MELO3C033267 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033267
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Gag-pol polyprotein
Location	chr08: 15016627 .. 15017932 (-)
RNA-Seq Expression	MELO3C033267
Synteny	MELO3C033267

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAATACTCACAAGGGGCCTTATGTGCCAGAACAGTCTGAAGATGCACCTAATGTCATCACTTCTTCACCTTCTCCAGTACATCATGTAAGGGTCAGAGGTCGCTGTTTCAAAAGCACTCCTCTCTAGAGACCCTATCGGCTTCCATCTGAGAAAGTGCAGGGAGAAGCCATCAGTAGGTTGCAGGAGTCATTACGCTCTGAGGCGGTGCTTGAAGTCAGGAAGTCTGCTGCTCCTGTTTCTCCTGCTGTGCATGCACATCGAGCTTCTGAGGCCACTGTATTGGATATGGATTCAGATGATCAGGATAATGTTCTGTTAATCTGTTTGTTGAAGAAACCCTCAGAGCCAGTTACAGCCGAGAGGCTCCCTTCTGATCCTCCGAGTGCCATTCACTTTCAAGAGAGCTCATCAATCGAAGGGGTATTCATTCCAACTTCAGGAGACCCTCGACACTCACCAGCTATACCTTTACGTCATTCTCCCTCTGTTTATCCTTCTCGATCGAAACTACCTACTTCGCAACCGGATGCGGTGCCTGTACATTCCTAAAATCGCTACTGCTGTACGTGAGGAACAGACTGTTGGTTCTCAAAATGATGATCAGTGTACTTCTTTTAACCAGACTGAGATACCTCTTGAAGACATTCCTCCTCCTACTGATGATCCCATTGTACCATCTTCTGAAAGAAGGCCAGAATCTCCTAAAGGTCATAAACCCCCGAAAAGAAAAACTCAACAGGCTAGGAGAAATGTTACCACAAAAATAGGCAGAAAGAAAATTCCTGCGAATGTTCCATCCGTTCCAATTGATGGAATTTTGTTTCACCACGAGGAAAGTGTTCAACGCTAGAAGTTTGTGATGTAGAGGAGAATTGTCGATGAGGTAAATATATCTAACAAACACCAATCTTGCATAAGTATCAAGGACCTTATCCATAAGGCTGACTTAGAAAAAACTATCTCGAATGTTGGCTCTTTTTATCCCTAGCTAATTAGAGAATTTATCATCAATCTGTCTGATGAGTTTAATGATCCAAGTAGTGCTGACTATCAGACGGTGCACATTAGAGGGTTAAAATTTGTGATTTCACCTGCTGTGATAAATGGTTTTCTTGGAAATACTGTTGATATGGACTGCTCTCCATTATGTCCTACTACTGAAGTTCTAGCTACTGTCTTATTTGGAGGGACCTTGTCCACATGGCCTGTGAATGGAATCCCTGCAGCTGCTCTCAGCATCAAGTATGCCATTCTGCACAAGATTGGCATTGCCAATTGGTTTCCTTCCTCACATGCCTAA

mRNA sequence

ATGGTGAATACTCACAAGGGGCCTTATGTGCCAGAACAGTCTGAAGATGCACCTAATGTCATCACTTCTTCACCTTCTCCAGTACATCATAGACCCTATCGGCTTCCATCTGAGAAAGTGCAGGGAGAAGCCATCAGTAGGTTGCAGGAGTCATTACGCTCTGAGGCGGTGCTTGAAGTCAGGAAGTCTGCTGCTCCTGTTTCTCCTGCTGTGCATGCACATCGAGCTTCTGAGGCCACTGTATTGGATATGGATTCAGATGATCAGGATAATGTTCTGTTAATCTGTTTGTTGAAGAAACCCTCAGAGCCAGTTACAGCCGAGAGGCTCCCTTCTGATCCTCCGAGTGCCATTCACTTTCAAGAGAGCTCATCAATCGAAGGGAGACCCTCGACACTCACCAGCTATACCTTTACGTCATTCTCCCTCTGTTTATCCTTCTCGATCGAAACTACCTACTTCGCAACCGGATGCGGTGCCTGTACATTCCTAAAATCGCTACTGCTGTACGTGAGGAACAGACTGTTGGTTCTCAAAATGATGATCAGTGTACTTCTTTTAACCAGACTGAGATACCTCTTGAAGACATTCCTCCTCCTACTGATGATCCCATTGTACCATCTTCTGAAAGAAGGCCAGAATCTCCTAAAGGTCATAAACCCCCGAAAAGAAAAACTCAACAGGCTAGGAGAAATGTTACCACAAAAATAGGCAGAAAGAAAATTCCTGCGAATGTTCCATCCGTTCCAATTGATGGAATTTTGTTTCACCACGAGGAAAGTCTAATTAGAGAATTTATCATCAATCTGTCTGATGAGTTTAATGATCCAAGTAGTGCTGACTATCAGACGGTGCACATTAGAGGGTTAAAATTTGTGATTTCACCTGCTGTGATAAATGGTTTTCTTGGAAATACTGTTGATATGGACTGCTCTCCATTATGTCCTACTACTGAAGTTCTAGCTACTGTCTTATTTGGAGGGACCTTGTCCACATGGCCTGTGAATGGAATCCCTGCAGCTGCTCTCAGCATCAAGTATGCCATTCTGCACAAGATTGGCATTGCCAATTGGTTTCCTTCCTCACATGCCTAA

