MELO3C033266 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033266
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	chr08: 15014721 .. 15016532 (-)
RNA-Seq Expression	MELO3C033266
Synteny	MELO3C033266

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGTCGTTTGGGGTCAAGGTTCTCTAGTCTGCTACTTCACCTAAATGGAGCGGTGCTTACTGCATCTGATGCTCCTGAACATGAACCTAAGACAATTGCACTTAGCTACAGACTCTTTCAAGGCAATCATGTGCTTGATATTGACCATGATGTGCATCCAACTCGAGGCCCACGTATTTTTGACTACTGACTGGGATGAATCTGCTGAAGGCTTCTATTTGGATCGTGAATTAGCTACCCGCATTATTAATTCCTTGATTGTTGAATCTCGTGCACTGACTAACTCCATCACTCTATTGTCTGACGTTGATTAGAGGTTGATGCTCTCATTCGAAATTTGAAGTCTTGGGCACTAACTACTAGTCGTCAGCAGCCACCATCTGGTTAATGTCATTACTTTTCCGGTTCAAAAGGGGAGTGGATGTAATGAGGAAATGTTGAATGACAGAAATATTGTGGGATGTTTTTGTTTTTGATGGTTTTGGGCAGAAATGGATAATGTTATGACCCTATTCTTTTGGTGACTGTAGTTTTCTTTTGTGAAAAATGTAGTTTGAAAATCATCTTTTGTTTCCTAAATTGAAATATCTTCGGAATGGAATGACATCTGTCTTACTAAGAACTGACGGCTGCGAATGAATGAAATGACTCTGTGGTACTGCTGTTGTTAAACCAGAAAAGAAATTTCTTTTAGACAAAAGGGGGAGTTTGTTGAAATATAGTTTGTCTAAAAGAATATCTTTGAAATTAAAAGAGAAGATATATTTAAGAGAAGATAATAAATGAATATTTGATTCTCCTATATTTAAGGAATCCCTCTATTTATCTCCAAGATATAAAATAAGTTCCTCTTCTTTAGGGATCTTATATTTTAGAAGATACAAGTTGGGTTATATATGTTCTCTGAAGAGGATTGAAACGTGTGCGAAACGAAAGAAAAAAAAAAGAGGCTTGGGTGTTGATTACGAAGACTGATCTTCCGATTGGTAATTGAAGCGGCTGCGGTTGAAAAAGAAAGGTAGTTTATATCTTCTGGAGCAACATGACTACGTAATGTAGAGTCTTGAGGATGAGTAATATACAGAATGAGACTATGGTTAGTTTGATTAATGACTTAGTCATGCATACATTTAGGGGGAGCCGGATCATTTGACGCTGTCGATGGGAGTCTTCTTTATTCCAGGGGGAGCCTAGAGTTTGATGTTAATTCACAAGTGATATAGTTATAGTATTGAGATGTATACTTAAGCTATATTGATGTTTTGATGTTTATGGTGACCATTAATAAAATTACTCATTTGAGCTGTGCGTAGCTCCCCAGACGTAGCCAGACGTAGGCAATATTGGCCGAACTGGGTCACCAAAGTCTCATGTGTTATTCTCTTCTGTTGTCTCACTAGTTATTACGTACATTATTAGCTGCAGTCGTAACTGAAGGGTCCTTGATTATCTTCACGCCGAAATATATAATTTTGAACGAAATTTTATAATCAACTAAATAGTTCATAGAAAAACGATATTTAGAATAATCACAGAAACCAGAAAAACTAAGATGATATCAACAAAGCAGTATACACGATCTTGATTGTCCAAGATGACAAGAAGAGAAACGATGTTATCGAAGATAATGAATATCAGAGCGAATGTTGTCGAAAATTATGAAAAATAAATCAGAATAGCTCGAATGATCCAGATGAAAGATATATAAAAGATGAGATGAATAACTCGGAAACGACGATCGTGAAAAAATCGGAAAGAAGAAGAAAATCAGATTTGAAAGATCGTTATAAAAGATTAAGGGTAAATA

mRNA sequence

ATGTTGGGTCGTTTGGGGTCAAGGTTCTCTAGTCTGCTACTTCACCTAAATGGAGCGGTGCTTACTGCATCTGATGCTCCTGAACATGAACCTAAGACAATTGCACTTAGCTACAGACTCTTTCAAGGCAATCATGTGCTTGATATTGACCATGATGTGCATCCAACTCGAGGCCCACAGGTTGATGCTCTCATTCGAAATTTGAAGTCTTGGGCACTAACTACTAGTCGTCAGCAGCCACCATCTGGGGGAGCCGGATCATTTGACGCTGTCGATGGGAGTCTTCTTTATTCCAGGGGGAGCCTAGAGTTTGATGTTAATTCACAAAATAGCTCGAATGATCCAGATGAAAGATATATAAAAGATGAGATGAATAACTCGGAAACGACGATCGTGAAAAAATCGGAAAGAAGAAGAAAATCAGATTTGAAAGATCGTTATAAAAGATTAAGGGTAAATA

