MELO3C033278 (gene) Melon (DHL92) v4

Overview
NameMELO3C033278
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGag-pol polyprotein
Locationchr08: 15664535 .. 15664769 (+)
RNA-Seq ExpressionMELO3C033278
SyntenyMELO3C033278
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGAGTATCATGATTTTGGGAATCGTTGTGGTGGCAAGCTCTCAGTCTTCGCATCTATCTATTGATGTTTTGGCTTCTGTCTTATCTCGAGGAACATTGTCAGTTTGGTCAGTGAATGAAATTTGTGTTGTATCCCTTAGTGTTAAATCTGTCATACTCCATAAGATTGACTTTACAAACTGGTTCCCTTCGTCGCGTGGTCCTAGTGCAGCAGATCAATCTCAAGAGTAG

mRNA sequence

ATGTTTGAGTATCATGATTTTGGGAATCGTTGTGGTGGCAAGCTCTCAGTCTTCGCATCTATCTATTGATGTTTTGGCTTCTGTCTTATCTCGAGGAACATTGTCAGTTTGGTCAGTGAATGAAATTTGTGTTGTATCCCTTAGTGTTAAATCTGTCATACTCCATAAGATTGACTTTACAAACTGGTTCCCTTCGTCGCGTGGTCCTAGTGCAGCAGATCAATCTCAAGAGTAG

Coding sequence (CDS)

ATGATTTTGGGAATCGTTGTGGTGGCAAGCTCTCAGTCTTCGCATCTATCTATTGATGTTTTGGCTTCTGTCTTATCTCGAGGAACATTGTCAGTTTGGTCAGTGAATGAAATTTGTGTTGTATCCCTTAGTGTTAAATCTGTCATACTCCATAAGATTGACTTTACAAACTGGTTCCCTTCGTCGCGTGGTCCTAGTGCAGCAGATCAATCTCAAGAGTAG

Protein sequence

MILGIVVVASSQSSHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFPSSRGPSAADQSQE
Homology
BLAST of MELO3C033278 vs. NCBI nr
Match: KAA0045422.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04274.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 136.7 bits (343), Expect = 7.8e-29
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1   MILGIVVVASSQSSHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFP 60
           MILGIVVVASSQSSHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFP
Sbjct: 294 MILGIVVVASSQSSHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFP 353

Query: 61  SSRGPSAADQSQE 74
           SSRGPSAADQSQE
Sbjct: 354 SSRGPSAADQSQE 366

BLAST of MELO3C033278 vs. NCBI nr
Match: KAA0043000.1 (uncharacterized protein E6C27_scaffold75G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.2e-21
Identity = 62/71 (87.32%), Postives = 62/71 (87.32%), Query Frame = 0

Query: 3  LGIVVVASSQSSHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFPSS 62
          LGI VVASSQS HLSID LASVLSRGTLSVW VNEI  VSLSVK VILHKIDFTNWFPSS
Sbjct: 8  LGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEISAVSLSVKHVILHKIDFTNWFPSS 67

Query: 63 RGPSAADQSQE 74
            PSAADQSQE
Sbjct: 68 CAPSAADQSQE 78

BLAST of MELO3C033278 vs. NCBI nr
Match: TYK05700.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-20
Identity = 59/71 (83.10%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 3   LGIVVVASSQSSHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFPSS 62
           LGI VVASSQSSHLSID L  VLSRGTL VWSVNE   VSLSVK VIL+KIDFTNWFPSS
Sbjct: 354 LGIAVVASSQSSHLSIDDLTYVLSRGTLPVWSVNETSAVSLSVKYVILYKIDFTNWFPSS 413

Query: 63  RGPSAADQSQE 74
           R PS ADQSQE
Sbjct: 414 RAPSVADQSQE 424

BLAST of MELO3C033278 vs. NCBI nr
Match: KAA0058376.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26885.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 6.2e-18
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 0

Query: 3   LGIVVVASSQSSHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFPSS 62
           LGI +VA+SQSSHLS D L SVLS+GTLSVWSVNEI VVSLSVK VILHKI  TNWF SS
Sbjct: 73  LGITMVANSQSSHLSNDELTSVLSQGTLSVWSVNEISVVSLSVKYVILHKIGITNWFSSS 132

