MELO3C033248 (gene) Melon (DHL92) v4

Overview
NameMELO3C033248
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGag protease polyprotein
Locationchr08: 13718597 .. 13723896 (+)
RNA-Seq ExpressionMELO3C033248
SyntenyMELO3C033248
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCGTATCCATAGTGTTAACAGGATAAGATACCCAACCTTAACCCTATACTATAGACCCTTTAAGCTGATCTTGAACATTGATCCCCGTATGTCTTTACATACTGTTCAAGACTCATCAAACAACTTAGGATGTTAGTTTATTGGATTTAGGTTATTAAGACAAAACTAATAATATAATAATAACACTTATTGAAATTATAAAAATAAAACACTTTATTAGTGGCAGTCAATTTGATTATATTTACTATCTACGAGTTTTAGGACATTAAACCCAACAATCCTCATATAGGCTTTCTAAGGTATTATCAACAAGATTTTTAGTAATACCTTTGTTTTCCAAGTGATCAAATAGTGGGCTTGGTATGACAAACTGATCAATAAAGTCATGTGAAATGTGCTTGTTGTCTTCTTTGATCGATTGGAATGGGAATCTTTCTTCAAAGAACAAGACATCCCTGGAGATAAAAAATTTCATATTAGTCATATCATATAACTTGTAGCCTTTTATACGTAATGGATATCCCATGAAGACACAAGGTCTTGCTCTTGGATCAAATTTGTTCCTATTGACCGTTGGTGTAGAAGCATAGGTAAGGCATCCAAATGTCTTTATGAACCCATAGTCAACAGTTTTGTTAAACAGAACAGTATATGGGGTGTTGTTGGAGAGTAAAACCAGTGGTGCTTTGTTGATTAAGTATGCTGCAGTCAGCACATTCTCCCCAAAAAGTGAGAGGAACATTAGATTGAAACATTATGGCTCTTACCACGTTGAGGAGGTGTTGGTGTTTTCTTGTAACCACTGAATTCTATTGATGAGTGTATGCACAGGAAAACTGATGAGTAGTTTTTGTTTTGGCAAAGAATTCTCTGAAGTTCAACTCAGATGCATTATCAGAATGAATATTTTTTATTTTCTTTGAAAATTGAGTCTCAACAAGTTTGAAGAAATTGGGAATAACTTGTAAAATGTCACTTTTATTTTTCAAAAGATGTATCCATGTGTACCTTGATTTATCATCAACAATGGTGGCAAAGTAGGTATGACCTGCATGTGTTTAGGTTTTAAAGAGACCCCATATATCACAGTACACTAGGTCAAAAATATTCTCAACAACATTATTTAAGGCAGGAAATGAAAGACGCTTCTGTTTAGCTAAGGGACAAATATGACACACTTGTTTACAATTTGAGAAATCAGAAATCTCTATTAGTTTTGACAATTCTTTTATTCTACTAATAGAGAGGTATCCCATATGGTTATGCCATGTAGTTGTAGAAGCTTTACACAAAAGGACAGTAGATTCAATAGAGTAGTCTTTATTCTTTTCATCATTTACTTTCAGTAAATATAAGTCACTGATTAGCTCAACCCTCCAAATCGTTTTTGAAACTGACTTGTCCTAAATCATACAGTTGGTGTTAGTGAAGGATATAGAATATCTTCCATCCTTAAGTAGGGCACTTACTAATAGCAGTTTGTATTTCAACTCAGGAATGTATAAAACATCCTTCAATATAAGTTATTTTGCTATTAGAATGTCACCTACATACTCAACCTTCAAACGAACTTTAGTTGGCAGTATAACTGACATATTTTGAATGTTGTGTAGTTGTTCAAACATAGATTTATCATGGCATATGTGGGAGGAGGCTCCAGAATCTATGATCCAACAAGAATTTATGAGTGAATTAGAAAGACATGTACCTGCTATGTGAGTAGTTTCTTTGTTAGAGATCTCATCAATTTGTTGAAAGTTCAAGTGTGTCTGCATCATATTCAAAAGCTGTGAGTATTGGTCATTATTAAGACTGGCGAAGAAGGTTGACTGATTGCCTTTTGCAATTTTTGATGGCATTTCATTGCTGGTTTGCATAGAATTCTTCGACCTTTGTAGATGGACTAAATTATTATTTGCTAGTCTATGTCCTGGTGGATAACCATGTAACCTATAATATTTATCAACAATATGACCTCTATATCCACAGTTGGTGCACACTGGCTGGGTATCTTTCTTCTTGAATTTCTCAACTGTAAACTTTTTCTCAATGTTAGCCATCAGACTTATATTCTCAATTGTAGATATAGATCCAATAGATCTCTGCATTTCTTCTTGAATGATAAGAGAGAATACCTTGTTTATTTCTGGTAGAGGGTCAATCAATAGAATTTGTTGATTTGTGCATATGACTCATTCAATCCCATAAGGAATGTCATTACAAATTTTGCATTGAAGAATTCTATCATCTTCTTTGATCCTTGACAAGTGCATTCATCCATTGGTCTGTATTCAACAAGTTCCTGCCATATGTAGTGATTTTTGCGTAATATACTTCAATTGGAAGATTTCCTTGGGTAGTAGTCACGAGATCTTTTCTCAACTGGTATATATGTGGCCCATTAGATTGACGGTACCTCTCTTTTAATTCGTCCCATATCTCTTTGACGCTCCCGCTGTAAACTAAGCTGGCAGTAATGTCTTTTGAGATTGAATGATAATCCATGAGGCAATTATGTCATTATTACATCTCCATGCTGATAGTAAGCTTCCTTCTGATGGTTTATCAATTGTTCCAGTAATGAAACCAATCTTATTTTTCCCTGATAATGCAAGTTTCATTGCTCTGCTCTATGAGGAGTAGTTACTTGATCCTGCAAGTGGTGTAGATACCAGATTGGTGGTTGGGATGATTGAGTGATGAAGAGTGAAAGGGTTCATTTGGGCGTCAAGTTCCAAAGATGTGATCGGATTTGAGTTGGGAACTGAATTGGAATTGCCGGCTGTTGAACTCTTTGGTGTCGTCAGGATAAGACTGCACGAGGGTAATGGCGTTCGTGTGGGATTTTTAACTTTCTCTCTTGCGGAAATGCTCTGATACCATAACAAATAGAGAAAAAAGATATATGGAAAGTTTTTCTTATTACTTTCACTTATTGTATTTACACATTTCAAGTTCCTTTTATAGAAGAACTTGTTAGTTTATTTAACTAATTCACAGCTGAAAAATACAAGCAGATTCAAATAAAATGTAACTGATATATTGTTGTAACTGTTTAATGTTGTTGTGACTGTTTAATTGTTTTACTGTTGATAAAGTTTGACCAAATTCAAATGTTCATTGGGTGATTTTTGATGAAGAAAGCAGGGCAACTGATTTTCACGCGATTTTAGGAGGCCTCTGATTTTTCTTGTTTTGCTGAGAGTACCGGTGGAGTTAGGATCTCTATTTGATATGGTTGGAAATCTTATTTAATTTACTACAACTTTCATGAAGAAATCATGAACAAAAAATGATTAAAAATAAGTTAAATTGTAGGGTGAAGTTAAAGGGGTTATGTGCGAGCGATTATTGAAGTTGTTCTATTTCGAGGGTTATTTGGGTTTATTCACAGGGAATCAGATTTATATGTCTTGAGGTAAGTTTTAGAGGACCTCAAATTGAATATTTTGATATAAAGAAATCTCATTGTGGTTAAGTATTGGAAGAGTTATGATCATTTGAATGTCGTGTTGCGAATGTGGAAAATTTTGAGAAATATGTTGAGTATGGTTTATTGTTTTAAAGATGGACTTCTATAGCATTATCTTTAGTGAGCCATGTTAAAAATAAAATTTGAAGATCGTAATATTTAGGTTTCTAATACTCGATTCTGGTTGTTTGAGAGGTCAAGAGGAAATAGGTCGGATTTACACATTGGGAAACTAGTCCAAGACTGAGTGACCAAAACCAATTTTTAAAAATATTTTCTTTCTCCTAAATATTAACTATGGTTGATTGATCTACATGTTTATTTACAAAGTATTGAAACTCATTTGAAGTCCATGATTATTTTCAAAGTATGAGTTTCGAGACTAGAATTCTTACTGAATGTTTATGCTAGCACATGATTATTGAAAGTCTGGAAATTATTTGAACCACTGTGTTTCAAACAAAGTATGAGTTACCAAGTTTTGTTTTAAGAACTACAGCTTTTCACGAATAATCTAAGTAAGTTTAAGCTTTACGAAAGAAAAAGATAGCAAGCATGTTTTAATGTTTTCATACGATTTCTCTGATGTTCCTATTAACTACATGACTGAGGTGTTGAGTCCGAGGCTATATGGTACCGTGTGTACACAGGTTAGATTCCATTGTTGACGTTAAGTGTACTCCGTAACAACGACGCTCTCGTGAGTGCTGAGCAGGTCCCACTACGACAAAAACGAAGGAAGTGTTAGGCGGACCCCACTACATAGTAGAGCTTGTAAACGTTGTTGTACTGGGTGTACCCTACACAACGTAGATTTGTCATGTTAGTTAAAATATTTTGATATACTTGATAGGCCTTGCTAGATTTCAATGACGTATATACTGAGTATTTTAGGAAGCTATTCTTACTATTATACGTCTATGTTCATGACTTGTATAAACAGATTTATAAGTGTAAGCTTTCACGTGCTCTTACTTTTAAATTTCTAGTTTTAAACTGAGTCACTCACTGAGCTTTATAACTTACCATTCCAAAATGTTTTACACACTTTCCAGGTAGAGATCGAGTTCCCGATGCCTGATAGACTGCCTTCGTTTGCTGAAGCTACGTTATCGATTGCCAGTACGTGTTTCGAGTTGGGCATAGAGTCTGTTGTGTTATGATGTATATACACCCTTGTATGTTATAAATACTCCACAGTTTGTGTAAGCTTTAGGAGCTGCGGTTGTGTAAACCTTTGTTGGTTATATTTTGGTTAAGGTGTCTCTAGGTTTACTTGTGAAATTAGTTACTTTCGAGATACATTTCATGCATGTATATGACTAGTCTAGGATTCGTTGCATTGTGTGCATGTATATTAGTTTATATACTAGATTGACAAGTTCATCATATTAAAGTTTTAAGCAGAGTTGATAGATACAGGTAAAGAAAAGTGTTGTCCGTCGGCTTCACGCCATCTTTCGGTCTAAGCTAGCAGGTAGTCCGGGAGGGGGTGCGACAAATACAATACAATAAGGGGGTCATTTTCATTCCTTTCATCTTTCATTCGTTGAATTAGCTCTGGGTTTTGACAACTATACGAAATAATATCCTAGTGATAGGGAATCCAATTCTCCACAGAGGGAACCCTCTGCCAATGGAGTCTTCCTCTTAGTAGCCCTTCCGAAAACATATTCAATTCCAGTACTAACAATGATTTTACGCTGGAGCGAAGGGAAAATTACATTTGGAGGAGTAAAAAGTTGCCACAACCTAGGGTGGGGTTTGCTTTTTATTTTACAAACTTACTAAAGGGGGAGAGCACCATGACAGATAACGTCTAG