Coding sequence (CDS)

ATGGTGAATACTCACAAGGGGCCTTATGTGCCAGAACAGTCTGAAGATGCACCTAATGTCATCACTTCTTCACCTTCTCCAGTACATCATAGACCCTATCGGCTTCCATCTGAGAAAGTGCAGGGAGAAGCCATCAGTAGGTTGCAGGAGTCATTACGCTCTGAGGCGGTGCTTGAAGTCAGGAAGTCTGCTGCTCCTGTTTCTCCTGCTGTGCATGCACATCGAGCTTCTGAGGCCACTGTATTGGATATGGATTCAGATGATCAGGATAATGTTCTGTTAATCTGTTTGTTGAAGAAACCCTCAGAGCCAGTTACAGCCGAGAGGCTCCCTTCTGATCCTCCGAGTGCCATTCACTTTCAAGAGAGCTCATCAATCGAAGGGAGACCCTCGACACTCACCAGCTATACCTTTACGTCATTCTCCCTCTGTTTATCCTTCTCGATCGAAACTACCTACTTCGCAACCGGATGCGGTGCCTGTACATTCCTAAAATCGCTACTGCTGTACGTGAGGAACAGACTGTTGGTTCTCAAAATGATGATCAGTGTACTTCTTTTAACCAGACTGAGATACCTCTTGAAGACATTCCTCCTCCTACTGATGATCCCATTGTACCATCTTCTGAAAGAAGGCCAGAATCTCCTAAAGGTCATAAACCCCCGAAAAGAAAAACTCAACAGGCTAGGAGAAATGTTACCACAAAAATAG

Protein sequence

MVNTHKGPYVPEQSEDAPNVITSSPSPVHHRPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEGRPSTLTSYTFTSFSLCLSFSIETTYFATGCGACTFLKSLLLYVRNRLLVLKMMISVLLLTRLRYLLKTFLLLLMIPLYHLLKEGQNLLKVINPRKEKLNRLGEMLPQK

Homology

[Close]

BLAST of MELO3C033267 vs. NCBI nr
Match: KAA0053200.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 4.6e-46
Identity = 106/117 (90.60%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 12   EQSEDAPNVITSSPSPVHHRPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAV 71
            EQSEDAPNVITSSPSPVHH           GEAISRLQESLRSEAVLEVRKSAAPVSPAV
Sbjct: 1100 EQSEDAPNVITSSPSPVHH-----------GEAISRLQESLRSEAVLEVRKSAAPVSPAV 1159

Query: 72   HAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG 129
            HAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG
Sbjct: 1160 HAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG 1205

[Close]

BLAST of MELO3C033267 vs. NCBI nr
Match: TYK00141.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 4.6e-46
Identity = 106/117 (90.60%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 12   EQSEDAPNVITSSPSPVHHRPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAV 71
            EQSEDAPNVITSSPSPVHH           GEAISRLQESLRSEAVLEVRKSAAPVSPAV
Sbjct: 1064 EQSEDAPNVITSSPSPVHH-----------GEAISRLQESLRSEAVLEVRKSAAPVSPAV 1123

Query: 72   HAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG 129
            HAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG
Sbjct: 1124 HAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG 1169

[Close]

