MELO3C033241.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C033241.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr08: 13041955 .. 13043238 (+)
RNA-Seq ExpressionMELO3C033241.jh1
SyntenyMELO3C033241.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTATGATATTTCCATTGACTACATGACTGAGATCTTGAGCCTAAGGCTAGAGGATACCGTGTGCACACAGGTTACGTTTTGTTGTTGACGTTGAGTGTACTCCTTGATAACGATGCTGTCGTGAGTGCTAGGTGAGTCCCACTATGTCAAAGATGATGGGAGTGCTGGACGGACCCCACTACATCGTAGAACTAGTAAACGTTGGTTGTACTTGGCGTGCCTTACACAACGTAATGAAGCCATGTTAGTTAAATAGTTTATAAACAGGAAATGTCTTGCTAGATTTTATAGATATACGTATTGAATGTTGAATGAGCTGTTTTCTGAAAATATTTACAGTTAACGCTTTGCTTGTTAGACTTATAAGTTTTCAATGATTATCATGAGTTATGAATTATAGTTTTAAAGTATTTTCACTCACTAGGCTTTATAGCTTACCTTTCCAAAATGTTTTACCCACTTTCCAGGTAGAGATCGAGTTCCCGGTGCCTGATAGACTGCCGGAGTCTGCTGAAGCTCCGATATCGATTGCCAGTACGTGGTTATAGTTGTGCATAGAGTCTATTGTGTTATGATGTATATATTTGTATATGATATAGATACTTTACAGTTTGTATAAGCTTTATGAGTTGCGTTTGTGTAAACCTTTGTTGGTTATGTTTTGGTTAAGGTGTCTTCAGGTTTACTTGCGGAATCAGTTATTTCCGGGCTACACTTTATGTATGTATATGATTAGTCTAGGTTCCACCGTGTTGTGTTGCATGTATAATTATTTATATACTAGATTAGCAAGTTTATCACGTTAATGAATTCAGCAGAGTCAACAGATATCGGTAGAGAAAAGCGTTGTCGGTCGGCTTCATGCCATCTTTCGATCTTAGTTAGTATGTGGTCCGAGAGGGGGTGTGATAGGTTTGGCCAGAATAACGAACCTGTACATCAGGTGGGGAGTGAGAGTGGGATGTCGAGTTGATGTACTAGGATGGGCTTGCTTGGATAATGCTTGCACCTCGTTGTGGCCATAGTCTAGCATGCTGTCTTTGGCGATGCAAGATATCTTGCGATTGCTTCGTGCTTGGTGGATGGGTTTCATTGGAGTACCACGTCTAACCGTCAGACGGGGAGAGAGAGCGGGATGTTGAGTTGGTCCTACTTGGATTTGCTTGCTTGGATAATGCTTGCACCTTGTTGTGGGTATATTCTCGACGTGCTTGTCCATGATGATACACGATGCCTTGCGATTGCTTCTTGCTTGGTGGAAGGGTTTGGTCGAAATTGA

mRNA sequence

ATGATTTATGATATTTCCATTGACTACATGACTGAGATCTTGAGCCTAAGGCTAGAGGATACCGTGTGCACACAGGTAGAGATCGAGTTCCCGGTGCCTGATAGACTGCCGGAGTCTGCTGAAGCTCCGATATCGATTGCCAGTTTACTTGCGGAATCAGTTATTTCCGGGCTACACTTTATGTATGTATATGATTAGTCTAGGTTCCACCGTGTTGTGTTGCATGTATAATTATTTATATACTAGATTAGCAAGTTTATCACGTTAATGAATTCAGCAGAGTCAACAGATATCGGTAGAGAAAAGCGTTGTCGGTCGGCTTCATGCCATCTTTCGATCTTAGTTAGTATGTGGTCCGAGAGGGGGTGTGATAGGTTTGGCCAGAATAACGAACCTGTACATCAGCATGCTGTCTTTGGCGATGCAAGATATCTTGCGATTGCTTCGTGCTTGGTGGATGGGTTTCATTGGAGTACCACGTCTAACCGTCAGACGGGGAGAGAGAGCGGGATGTTGAGTTGGTCCTACTTGGATTTGCTTGCTTGGATAATGCTTGCACCTTGTTGTGGGTATATTCTCGACGTGCTTGTCCATGATGATACACGATGCCTTGCGATTGCTTCTTGCTTGGTGGAAGGGTTTGGTCGAAATTGA

Coding sequence (CDS)

ATGAATTCAGCAGAGTCAACAGATATCGGTAGAGAAAAGCGTTGTCGGTCGGCTTCATGCCATCTTTCGATCTTAGTTAGTATGTGGTCCGAGAGGGGGTGTGATAGGTTTGGCCAGAATAACGAACCTGTACATCAGCATGCTGTCTTTGGCGATGCAAGATATCTTGCGATTGCTTCGTGCTTGGTGGATGGGTTTCATTGGAGTACCACGTCTAACCGTCAGACGGGGAGAGAGAGCGGGATGTTGAGTTGGTCCTACTTGGATTTGCTTGCTTGGATAATGCTTGCACCTTGTTGTGGGTATATTCTCGACGTGCTTGTCCATGATGATACACGATGCCTTGCGATTGCTTCTTGCTTGGTGGAAGGGTTTGGTCGAAATTGA