Query: 63  RGPSAADQSQE 74
              SAADQSQE
Sbjct: 133 HASSAADQSQE 143

BLAST of MELO3C033278 vs. NCBI nr
Match: KAA0041548.1 (envelope-like protein [Cucumis melo var. makuwa] >TYK19706.1 envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-15
Identity = 49/60 (81.67%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 14  SHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFPSSRGPSAADQSQE 73
           SHLSID L SVLSRGTLSVW VNEI  VSLSVK VILH+IDFTNWFPSS   S ADQSQE
Sbjct: 71  SHLSIDDLTSVLSRGTLSVWPVNEISAVSLSVKYVILHEIDFTNWFPSSYASSEADQSQE 130

BLAST of MELO3C033278 vs. ExPASy TrEMBL
Match: A0A5A7TPX9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4559G00270 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.8e-29
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1   MILGIVVVASSQSSHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFP 60
           MILGIVVVASSQSSHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFP
Sbjct: 294 MILGIVVVASSQSSHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFP 353

Query: 61  SSRGPSAADQSQE 74
           SSRGPSAADQSQE
Sbjct: 354 SSRGPSAADQSQE 366

BLAST of MELO3C033278 vs. ExPASy TrEMBL
Match: A0A5A7TI55 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00740 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.9e-22
Identity = 62/71 (87.32%), Postives = 62/71 (87.32%), Query Frame = 0

Query: 3  LGIVVVASSQSSHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFPSS 62
          LGI VVASSQS HLSID LASVLSRGTLSVW VNEI  VSLSVK VILHKIDFTNWFPSS
Sbjct: 8  LGITVVASSQSLHLSIDDLASVLSRGTLSVWPVNEISAVSLSVKHVILHKIDFTNWFPSS 67

Query: 63 RGPSAADQSQE 74
            PSAADQSQE
Sbjct: 68 CAPSAADQSQE 78

BLAST of MELO3C033278 vs. ExPASy TrEMBL
Match: A0A5D3C2Y0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001810 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-20
Identity = 59/71 (83.10%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 3   LGIVVVASSQSSHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFPSS 62
           LGI VVASSQSSHLSID L  VLSRGTL VWSVNE   VSLSVK VIL+KIDFTNWFPSS
Sbjct: 354 LGIAVVASSQSSHLSIDDLTYVLSRGTLPVWSVNETSAVSLSVKYVILYKIDFTNWFPSS 413

Query: 63  RGPSAADQSQE 74
           R PS ADQSQE
Sbjct: 414 RAPSVADQSQE 424

BLAST of MELO3C033278 vs. ExPASy TrEMBL
Match: A0A5A7UW34 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2133G00280 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.0e-18
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 0

Query: 3   LGIVVVASSQSSHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFPSS 62
           LGI +VA+SQSSHLS D L SVLS+GTLSVWSVNEI VVSLSVK VILHKI  TNWF SS
Sbjct: 73  LGITMVANSQSSHLSNDELTSVLSQGTLSVWSVNEISVVSLSVKYVILHKIGITNWFSSS 132

Query: 63  RGPSAADQSQE 74
              SAADQSQE
Sbjct: 133 HASSAADQSQE 143

BLAST of MELO3C033278 vs. ExPASy TrEMBL
Match: A0A5A7TF63 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G001080 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.2e-16
Identity = 49/60 (81.67%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 14  SHLSIDVLASVLSRGTLSVWSVNEICVVSLSVKSVILHKIDFTNWFPSSRGPSAADQSQE 73
           SHLSID L SVLSRGTLSVW VNEI  VSLSVK VILH+IDFTNWFPSS   S ADQSQE
Sbjct: 71  SHLSIDDLTSVLSRGTLSVWPVNEISAVSLSVKYVILHEIDFTNWFPSSYASSEADQSQE 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0045422.17.8e-29100.00gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04274.1 gag-pol polyprotein [... [more]
KAA0043000.11.2e-2187.32uncharacterized protein E6C27_scaffold75G00740 [Cucumis melo var. makuwa][more]
TYK05700.13.0e-2083.10gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0058376.16.2e-1878.87gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26885.1 gag-pol polyprotein [... [more]
KAA0041548.11.7e-1581.67envelope-like protein [Cucumis melo var. makuwa] >TYK19706.1 envelope-like prote... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TPX93.8e-29100.00Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4559... [more]
A0A5A7TI555.9e-2287.32Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C2Y01.4e-2083.10Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G0... [more]
A0A5A7UW343.0e-1878.87Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2133... [more]
A0A5A7TF638.2e-1681.67Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033278.1MELO3C033278.1mRNA