BLAST of MELO3C033267 vs. NCBI nr
Match: XP_008465030.1 (PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo])

HSP 1 Score: 189.9 bits (481), Expect = 2.5e-44
Identity = 105/142 (73.94%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 1   MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAIS 60
           MVNTHKG YVP+QSEDAPN ITSSPSPVHH              + YRLP EKVQGEA S
Sbjct: 1   MVNTHKGSYVPKQSEDAPNAITSSPSPVHHVKVKGRRFKSTPPRKRYRLPYEKVQGEATS 60

Query: 61  RLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVT 120
           +LQESLRS+AV EV +SAAPVSPAVHA+RASEATV DMDSD QDNV LI LL KPS+PVT
Sbjct: 61  KLQESLRSKAVSEVGESAAPVSPAVHAYRASEATVSDMDSDYQDNVPLIHLLNKPSKPVT 120

Query: 121 AERLPSDPPSAIHFQESSSIEG 129
           AERLPSDPP +IH QESSS EG
Sbjct: 121 AERLPSDPPGSIHSQESSSTEG 142

[Close]

BLAST of MELO3C033267 vs. NCBI nr
Match: TYK11858.1 (envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 2.5e-44
Identity = 104/142 (73.24%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 1   MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAIS 60
           MVNT KG YVP+QSEDAPNVITSSP PV H              +PYR+PSEKVQG+A S
Sbjct: 1   MVNTRKGSYVPKQSEDAPNVITSSPPPVQHARVRRRWFKSTPSWKPYRIPSEKVQGDASS 60

Query: 61  RLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVT 120
           RLQESLRSEA+ EV +SAAP+S AVHAHRASEATV +MDSDDQDNV LI LLKKPS PVT
Sbjct: 61  RLQESLRSEAMPEVEESAAPISSAVHAHRASEATVSNMDSDDQDNVPLIRLLKKPSGPVT 120

Query: 121 AERLPSDPPSAIHFQESSSIEG 129
           AERLPSDPP +IH QESSS EG
Sbjct: 121 AERLPSDPPGSIHSQESSSTEG 142

[Close]

BLAST of MELO3C033267 vs. NCBI nr
Match: KAA0056211.1 (uncharacterized protein E6C27_scaffold85G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 2.1e-43
Identity = 104/142 (73.24%), Postives = 112/142 (78.87%), Query Frame = 0


Query: 1   MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAIS 60
           MVNTHK  YVP+QSEDAPN ITSSPSPVHH              + YRLP EKVQGEA S
Sbjct: 1   MVNTHKRSYVPKQSEDAPNAITSSPSPVHHVKVKGRRFKSTPPRKRYRLPYEKVQGEATS 60

Query: 61  RLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVT 120
           +LQESLRS+AV EV +SAAPVSPAVHA+RASEATV DMDSD QDNV LI LL KPS+PVT
Sbjct: 61  KLQESLRSKAVSEVGESAAPVSPAVHAYRASEATVSDMDSDYQDNVPLIHLLNKPSKPVT 120

Query: 121 AERLPSDPPSAIHFQESSSIEG 129
           AERLPSDPP +IH QESSS EG
Sbjct: 121 AERLPSDPPGSIHSQESSSTEG 142

[Close]

BLAST of MELO3C033267 vs. ExPASy TrEMBL
Match: A0A5A7UDB5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00250 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.2e-46
Identity = 106/117 (90.60%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 12   EQSEDAPNVITSSPSPVHHRPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAV 71
            EQSEDAPNVITSSPSPVHH           GEAISRLQESLRSEAVLEVRKSAAPVSPAV
Sbjct: 1100 EQSEDAPNVITSSPSPVHH-----------GEAISRLQESLRSEAVLEVRKSAAPVSPAV 1159

Query: 72   HAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG 129
            HAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG
Sbjct: 1160 HAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG 1205

[Close]

BLAST of MELO3C033267 vs. ExPASy TrEMBL
Match: A0A5D3BJZ7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00280 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.2e-46
Identity = 106/117 (90.60%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 12   EQSEDAPNVITSSPSPVHHRPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAV 71
            EQSEDAPNVITSSPSPVHH           GEAISRLQESLRSEAVLEVRKSAAPVSPAV
Sbjct: 1064 EQSEDAPNVITSSPSPVHH-----------GEAISRLQESLRSEAVLEVRKSAAPVSPAV 1123