Coding sequence (CDS)

ATGTTGGGTCGTTTGGGGTCAAGGTTCTCTAGTCTGCTACTTCACCTAAATGGAGCGGTGCTTACTGCATCTGATGCTCCTGAACATGAACCTAAGACAATTGCACTTAGCTACAGACTCTTTCAAGGCAATCATGTGCTTGATATTGACCATGATGTGCATCCAACTCGAGGCCCACAGGTTGATGCTCTCATTCGAAATTTGAAGTCTTGGGCACTAACTACTAGTCGTCAGCAGCCACCATCTGGGGGAGCCGGATCATTTGACGCTGTCGATGGGAGTCTTCTTTATTCCAGGGGGAGCCTAGAGTTTGATGTTAATTCACAAAATAGCTCGAATGATCCAGATGAAAGATATATAAAAGATGAGATGAATAACTCGGAAACGACGATCGTGAAAAAATCGGAAAGAAGAAGAAAATCAGATTTGAAAGATCGTTATAAAAGATTAAGGGTAAAT

Protein sequence

MLGRLGSRFSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGPQVDALIRNLKSWALTTSRQQPPSGGAGSFDAVDGSLLYSRGSLEFDVNSQNSSNDPDERYIKDEMNNSETTIVKKSERRRKSDLKDRYKRLRVN

Homology

[Close]

BLAST of MELO3C033266 vs. NCBI nr
Match: KAA0053200.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 4.0e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 9    FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGPQVDALIRNL 68
            FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGPQVDALIRNL
Sbjct: 1365 FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGPQVDALIRNL 1424

Query: 69   KSWALTTSRQQPPSG 84
            KSWALTTSRQQPPSG
Sbjct: 1425 KSWALTTSRQQPPSG 1439

[Close]

BLAST of MELO3C033266 vs. NCBI nr
Match: TYK00141.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 4.0e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 9    FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGPQVDALIRNL 68
            FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGPQVDALIRNL
Sbjct: 1329 FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGPQVDALIRNL 1388

Query: 69   KSWALTTSRQQPPSG 84
            KSWALTTSRQQPPSG
Sbjct: 1389 KSWALTTSRQQPPSG 1403

[Close]

BLAST of MELO3C033266 vs. NCBI nr
Match: TYK28209.1 (uncharacterized protein E5676_scaffold258G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 7.9e-23
Identity = 63/93 (67.74%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 9   FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGP--------- 68
           FSSLLLHLNG VLTASDAP  EPKTIALSYRLFQG++V DIDHDVHPTRGP         
Sbjct: 727 FSSLLLHLNGVVLTASDAPGPEPKTIALSYRLFQGSYVPDIDHDVHPTRGPRIFDTTDWN 786

Query: 69  ---------QVDALIRNLKSWALTTSRQQPPSG 84
                    QVDA IR+LKS   +TSRQQPPSG
Sbjct: 787 DFAEGFYVDQVDAFIRHLKSSTPSTSRQQPPSG 819

[Close]

BLAST of MELO3C033266 vs. NCBI nr
Match: KAA0063842.1 (uncharacterized protein E6C27_scaffold827G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 7.9e-23
Identity = 63/93 (67.74%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 9   FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGP--------- 68
           FSSLLLHLNG VLTASDAP  EPKTIALSYRLFQG++V DIDHDVHPTRGP         
Sbjct: 715 FSSLLLHLNGVVLTASDAPGPEPKTIALSYRLFQGSYVPDIDHDVHPTRGPRIFDTTDWN 774

Query: 69  ---------QVDALIRNLKSWALTTSRQQPPSG 84
                    QVDA IR+LKS   +TSRQQPPSG
Sbjct: 775 DFAEGFYVDQVDAFIRHLKSSTPSTSRQQPPSG 807

[Close]

BLAST of MELO3C033266 vs. NCBI nr
Match: KAA0041779.1 (uncharacterized protein E6C27_scaffold67G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 5.1e-22
Identity = 61/92 (66.30%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 9   FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGPQ-------- 68
           FSSLLLHLNGAVLT +DAP  EPKTIALS+RLFQG+HV DIDHDVHPTR P+        
Sbjct: 262 FSSLLLHLNGAVLTVTDAPGPEPKTIALSHRLFQGSHVPDIDHDVHPTRDPRILTLLTGM 321

