDDSTIIVEKVERSKLFQEVTNSFFNIEKALLQ 96

Query: 113 AEAKAAEDARREVEAEVATAARD-NDEG 139
           AEAKA EDA+R+ EAEVA AAR+ ND+G
Sbjct: 97  AEAKAVEDAQRKAEAEVAAAARNGNDDG 124

[Close]

BLAST of MELO3C033297.jh1 vs. NCBI nr
Match: KAA0033236.1 (transcription factor GTE10 [Cucumis melo var. makuwa] >TYK20412.1 transcription factor GTE10 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (297), Expect = 5.79e-31
Identity = 64/86 (74.42%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 64  EREELERQQREDWSLYIDDDTIIVEKVERSKLFQEVTNSFFNTEKALLQAEAKAAEDARR 123
           E+ +LERQQRE WSLYIDD TI+VEKVERSKLFQE TNSFFNTEK LLQ + KA EDARR
Sbjct: 35  EKRKLERQQREGWSLYIDDSTIVVEKVERSKLFQEATNSFFNTEKTLLQVQTKAPEDARR 94

Query: 124 EVEAEVATAARDNDEGRQRRWNERRR 149
           + +AEVAT   D  EG QRRWN RRR
Sbjct: 95  KAKAEVATTMMDGGEGWQRRWNRRRR 120

[Close]

BLAST of MELO3C033297.jh1 vs. NCBI nr
Match: KAA0052254.1 (Nuclear protein X1 isoform 3 [Cucumis melo var. makuwa] >TYK01819.1 Nuclear protein X1 isoform 3 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 7.92e-22
Identity = 83/200 (41.50%), Postives = 92/200 (46.00%), Query Frame = 0


Query: 2   QFSASGQTSGKVSWDRLSRRCVGHASGKPLPTPSFLTQSTTSGKPP-------------- 61
           Q SAS QTSG+VS DRLSR CVG ASGKPLPTPSF  QSTTSGKP               
Sbjct: 47  QSSASRQTSGEVSRDRLSRSCVGQASGKPLPTPSFPMQSTTSGKPRLLSRRHVLRRKSLP 106

Query: 62  ----PTGFT------------------GDKRDPEKVRTEREELERQQREDWSLYIDDDTI 121
               P  F                   GDKRDPEKVR EREELERQQRE W         
Sbjct: 107 RQALPCSFVEEPFCRHYIESSRKALEKGDKRDPEKVRMEREELERQQREGW--------- 166

Query: 122 IVEKVERSKLFQEVTNSFFNTEKALLQAEAKAAEDARREVEAEVATAARDNDEGRQRRWN 165
                      +  TN      K  LQ+  + A      +E  +A+  +           
Sbjct: 167 -----------RRATNG--GRLKLKLQSRRRTA----MTIEGTIASYGK----------- 207

[Close]

BLAST of MELO3C033297.jh1 vs. NCBI nr
Match: KAA0035237.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK22392.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 5.42e-18
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 2   QFSASGQTSGKVSWDRLSRRCVGHASGKPLPTPSFLTQSTTSGKPPPTGFT 52
           Q S SGQTSG+VS DRL +RCVGHAS KPLPTPSF TQSTTSGKPPPT FT
Sbjct: 79  QSSVSGQTSGEVSRDRLFQRCVGHASEKPLPTPSFSTQSTTSGKPPPTDFT 129

[Close]

BLAST of MELO3C033297.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CTY1 (Transcription factor GTE9-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold719G00010 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 1.62e-43
Identity = 99/158 (62.66%), Postives = 103/158 (65.19%), Query Frame = 0


Query: 9   TSGKVSWDRLSRRCVGHASGKPLPTPSFLTQSTTSGKPP--------------------- 68
           TSG +S DRL RRCVGHASGKPL  PSF  QST SGKP                      
Sbjct: 44  TSGAMSRDRLFRRCVGHASGKPLSIPSFPMQSTASGKPRLLFRCHVLRRESLPDRLYRAA 103

Query: 69  --PTGFTGD---KRDPEKVRTEREELERQQREDWSLYIDDDTIIVEKVERSKLFQEVTNS 128
                FT      R     R EREELERQQRE WSLYIDD TIIVEKVERSKLF EVT+S
Sbjct: 104 LLRNSFTNTILKARKKHLKRMEREELERQQREGWSLYIDDSTIIVEKVERSKLFHEVTHS 163

Query: 129 FFNTEKALLQAEAKAAEDARREVEAEVATAARD-NDEG 139
           FFNTEKALLQAEAK  EDARR+ EAEVA AARD ND+G
Sbjct: 164 FFNTEKALLQAEAKVTEDARRKAEAEVAAAARDGNDDG 201

[Close]

