MELO3C033247 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033247
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Reverse transcriptase
Location	chr11: 15951840 .. 15953246 (-)
RNA-Seq Expression	MELO3C033247
Synteny	MELO3C033247

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCAGAGTCGACAGATACAGGTACAGAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGATCTAAGGTAGCAGGTAGTCTGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTTGCTCCATGGGAATTAAGGTAGAGCGGTTAGCTCTAAGAAGAAACTGGAAAGTAAATAATTGAACGTCAAGTTAGCTTAAAGGGAACTAGTGGAGTATGGTCTAGGTAAGGGTAGAAGTGAGTCCAATTATTATTAATACGTGAGTAGACATTTAGTATCATGCATTTGAGTTAAGTATTTATAGTATGTCTAATGTGTTGACATATTATAGGAGTCGTGCCACCACGTACTGGTAGACGACGCCGGCAGAATCAGGACGGGATGCAAGGTCCTACCCAAGGTCCATCTGTAGGGGAATCTAGTACCCTAGGAGTTCGAGGTGGTGCAGGAAACGAGCAGTTTGCGAGAACAACACAGGAAATAGGAAGGCCAGATAGAGCAGAGCCTAGTGATCCAGAAAAGGCATACAGAATTGAACGGCTGAAGAAGTTAGGGGCTACAGTGTTTGAAGGTTCCACAGATCCAGCTGATGCAGAGAACTGGTTGAATATGCTTGAAAAGTGTTTTGATGTGATGAATTTTCCTGAGGAGCGAAAGGTTAGATTGGCCACATTTTTGTTGCAAAAATAGGCTGAAGGATGGTGGAAATCTATATTAGCAAGACGCAGTGATGCACGTGCTTTAGACTGGCAGACTTTTAGAGGCATATTCGAAGATAAGTATTATCCCAGCACATACTGCGAAGCCAAGAGGGATGAATTTCTGGGGTTGAAACAAGGATCACTTTCAGTGGCTGAGTATGAGAGGAAGTATACCGAGCTTTCACGGTATGCTGACGTTATTATAGCTTTTGAGAGTGACAGGTGCCGAAGGTTTGAAAGAGGGTTGCGTTTTGAAATACGTACCCCAGTTACAGCCATTGCTAAGTGGACGAATTTCTCTCAGTTAGTGGAGACTGCCCTTCGTGTGGAGCAGAGTATAACAGAAGAGAAATCGGCAGTGGAGCTTAGTCGTGGGACTTCAACAGCTAGTGGATTTAGAGGCCGTGAGCAGCGGAGGTTCATGCCTGGGATAAATATTTCAAGCCGTCAAGATTTTAAGAATCGCTCTGGAGGCCAAGCATCGAGGAACGTGAGTTATGGTAGTGTTTTTCGGAGACAGAGCCAGAGAATACCTAGTCAACCCATTAGATCAACAGTAAGATCGCAACCAGGTCAGGAGTCCATTGCTAGTACCGTCAGGCGAATACCATGCACGAGTTGTGGCAGGAACCATCGAGGTCAGTGTTTGGTAGGTTCCGGTGTACCAGTGCGAACAGCCAGGACATTTCAAGAAAGATTGTCCGTAG

mRNA sequence

AAGCAGAGTCGACAGATACAGGTACAGAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGATCTAAGGTAGCAGGTAGTCTGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTTGCTCCATGGGAATTAAGGTAGAGCGGTTAGCTCTAAGAAGAAACTGGAAAGAGTCGTGCCACCACGTACTGGTAGACGACGCCGGCAGAATCAGGACGGGATGCAAGGTCCTACCCAAGTTAGTGGAGACTGCCCTTCGTGTGGAGCAGAGTATAACAGAAGAGAAATCGGCAGTGGAGCTTAGTCGTGGGACTTCAACAGCTAGTGGATTTAGAGGCCGTGAGCAGCGGAGGTTCATGCCTGGGATAAATATTTCAAGCCGTCAAGATTTTAAGAATCGCTCTGGAGGCCAAGCATCGAGGAACGTGAGTTATGGTAGTGTTTTTCGGAGACAGAGCCAGAGAATACCTAGTCAACCCATTAGATCAACAGTAAGATCGCAACCAGGTCAGGAGTCCATTGCTAGTACCGTCAGGCGAATACCATGCACGAGTTGTGGCAGGAACCATCGAGGTCAGTGTTTGGTAGGTTCCGGTGTACCAGTGCGAACAGCCAGGACATTTCAAGAAAGATTGTCCGTAG