mRNA sequence

ATGAGTCGTATCCATAGTGTTAACAGGATAAGATACCCAACCTTAACCCTATACTATAGACCCTTTAAGCTGATCTTGAACATTGATCCCCATGTGATCGGATTTGAGTTGGGAACTGAATTGGAATTGCCGGCTGTTGAACTCTTTGGTGTCGTCAGGATAAGACTGCACGAGGGTAATGGCGTTCGTGGTGAAGTTAAAGGGGTTATGTGCGAGCGATTATTGAAGTTGTTCTATTTCGAGGATAGCAAGCATGTTTTAATGTTTTCATACGATTTCTCTGATGTTCCTATTAACTACATGACTGAGGTGTTGAGTCCGAGGCTATATGGTACCGTGTGTACACAGGTAGAGATCGAGTTCCCGATGCCTGATAGACTGCCTTCGTTTGCTGAAGCTACGTTATCGATTGCCAAGTTGATAGATACAGGTAAAGAAAAGTGTTGTCCGTCGGCTTCACGCCATCTTTCGGGAATCCAATTCTCCACAGAGGGAACCCTCTGCCAATGGAGTCTTCCTCTTAGTAGCCCTTCCGAAAACATATTCAATTCCAGTACTAACAATGATTTTACGCTGGAGCGAAGGGAAAATTACATTTGGAGGAGTAAAAAGTTGCCACAACCTAGGGTGGGGTTTGCTTTTTATTTTACAAACTTACTAAAGGGGGAGAGCACCATGACAGATAACGTCTAG

Coding sequence (CDS)

