MELO3C033297 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033297
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Transcription factor GTE10
Location	chr08: 16996084 .. 16996806 (-)
RNA-Seq Expression	MELO3C033297
Synteny	MELO3C033297

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTTCTCGGCGTCGGGACAAACGTCGGGGAAAGTGAGTTGGGATAGGCTTTCCCGACGCTGTGTTGGTCACGCGTCGGGAAAGCCTCTCCCGACACCGTCTTTCCTGACGCAATCCACGACGTCAGGAAAGCCTCCCCCGACAGGCTTTACCGTGCAGATTTGTTAAGGAATCGTTTTGCCGACACTATACTGAAAGCTCGAGAAAGGCACTTGAAAAGGTTCGTTAAACTTGAGATTTTTCTTGTTTGTCCAATGTTAGGTCAACCCTATGATGCACAGAGGCACACATATTCATTCAATGAAAGTTGTTTCAATAAAAAAAAATATTCATTTAAGATATATTTGTTTAGAAAGTTATTGACTGACTTAGCTACAGGGTGACAAACGGGATCCTGAAAAAGTGAGAACGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAAGATTGGAGTCTTTACATTGATGACGACACAATCATAGTAGAGAAAGTAGAGCGATCAAAACTATTTCAGGAAGTTACTAATTCCTTTTTCAATACAGAAAAAGCACTGTTGCAAGCAGAGGCAAAAGCCGCAGAGGATGCTCGGAGGGAGGTTGAAGCTGAAGTTGCGACCGCGGCGAGGGACAACGATGAGGGACGACAACGACGATGGAACGAACGGCGACGAATGTTTCTCTCTTCGCCGAACCTTTTCCCTTTCGTTTTCAGTTCTGTGTAA

mRNA sequence

ATGCAGTTCTCGGCGTCGGGACAAACGTCGGGGAAAGTGAGTTGGGATAGGCTTTCCCGACGCTGTGTTGGTCACGCGTCGGGAAAGCCTCTCCCGACACCGTCTTTCCTGACGCAATCCACGACGTCAGGAAAGCCTCCCCCGACAGGCTTTACCGGTGACAAACGGGATCCTGAAAAAGTGAGAACGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAAGATTGGAGTCTTTACATTGATGACGACACAATCATAGTAGAGAAAGTAGAGCGATCAAAACTATTTCAGGAAGTTACTAATTCCTTTTTCAATACAGAAAAAGCACTGTTGCAAGCAGAGGCAAAAGCCGCAGAGGATGCTCGGAGGGAGGTTGAAGCTGAAGTTGCGACCGCGGCGAGGGACAACGATGAGGGACGACAACGACGATGGAACGAACGGCGACGAATGTTTCTCTCTTCGCCGAACCTTTTCCCTTTCGTTTTCAGTTCTGTGTAA

Coding sequence (CDS)

ATGCAGTTCTCGGCGTCGGGACAAACGTCGGGGAAAGTGAGTTGGGATAGGCTTTCCCGACGCTGTGTTGGTCACGCGTCGGGAAAGCCTCTCCCGACACCGTCTTTCCTGACGCAATCCACGACGTCAGGAAAGCCTCCCCCGACAGGCTTTACCGGTGACAAACGGGATCCTGAAAAAGTGAGAACGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAAGATTGGAGTCTTTACATTGATGACGACACAATCATAGTAGAGAAAGTAGAGCGATCAAAACTATTTCAGGAAGTTACTAATTCCTTTTTCAATACAGAAAAAGCACTGTTGCAAGCAGAGGCAAAAGCCGCAGAGGATGCTCGGAGGGAGGTTGAAGCTGAAGTTGCGACCGCGGCGAGGGACAACGATGAGGGACGACAACGACGATGGAACGAACGGCGACGAATGTTTCTCTCTTCGCCGAACCTTTTCCCTTTCGTTTTCAGTTCTGTGTAA

Protein sequence

MQFSASGQTSGKVSWDRLSRRCVGHASGKPLPTPSFLTQSTTSGKPPPTGFTGDKRDPEKVRTEREELERQQREDWSLYIDDDTIIVEKVERSKLFQEVTNSFFNTEKALLQAEAKAAEDARREVEAEVATAARDNDEGRQRRWNERRRMFLSSPNLFPFVFSSV