Coding sequence (CDS)

ATGGGAATTAAGGTAGAGCGGTTAGCTCTAAGAAGAAACTGGAAAGAGTCGTGCCACCACGTACTGGTAGACGACGCCGGCAGAATCAGGACGGGATGCAAGGTCCTACCCAAGTTAGTGGAGACTGCCCTTCGTGTGGAGCAGAGTATAACAGAAGAGAAATCGGCAGTGGAGCTTAGTCGTGGGACTTCAACAGCTAGTGGATTTAGAGGCCGTGAGCAGCGGAGGTTCATGCCTGGGATAAATATTTCAAGCCGTCAAGATTTTAAGAATCGCTCTGGAGGCCAAGCATCGAGGAACGTGAGTTATGGTAGTGTTTTTCGGAGACAGAGCCAGAGAATACCTAGTCAACCCATTAGATCAACAGTAAGATCGCAACCAGGTCAGGAGTCCATTGCTAGTACCGTCAGGCGAATACCATGCACGAGTTGTGGCAGGAACCATCGAGGTCAGTGTTTGGTAGGTTCCGGTGTACCAGTGCGAACAGCCAGGACATTTCAAGAAAGATTGTCCGTA

Protein sequence

MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPKLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSGVPVRTARTFQERLSV

Homology

[Close]

BLAST of MELO3C033247 vs. NCBI nr
Match: TYK02171.1 (uncharacterized protein E5676_scaffold388G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 257.3 bits (656), Expect = 9.4e-65
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 38  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQA 97
           +LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQA
Sbjct: 223 QLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQA 282

Query: 98  SRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSG 157
           SRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSG
Sbjct: 283 SRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSG 342

Query: 158 VPVRTARTFQERLSV 173
           VPVRTARTFQERLSV
Sbjct: 343 VPVRTARTFQERLSV 357

[Close]

BLAST of MELO3C033247 vs. NCBI nr
Match: KAA0037766.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-58
Identity = 142/264 (53.79%), Postives = 145/264 (54.92%), Query Frame = 0


Query: 1   MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK---------------------- 60
           MGIKVERLALRRNWKESCHHVLVDD GRIRTGCKVLPK                      
Sbjct: 1   MGIKVERLALRRNWKESCHHVLVDDVGRIRTGCKVLPKEAEGWWKSILARRSDARALDWQ 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  TFRGIFQDKYYPSTYCEAKRDAFLGLKQGSLSVAEYERKYTEFSRYADVIVASESDRCRR 120

Query: 121 ------------------------LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQ 159
                                   LVETALRVEQSITEEKS VELSRGTST SGFRGREQ
Sbjct: 121 FVRGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKSTVELSRGTSTVSGFRGREQ 180

[Close]

BLAST of MELO3C033247 vs. NCBI nr
Match: KAA0062248.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 3.8e-58
Identity = 150/301 (49.83%), Postives = 152/301 (50.50%), Query Frame = 0


Query: 1   MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK---------------------- 60
           MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK                      
Sbjct: 1   MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPKEIGRPDRAEPSDPEKAYGIERL 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  KLGATVFEGSTDPADAENWLNMLEKCFDMMNCPEERKTFRGIFEDKYYPSTYYEAKRDEF 120

Query: 121 ------------------------------------------------------------ 159
                                                                       
Sbjct: 121 LGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLHFEIRTPITAIAKWTNFS 180

[Close]

BLAST of MELO3C033247 vs. NCBI nr
Match: KAA0050492.1 (uncharacterized protein E6C27_scaffold175G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 225.7 bits (574), Expect = 3.0e-55
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 38  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQA 97
           +LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRF PGINISSRQDFKNRSGGQA
Sbjct: 261 QLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQA 320

Query: 98  SRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSG 157
           SRNVSYGSVF+RQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVG+G
Sbjct: 321 SRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGAG 380

Query: 158 V 159
           V
Sbjct: 381 V 381

[Close]