ATGAGTCGTATCCATAGTGTTAACAGGATAAGATACCCAACCTTAACCCTATACTATAGACCCTTTAAGCTGATCTTGAACATTGATCCCCATGTGATCGGATTTGAGTTGGGAACTGAATTGGAATTGCCGGCTGTTGAACTCTTTGGTGTCGTCAGGATAAGACTGCACGAGGGTAATGGCGTTCGTGGTGAAGTTAAAGGGGTTATGTGCGAGCGATTATTGAAGTTGTTCTATTTCGAGGATAGCAAGCATGTTTTAATGTTTTCATACGATTTCTCTGATGTTCCTATTAACTACATGACTGAGGTGTTGAGTCCGAGGCTATATGGTACCGTGTGTACACAGGTAGAGATCGAGTTCCCGATGCCTGATAGACTGCCTTCGTTTGCTGAAGCTACGTTATCGATTGCCAAGTTGATAGATACAGGTAAAGAAAAGTGTTGTCCGTCGGCTTCACGCCATCTTTCGGGAATCCAATTCTCCACAGAGGGAACCCTCTGCCAATGGAGTCTTCCTCTTAGTAGCCCTTCCGAAAACATATTCAATTCCAGTACTAACAATGATTTTACGCTGGAGCGAAGGGAAAATTACATTTGGAGGAGTAAAAAGTTGCCACAACCTAGGGTGGGGTTTGCTTTTTATTTTACAAACTTACTAAAGGGGGAGAGCACCATGACAGATAACGTCTAG

Protein sequence

MSRIHSVNRIRYPTLTLYYRPFKLILNIDPHVIGFELGTELELPAVELFGVVRIRLHEGNGVRGEVKGVMCERLLKLFYFEDSKHVLMFSYDFSDVPINYMTEVLSPRLYGTVCTQVEIEFPMPDRLPSFAEATLSIAKLIDTGKEKCCPSASRHLSGIQFSTEGTLCQWSLPLSSPSENIFNSSTNNDFTLERRENYIWRSKKLPQPRVGFAFYFTNLLKGESTMTDNV
Homology
[Close]
BLAST of MELO3C033248 vs. NCBI nr
Match: TYK11693.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-05
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 0 

Query: 88  MFSYDFSDVPINYMTEVLSPRLYGTVCTQ-----------------VEIEFPMPDRLPSF 137
           MFS DF+++ I+Y+TE+LS RLYGTVCTQ                 VEIE P+PD LP+ 
Sbjct: 1   MFSCDFAELSIDYVTEILSLRLYGTVCTQVIFLLSTLSVLHDNDAVVEIELPVPDTLPTS 60

[Close]
BLAST of MELO3C033248 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 3.3e-04
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 101 MTEVLSPRLYGTVCTQVEIEFPMPDRLPSFAEATLS 137
           MTE+LS RLYGTVCTQV+IE PMPD LP+ AE++ S
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSES 36

[Close]
BLAST of MELO3C033248 vs. NCBI nr
Match: KAA0032980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21988.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 7.2e-04
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 101 MTEVLSPRLYGTVCTQVEIEFPMPDRLPSFAEATLSIA 139
           MTE+LS RL  TVCTQVEI+F +PDRL  FAEA +SIA
Sbjct: 1   MTEILSLRLEDTVCTQVEIKFSVPDRLSEFAEAPISIA 38

[Close]
BLAST of MELO3C033248 vs. ExPASy TrEMBL
Match: A0A5D3CIF4 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00010 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 0 

Query: 88  MFSYDFSDVPINYMTEVLSPRLYGTVCTQ-----------------VEIEFPMPDRLPSF 137
           MFS DF+++ I+Y+TE+LS RLYGTVCTQ                 VEIE P+PD LP+ 
Sbjct: 1   MFSCDFAELSIDYVTEILSLRLYGTVCTQVIFLLSTLSVLHDNDAVVEIELPVPDTLPTS 60

[Close]
BLAST of MELO3C033248 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-04
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 101 MTEVLSPRLYGTVCTQVEIEFPMPDRLPSFAEATLS 137
           MTE+LS RLYGTVCTQV+IE PMPD LP+ AE++ S
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSES 36

[Close]
BLAST of MELO3C033248 vs. ExPASy TrEMBL
Match: A0A5A7SPZ6 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00180 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-04
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 101 MTEVLSPRLYGTVCTQVEIEFPMPDRLPSFAEATLSIA 139
           MTE+LS RL  TVCTQVEI+F +PDRL  FAEA +SIA
Sbjct: 1   MTEILSLRLEDTVCTQVEIKFSVPDRLSEFAEAPISIA 38

The following BLAST results are available for this feature:
BLAST of MELO3C033248 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11693.13.8e-0548.48gag protease polyprotein [Cucumis melo var. makuwa][more]
KAA0062407.13.3e-0472.22uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK... [more]
KAA0032980.17.2e-0471.05DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21988.1 D... [more]
BLAST of MELO3C033248 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033248 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CIF41.9e-0548.48Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7V6381.6e-0472.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SPZ63.5e-0471.05DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of MELO3C033248 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033248.1MELO3C033248.1mRNA