BLAST of MELO3C033297.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CE63 (Transcription factor GTE10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00780 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 9.57e-35
Identity = 75/88 (85.23%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 53  GDKRDPEKVRTEREELERQQREDWSLYIDDDTIIVEKVERSKLFQEVTNSFFNTEKALLQ 112
           GDKRDPEKVR EREELERQQRE  SLYIDD TIIVEKVERSKLFQEVTNSFFN EKALLQ
Sbjct: 37  GDKRDPEKVRMEREELERQQRESLSLYIDDSTIIVEKVERSKLFQEVTNSFFNIEKALLQ 96

Query: 113 AEAKAAEDARREVEAEVATAARD-NDEG 139
           AEAKA EDA+R+ EAEVA AAR+ ND+G
Sbjct: 97  AEAKAVEDAQRKAEAEVAAAARNGNDDG 124

[Close]

BLAST of MELO3C033297.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DA12 (Transcription factor GTE10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold590G00040 PE=4 SV=1)

HSP 1 Score: 119 bits (297), Expect = 2.80e-31
Identity = 64/86 (74.42%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 64  EREELERQQREDWSLYIDDDTIIVEKVERSKLFQEVTNSFFNTEKALLQAEAKAAEDARR 123
           E+ +LERQQRE WSLYIDD TI+VEKVERSKLFQE TNSFFNTEK LLQ + KA EDARR
Sbjct: 35  EKRKLERQQREGWSLYIDDSTIVVEKVERSKLFQEATNSFFNTEKTLLQVQTKAPEDARR 94

Query: 124 EVEAEVATAARDNDEGRQRRWNERRR 149
           + +AEVAT   D  EG QRRWN RRR
Sbjct: 95  KAKAEVATTMMDGGEGWQRRWNRRRR 120

[Close]

BLAST of MELO3C033297.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UA68 (Nuclear protein X1 isoform 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00600 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.84e-22
Identity = 83/200 (41.50%), Postives = 92/200 (46.00%), Query Frame = 0


Query: 2   QFSASGQTSGKVSWDRLSRRCVGHASGKPLPTPSFLTQSTTSGKPP-------------- 61
           Q SAS QTSG+VS DRLSR CVG ASGKPLPTPSF  QSTTSGKP               
Sbjct: 47  QSSASRQTSGEVSRDRLSRSCVGQASGKPLPTPSFPMQSTTSGKPRLLSRRHVLRRKSLP 106

Query: 62  ----PTGFT------------------GDKRDPEKVRTEREELERQQREDWSLYIDDDTI 121
               P  F                   GDKRDPEKVR EREELERQQRE W         
Sbjct: 107 RQALPCSFVEEPFCRHYIESSRKALEKGDKRDPEKVRMEREELERQQREGW--------- 166

Query: 122 IVEKVERSKLFQEVTNSFFNTEKALLQAEAKAAEDARREVEAEVATAARDNDEGRQRRWN 165
                      +  TN      K  LQ+  + A      +E  +A+  +           
Sbjct: 167 -----------RRATNG--GRLKLKLQSRRRTA----MTIEGTIASYGK----------- 207

[Close]

BLAST of MELO3C033297.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T0X7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00160 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.62e-18
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 2   QFSASGQTSGKVSWDRLSRRCVGHASGKPLPTPSFLTQSTTSGKPPPTGFT 52
           Q S SGQTSG+VS DRL +RCVGHAS KPLPTPSF TQSTTSGKPPPT FT
Sbjct: 79  QSSVSGQTSGEVSRDRLFQRCVGHASEKPLPTPSFSTQSTTSGKPPPTDFT 129

The following BLAST results are available for this feature:

BLAST of MELO3C033297.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041032.1	3.35e-43	62.66	transcription factor GTE9-like isoform X2 [Cucumis melo var. makuwa] >TYK15353.1...	[more]
TYK08639.1	1.98e-34	85.23	transcription factor GTE10 [Cucumis melo var. makuwa]	[more]
KAA0033236.1	5.79e-31	74.42	transcription factor GTE10 [Cucumis melo var. makuwa] >TYK20412.1 transcription ...	[more]
KAA0052254.1	7.92e-22	41.50	Nuclear protein X1 isoform 3 [Cucumis melo var. makuwa] >TYK01819.1 Nuclear prot...	[more]
KAA0035237.1	5.42e-18	82.35	gag/pol protein [Cucumis melo var. makuwa] >TYK22392.1 gag/pol protein [Cucumis ...	[more]

BLAST of MELO3C033297.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033297.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CTY1	1.62e-43	62.66	Transcription factor GTE9-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3CE63	9.57e-35	85.23	Transcription factor GTE10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5D3DA12	2.80e-31	74.42	Transcription factor GTE10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7UA68	3.84e-22	41.50	Nuclear protein X1 isoform 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7T0X7	2.62e-18	82.35	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G0016...	[more]

BLAST of MELO3C033297.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 108..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033297.jh1.t1	MELO3C033297.jh1.t1	mRNA