Query: 69  ---------VDALIRNLKSWALTTSRQQPPSG 84
                    VDALIR+LKS A +TSRQ+PPSG
Sbjct: 322 SLLKASIWIVDALIRHLKSSAPSTSRQEPPSG 353

[Close]

BLAST of MELO3C033266 vs. ExPASy TrEMBL
Match: A0A5A7UDB5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00250 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.0e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 9    FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGPQVDALIRNL 68
            FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGPQVDALIRNL
Sbjct: 1365 FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGPQVDALIRNL 1424

Query: 69   KSWALTTSRQQPPSG 84
            KSWALTTSRQQPPSG
Sbjct: 1425 KSWALTTSRQQPPSG 1439

[Close]

BLAST of MELO3C033266 vs. ExPASy TrEMBL
Match: A0A5D3BJZ7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00280 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.0e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 9    FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGPQVDALIRNL 68
            FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGPQVDALIRNL
Sbjct: 1329 FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGPQVDALIRNL 1388

Query: 69   KSWALTTSRQQPPSG 84
            KSWALTTSRQQPPSG
Sbjct: 1389 KSWALTTSRQQPPSG 1403

[Close]

BLAST of MELO3C033266 vs. ExPASy TrEMBL
Match: A0A5A7V6D8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00690 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.8e-23
Identity = 63/93 (67.74%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 9   FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGP--------- 68
           FSSLLLHLNG VLTASDAP  EPKTIALSYRLFQG++V DIDHDVHPTRGP         
Sbjct: 715 FSSLLLHLNGVVLTASDAPGPEPKTIALSYRLFQGSYVPDIDHDVHPTRGPRIFDTTDWN 774

Query: 69  ---------QVDALIRNLKSWALTTSRQQPPSG 84
                    QVDA IR+LKS   +TSRQQPPSG
Sbjct: 775 DFAEGFYVDQVDAFIRHLKSSTPSTSRQQPPSG 807

[Close]

BLAST of MELO3C033266 vs. ExPASy TrEMBL
Match: A0A5D3DXX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00200 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.8e-23
Identity = 63/93 (67.74%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 9   FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGP--------- 68
           FSSLLLHLNG VLTASDAP  EPKTIALSYRLFQG++V DIDHDVHPTRGP         
Sbjct: 727 FSSLLLHLNGVVLTASDAPGPEPKTIALSYRLFQGSYVPDIDHDVHPTRGPRIFDTTDWN 786

Query: 69  ---------QVDALIRNLKSWALTTSRQQPPSG 84
                    QVDA IR+LKS   +TSRQQPPSG
Sbjct: 787 DFAEGFYVDQVDAFIRHLKSSTPSTSRQQPPSG 819

[Close]

BLAST of MELO3C033266 vs. ExPASy TrEMBL
Match: A0A5A7TK74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G001380 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.5e-22
Identity = 61/92 (66.30%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 9   FSSLLLHLNGAVLTASDAPEHEPKTIALSYRLFQGNHVLDIDHDVHPTRGPQ-------- 68
           FSSLLLHLNGAVLT +DAP  EPKTIALS+RLFQG+HV DIDHDVHPTR P+        
Sbjct: 262 FSSLLLHLNGAVLTVTDAPGPEPKTIALSHRLFQGSHVPDIDHDVHPTRDPRILTLLTGM 321

Query: 69  ---------VDALIRNLKSWALTTSRQQPPSG 84
                    VDALIR+LKS A +TSRQ+PPSG
Sbjct: 322 SLLKASIWIVDALIRHLKSSAPSTSRQEPPSG 353

The following BLAST results are available for this feature:

BLAST of MELO3C033266 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053200.1	4.0e-35	100.00	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK00141.1	4.0e-35	100.00	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK28209.1	7.9e-23	67.74	uncharacterized protein E5676_scaffold258G00200 [Cucumis melo var. makuwa]	[more]
KAA0063842.1	7.9e-23	67.74	uncharacterized protein E6C27_scaffold827G00690 [Cucumis melo var. makuwa]	[more]
KAA0041779.1	5.1e-22	66.30	uncharacterized protein E6C27_scaffold67G001380 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033266 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033266 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UDB5	2.0e-35	100.00	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192...	[more]
A0A5D3BJZ7	2.0e-35	100.00	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510...	[more]
A0A5A7V6D8	3.8e-23	67.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DXX2	3.8e-23	67.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TK74	2.5e-22	66.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C033266 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 133..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033266.1	MELO3C033266.1	mRNA