BLAST of MELO3C033247 vs. NCBI nr
Match: KAA0066849.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 225.7 bits (574), Expect = 3.0e-55
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 38  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQA 97
           +LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRF PGINISSRQDFKNRSGGQA
Sbjct: 261 QLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQA 320

Query: 98  SRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSG 157
           SRNVSYGSVF+RQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVG+G
Sbjct: 321 SRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGAG 380

Query: 158 V 159
           V
Sbjct: 381 V 381

[Close]

BLAST of MELO3C033247 vs. ExPASy TrEMBL
Match: A0A5D3BR01 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00680 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.5e-65
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 38  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQA 97
           +LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQA
Sbjct: 223 QLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQA 282

Query: 98  SRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSG 157
           SRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSG
Sbjct: 283 SRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSG 342

Query: 158 VPVRTARTFQERLSV 173
           VPVRTARTFQERLSV
Sbjct: 343 VPVRTARTFQERLSV 357

[Close]

BLAST of MELO3C033247 vs. ExPASy TrEMBL
Match: A0A5A7T6G9 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3085G00110 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 6.4e-59
Identity = 142/264 (53.79%), Postives = 145/264 (54.92%), Query Frame = 0


Query: 1   MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK---------------------- 60
           MGIKVERLALRRNWKESCHHVLVDD GRIRTGCKVLPK                      
Sbjct: 1   MGIKVERLALRRNWKESCHHVLVDDVGRIRTGCKVLPKEAEGWWKSILARRSDARALDWQ 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  TFRGIFQDKYYPSTYCEAKRDAFLGLKQGSLSVAEYERKYTEFSRYADVIVASESDRCRR 120

Query: 121 ------------------------LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQ 159
                                   LVETALRVEQSITEEKS VELSRGTST SGFRGREQ
Sbjct: 121 FVRGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKSTVELSRGTSTVSGFRGREQ 180

[Close]

BLAST of MELO3C033247 vs. ExPASy TrEMBL
Match: A0A5A7V3R5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00110 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.8e-58
Identity = 150/301 (49.83%), Postives = 152/301 (50.50%), Query Frame = 0


Query: 1   MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK---------------------- 60
           MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK                      
Sbjct: 1   MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPKEIGRPDRAEPSDPEKAYGIERL 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  KLGATVFEGSTDPADAENWLNMLEKCFDMMNCPEERKTFRGIFEDKYYPSTYYEAKRDEF 120

Query: 121 ------------------------------------------------------------ 159
                                                                       
Sbjct: 121 LGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLHFEIRTPITAIAKWTNFS 180

[Close]

BLAST of MELO3C033247 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.5e-55
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 38  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQA 97
           +LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRF PGINISSRQDFKNRSGGQA
Sbjct: 223 QLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQA 282

Query: 98  SRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSG 157
           SRNVSYGSVF+RQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVG+G
Sbjct: 283 SRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGAG 342

Query: 158 V 159
           V
Sbjct: 343 V 343

[Close]

BLAST of MELO3C033247 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.5e-55
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 38  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQA 97
           +LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRF PGINISSRQDFKNRSGGQA
Sbjct: 261 QLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQA 320

Query: 98  SRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSG 157
           SRNVSYGSVF+RQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVG+G
Sbjct: 321 SRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGAG 380

Query: 158 V 159
           V
Sbjct: 381 V 381

The following BLAST results are available for this feature:

BLAST of MELO3C033247 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C033247 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02171.1	9.4e-65	99.26	uncharacterized protein E5676_scaffold388G00680 [Cucumis melo var. makuwa]	[more]
KAA0037766.1	1.3e-58	53.79	putative polyprotein [Cucumis melo var. makuwa]	[more]
KAA0062248.1	3.8e-58	49.83	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0050492.1	3.0e-55	96.69	uncharacterized protein E6C27_scaffold175G001240 [Cucumis melo var. makuwa]	[more]
KAA0066849.1	3.0e-55	96.69	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BR01	4.5e-65	99.26	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7T6G9	6.4e-59	53.79	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold308...	[more]
A0A5A7V3R5	1.8e-58	49.83	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7U2V7	1.5e-55	96.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	1.5e-55	96.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]

BLAST of MELO3C033247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033247.1	MELO3C033247.1	mRNA