Homology

[Close]

BLAST of MELO3C033297 vs. NCBI nr
Match: KAA0041032.1 (transcription factor GTE9-like isoform X2 [Cucumis melo var. makuwa] >TYK15353.1 transcription factor GTE9-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-33
Identity = 99/158 (62.66%), Postives = 103/158 (65.19%), Query Frame = 0


Query: 9   TSGKVSWDRLSRRCVGHASGKPLPTPSFLTQSTTSGKPP--------------------- 68
           TSG +S DRL RRCVGHASGKPL  PSF  QST SGKP                      
Sbjct: 44  TSGAMSRDRLFRRCVGHASGKPLSIPSFPMQSTASGKPRLLFRCHVLRRESLPDRLYRAA 103

Query: 69  --PTGFTG---DKRDPEKVRTEREELERQQREDWSLYIDDDTIIVEKVERSKLFQEVTNS 128
                FT      R     R EREELERQQRE WSLYIDD TIIVEKVERSKLF EVT+S
Sbjct: 104 LLRNSFTNTILKARKKHLKRMEREELERQQREGWSLYIDDSTIIVEKVERSKLFHEVTHS 163

Query: 129 FFNTEKALLQAEAKAAEDARREVEAEVATAARD-NDEG 140
           FFNTEKALLQAEAK  EDARR+ EAEVA AARD ND+G
Sbjct: 164 FFNTEKALLQAEAKVTEDARRKAEAEVAAAARDGNDDG 201

[Close]

BLAST of MELO3C033297 vs. NCBI nr
Match: TYK08639.1 (transcription factor GTE10 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 7.5e-27
Identity = 82/114 (71.93%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 53  GDKRDPEKVRTEREELERQQREDWSLYIDDDTIIVEKVERSKLFQEVTNSFFNTEKALLQ 112
           GDKRDPEKVR EREELERQQRE  SLYIDD TIIVEKVERSKLFQEVTNSFFN EKALLQ
Sbjct: 37  GDKRDPEKVRMEREELERQQRESLSLYIDDSTIIVEKVERSKLFQEVTNSFFNIEKALLQ 96

Query: 113 AEAKAAEDARREVEAEVATAAR----DNDEGRQRRWNERRRMFLSSPNLFPFVF 163
           AEAKA EDA+R+ EAEVA AAR    D  +G + R      +F S P  FPF F
Sbjct: 97  AEAKAVEDAQRKAEAEVAAAARNGNDDGTDGGELRTTTNVSLF-SEP--FPFHF 147

[Close]

BLAST of MELO3C033297 vs. NCBI nr
Match: KAA0033236.1 (transcription factor GTE10 [Cucumis melo var. makuwa] >TYK20412.1 transcription factor GTE10 [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 7.7e-24
Identity = 64/86 (74.42%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 64  EREELERQQREDWSLYIDDDTIIVEKVERSKLFQEVTNSFFNTEKALLQAEAKAAEDARR 123
           E+ +LERQQRE WSLYIDD TI+VEKVERSKLFQE TNSFFNTEK LLQ + KA EDARR
Sbjct: 35  EKRKLERQQREGWSLYIDDSTIVVEKVERSKLFQEATNSFFNTEKTLLQVQTKAPEDARR 94

Query: 124 EVEAEVATAARDNDEGRQRRWNERRR 150
           + +AEVAT   D  EG QRRWN RRR
Sbjct: 95  KAKAEVATTMMDGGEGWQRRWNRRRR 120

[Close]

BLAST of MELO3C033297 vs. NCBI nr
Match: KAA0052254.1 (Nuclear protein X1 isoform 3 [Cucumis melo var. makuwa] >TYK01819.1 Nuclear protein X1 isoform 3 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 9.1e-17
Identity = 83/200 (41.50%), Postives = 92/200 (46.00%), Query Frame = 0