Query: 72   HAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG 129
            HAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG
Sbjct: 1124 HAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG 1169

[Close]

BLAST of MELO3C033267 vs. ExPASy TrEMBL
Match: A0A5D3CL24 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold34870G00010 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.2e-44
Identity = 104/142 (73.24%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 1   MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAIS 60
           MVNT KG YVP+QSEDAPNVITSSP PV H              +PYR+PSEKVQG+A S
Sbjct: 1   MVNTRKGSYVPKQSEDAPNVITSSPPPVQHARVRRRWFKSTPSWKPYRIPSEKVQGDASS 60

Query: 61  RLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVT 120
           RLQESLRSEA+ EV +SAAP+S AVHAHRASEATV +MDSDDQDNV LI LLKKPS PVT
Sbjct: 61  RLQESLRSEAMPEVEESAAPISSAVHAHRASEATVSNMDSDDQDNVPLIRLLKKPSGPVT 120

Query: 121 AERLPSDPPSAIHFQESSSIEG 129
           AERLPSDPP +IH QESSS EG
Sbjct: 121 AERLPSDPPGSIHSQESSSTEG 142

[Close]

BLAST of MELO3C033267 vs. ExPASy TrEMBL
Match: A0A1S3CMY0 (uncharacterized protein LOC103502746 OS=Cucumis melo OX=3656 GN=LOC103502746 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.2e-44
Identity = 105/142 (73.94%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 1   MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAIS 60
           MVNTHKG YVP+QSEDAPN ITSSPSPVHH              + YRLP EKVQGEA S
Sbjct: 1   MVNTHKGSYVPKQSEDAPNAITSSPSPVHHVKVKGRRFKSTPPRKRYRLPYEKVQGEATS 60

Query: 61  RLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVT 120
           +LQESLRS+AV EV +SAAPVSPAVHA+RASEATV DMDSD QDNV LI LL KPS+PVT
Sbjct: 61  KLQESLRSKAVSEVGESAAPVSPAVHAYRASEATVSDMDSDYQDNVPLIHLLNKPSKPVT 120

Query: 121 AERLPSDPPSAIHFQESSSIEG 129
           AERLPSDPP +IH QESSS EG
Sbjct: 121 AERLPSDPPGSIHSQESSSTEG 142

[Close]

BLAST of MELO3C033267 vs. ExPASy TrEMBL
Match: A0A5A7URQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold85G00030 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-43
Identity = 104/142 (73.24%), Postives = 112/142 (78.87%), Query Frame = 0


Query: 1   MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAIS 60
           MVNTHK  YVP+QSEDAPN ITSSPSPVHH              + YRLP EKVQGEA S
Sbjct: 1   MVNTHKRSYVPKQSEDAPNAITSSPSPVHHVKVKGRRFKSTPPRKRYRLPYEKVQGEATS 60

Query: 61  RLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVT 120
           +LQESLRS+AV EV +SAAPVSPAVHA+RASEATV DMDSD QDNV LI LL KPS+PVT
Sbjct: 61  KLQESLRSKAVSEVGESAAPVSPAVHAYRASEATVSDMDSDYQDNVPLIHLLNKPSKPVT 120

Query: 121 AERLPSDPPSAIHFQESSSIEG 129
           AERLPSDPP +IH QESSS EG
Sbjct: 121 AERLPSDPPGSIHSQESSSTEG 142

The following BLAST results are available for this feature:

BLAST of MELO3C033267 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053200.1	4.6e-46	90.60	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK00141.1	4.6e-46	90.60	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
XP_008465030.1	2.5e-44	73.94	PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo]	[more]
TYK11858.1	2.5e-44	73.24	envelope-like protein [Cucumis melo var. makuwa]	[more]
KAA0056211.1	2.1e-43	73.24	uncharacterized protein E6C27_scaffold85G00030 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033267 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033267 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UDB5	2.2e-46	90.60	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192...	[more]
A0A5D3BJZ7	2.2e-46	90.60	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510...	[more]
A0A5D3CL24	1.2e-44	73.24	Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold34...	[more]
A0A1S3CMY0	1.2e-44	73.94	uncharacterized protein LOC103502746 OS=Cucumis melo OX=3656 GN=LOC103502746 PE=...	[more]
A0A5A7URQ6	1.0e-43	73.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C033267 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033267.1	MELO3C033267.1	mRNA