Query: 2   QFSASGQTSGKVSWDRLSRRCVGHASGKPLPTPSFLTQSTTSGKPP-------------- 61
           Q SAS QTSG+VS DRLSR CVG ASGKPLPTPSF  QSTTSGKP               
Sbjct: 47  QSSASRQTSGEVSRDRLSRSCVGQASGKPLPTPSFPMQSTTSGKPRLLSRRHVLRRKSLP 106

Query: 62  ----PTGFT------------------GDKRDPEKVRTEREELERQQREDWSLYIDDDTI 121
               P  F                   GDKRDPEKVR EREELERQQRE W         
Sbjct: 107 RQALPCSFVEEPFCRHYIESSRKALEKGDKRDPEKVRMEREELERQQREGW--------- 166

Query: 122 IVEKVERSKLFQEVTNSFFNTEKALLQAEAKAAEDARREVEAEVATAARDNDEGRQRRWN 166
                      +  TN      K  LQ+  + A      +E  +A+              
Sbjct: 167 -----------RRATNG--GRLKLKLQSRRRTA----MTIEGTIASYG------------ 207

[Close]

BLAST of MELO3C033297 vs. NCBI nr
Match: KAA0035237.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK22392.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-12
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 2   QFSASGQTSGKVSWDRLSRRCVGHASGKPLPTPSFLTQSTTSGKPPPTGFT 53
           Q S SGQTSG+VS DRL +RCVGHAS KPLPTPSF TQSTTSGKPPPT FT
Sbjct: 79  QSSVSGQTSGEVSRDRLFQRCVGHASEKPLPTPSFSTQSTTSGKPPPTDFT 129

[Close]

BLAST of MELO3C033297 vs. ExPASy TrEMBL
Match: A0A5D3CTY1 (Transcription factor GTE9-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold719G00010 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 5.2e-34
Identity = 99/158 (62.66%), Postives = 103/158 (65.19%), Query Frame = 0


Query: 9   TSGKVSWDRLSRRCVGHASGKPLPTPSFLTQSTTSGKPP--------------------- 68
           TSG +S DRL RRCVGHASGKPL  PSF  QST SGKP                      
Sbjct: 44  TSGAMSRDRLFRRCVGHASGKPLSIPSFPMQSTASGKPRLLFRCHVLRRESLPDRLYRAA 103

Query: 69  --PTGFTG---DKRDPEKVRTEREELERQQREDWSLYIDDDTIIVEKVERSKLFQEVTNS 128
                FT      R     R EREELERQQRE WSLYIDD TIIVEKVERSKLF EVT+S
Sbjct: 104 LLRNSFTNTILKARKKHLKRMEREELERQQREGWSLYIDDSTIIVEKVERSKLFHEVTHS 163

Query: 129 FFNTEKALLQAEAKAAEDARREVEAEVATAARD-NDEG 140
           FFNTEKALLQAEAK  EDARR+ EAEVA AARD ND+G
Sbjct: 164 FFNTEKALLQAEAKVTEDARRKAEAEVAAAARDGNDDG 201

[Close]

BLAST of MELO3C033297 vs. ExPASy TrEMBL
Match: A0A5D3CE63 (Transcription factor GTE10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00780 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.6e-27
Identity = 82/114 (71.93%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 53  GDKRDPEKVRTEREELERQQREDWSLYIDDDTIIVEKVERSKLFQEVTNSFFNTEKALLQ 112
           GDKRDPEKVR EREELERQQRE  SLYIDD TIIVEKVERSKLFQEVTNSFFN EKALLQ
Sbjct: 37  GDKRDPEKVRMEREELERQQRESLSLYIDDSTIIVEKVERSKLFQEVTNSFFNIEKALLQ 96

Query: 113 AEAKAAEDARREVEAEVATAAR----DNDEGRQRRWNERRRMFLSSPNLFPFVF 163
           AEAKA EDA+R+ EAEVA AAR    D  +G + R      +F S P  FPF F
Sbjct: 97  AEAKAVEDAQRKAEAEVAAAARNGNDDGTDGGELRTTTNVSLF-SEP--FPFHF 147

[Close]

BLAST of MELO3C033297 vs. ExPASy TrEMBL
Match: A0A5D3DA12 (Transcription factor GTE10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold590G00040 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.7e-24
Identity = 64/86 (74.42%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 64  EREELERQQREDWSLYIDDDTIIVEKVERSKLFQEVTNSFFNTEKALLQAEAKAAEDARR 123
           E+ +LERQQRE WSLYIDD TI+VEKVERSKLFQE TNSFFNTEK LLQ + KA EDARR
Sbjct: 35  EKRKLERQQREGWSLYIDDSTIVVEKVERSKLFQEATNSFFNTEKTLLQVQTKAPEDARR 94

Query: 124 EVEAEVATAARDNDEGRQRRWNERRR 150
           + +AEVAT   D  EG QRRWN RRR
Sbjct: 95  KAKAEVATTMMDGGEGWQRRWNRRRR 120

[Close]

BLAST of MELO3C033297 vs. ExPASy TrEMBL
Match: A0A5A7UA68 (Nuclear protein X1 isoform 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00600 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.4e-17
Identity = 83/200 (41.50%), Postives = 92/200 (46.00%), Query Frame = 0


Query: 2   QFSASGQTSGKVSWDRLSRRCVGHASGKPLPTPSFLTQSTTSGKPP-------------- 61
           Q SAS QTSG+VS DRLSR CVG ASGKPLPTPSF  QSTTSGKP               
Sbjct: 47  QSSASRQTSGEVSRDRLSRSCVGQASGKPLPTPSFPMQSTTSGKPRLLSRRHVLRRKSLP 106

Query: 62  ----PTGFT------------------GDKRDPEKVRTEREELERQQREDWSLYIDDDTI 121
               P  F                   GDKRDPEKVR EREELERQQRE W         
Sbjct: 107 RQALPCSFVEEPFCRHYIESSRKALEKGDKRDPEKVRMEREELERQQREGW--------- 166

Query: 122 IVEKVERSKLFQEVTNSFFNTEKALLQAEAKAAEDARREVEAEVATAARDNDEGRQRRWN 166
                      +  TN      K  LQ+  + A      +E  +A+              
Sbjct: 167 -----------RRATNG--GRLKLKLQSRRRTA----MTIEGTIASYG------------ 207

[Close]

BLAST of MELO3C033297 vs. ExPASy TrEMBL
Match: A0A5A7T0X7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00160 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.6e-13
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 2   QFSASGQTSGKVSWDRLSRRCVGHASGKPLPTPSFLTQSTTSGKPPPTGFT 53
           Q S SGQTSG+VS DRL +RCVGHAS KPLPTPSF TQSTTSGKPPPT FT
Sbjct: 79  QSSVSGQTSGEVSRDRLFQRCVGHASEKPLPTPSFSTQSTTSGKPPPTDFT 129

The following BLAST results are available for this feature:

BLAST of MELO3C033297 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041032.1	1.1e-33	62.66	transcription factor GTE9-like isoform X2 [Cucumis melo var. makuwa] >TYK15353.1...	[more]
TYK08639.1	7.5e-27	71.93	transcription factor GTE10 [Cucumis melo var. makuwa]	[more]
KAA0033236.1	7.7e-24	74.42	transcription factor GTE10 [Cucumis melo var. makuwa] >TYK20412.1 transcription ...	[more]
KAA0052254.1	9.1e-17	41.50	Nuclear protein X1 isoform 3 [Cucumis melo var. makuwa] >TYK01819.1 Nuclear prot...	[more]
KAA0035237.1	1.4e-12	82.35	gag/pol protein [Cucumis melo var. makuwa] >TYK22392.1 gag/pol protein [Cucumis ...	[more]

BLAST of MELO3C033297 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033297 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CTY1	5.2e-34	62.66	Transcription factor GTE9-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3CE63	3.6e-27	71.93	Transcription factor GTE10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5D3DA12	3.7e-24	74.42	Transcription factor GTE10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7UA68	4.4e-17	41.50	Nuclear protein X1 isoform 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7T0X7	6.6e-13	82.35	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G0016...	[more]

BLAST of MELO3C033297 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 108..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033297.1	MELO3C033297.1	mRNA