Protein sequence

MNSAESTDIGREKRCRSASCHLSILVSMWSERGCDRFGQNNEPVHQHAVFGDARYLAIASCLVDGFHWSTTSNRQTGRESGMLSWSYLDLLAWIMLAPCCGYILDVLVHDDTRCLAIASCLVEGFGRN
Homology
[Close]
BLAST of MELO3C033241.jh1 vs. NCBI nr
Match: KAA0025774.1 (hypothetical protein E6C27_scaffold34G00210 [Cucumis melo var. makuwa] >TYK09680.1 hypothetical protein E5676_scaffold447G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (454), Expect = 5.19e-53
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 47  HAVFGDARYLAIASCLVDGFHWSTTSNRQTGRESGMLSWSYLDLLAWIMLAPCCGYILDV 106
           HAVFGDARYLAIASCLVDGFHWSTTSNRQTGRESGMLSWSYLDLLAWIMLAPCCGYILDV
Sbjct: 234 HAVFGDARYLAIASCLVDGFHWSTTSNRQTGRESGMLSWSYLDLLAWIMLAPCCGYILDV 293

Query: 107 LVHDDTRCLAIASCLVEGFGRN 128
           LVHDDTRCLAIASCLVEGFGRN
Sbjct: 294 LVHDDTRCLAIASCLVEGFGRN 315

[Close]
BLAST of MELO3C033241.jh1 vs. NCBI nr
Match: WP_148654918.1 (hypothetical protein [Legionella pneumophila])

HSP 1 Score: 65.9 bits (159), Expect = 3.67e-11
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 88  LDLLAWIMLAPCCGYILDVLVHDDTRCLAIASCLVEGFGRN 128
           LD LAW+MLA CCG  L  LV +DTRCL+IASCLVEGFGRN
Sbjct: 9   LDGLAWMMLALCCGRRLGSLVLEDTRCLSIASCLVEGFGRN 49

[Close]
BLAST of MELO3C033241.jh1 vs. NCBI nr
Match: WP_148654917.1 (hypothetical protein [Legionella pneumophila])

HSP 1 Score: 57.0 bits (136), Expect = 7.31e-08
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 94  IMLAPCCGYILDVLVHDDTRCLAIASCLVEGFGRN 128
           +MLA CCG  L +LV +DTRCL+IASCLVEGFGRN
Sbjct: 1   MMLALCCGCRLGLLVLEDTRCLSIASCLVEGFGRN 35

[Close]
BLAST of MELO3C033241.jh1 vs. NCBI nr
Match: KAE8649391.1 (hypothetical protein Csa_011827 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 2.78e-06
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 88  LDLLAWIMLAPCCGYILDVLVHDDTRCLAIASCLVEGFGRN 128
           LD LAW+MLA CCG    +L  +DTRCL I SCL+EGF  N
Sbjct: 34  LDGLAWMMLAFCCGRRSGLLFLEDTRCLVITSCLMEGFDLN 74

[Close]
BLAST of MELO3C033241.jh1 vs. NCBI nr
Match: KAE8637134.1 (hypothetical protein CSA_015441 [Cucumis sativus] >KAE8652005.1 hypothetical protein Csa_021690 [Cucumis sativus])

HSP 1 Score: 48.5 bits (114), Expect = 3.39e-04
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 0 

Query: 88  LDLLAWIMLAPCCGYI---LDVLVHDDTRCLAIASCLVEGFGRN 128
           +D+L W  L   C  +     + V +DTRCL+IASCLVEGFGRN
Sbjct: 34  VDVLGWACLDDACTLLWASFGLAVLEDTRCLSIASCLVEGFGRN 77

[Close]
BLAST of MELO3C033241.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SJC7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00850 PE=4 SV=1)

HSP 1 Score: 179 bits (454), Expect = 2.52e-53
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 47  HAVFGDARYLAIASCLVDGFHWSTTSNRQTGRESGMLSWSYLDLLAWIMLAPCCGYILDV 106
           HAVFGDARYLAIASCLVDGFHWSTTSNRQTGRESGMLSWSYLDLLAWIMLAPCCGYILDV
Sbjct: 234 HAVFGDARYLAIASCLVDGFHWSTTSNRQTGRESGMLSWSYLDLLAWIMLAPCCGYILDV 293

Query: 107 LVHDDTRCLAIASCLVEGFGRN 128
           LVHDDTRCLAIASCLVEGFGRN
Sbjct: 294 LVHDDTRCLAIASCLVEGFGRN 315

The following BLAST results are available for this feature:
BLAST of MELO3C033241.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0025774.15.19e-53100.00hypothetical protein E6C27_scaffold34G00210 [Cucumis melo var. makuwa] >TYK09680... [more]
WP_148654918.13.67e-1175.61hypothetical protein [Legionella pneumophila][more]
WP_148654917.17.31e-0874.29hypothetical protein [Legionella pneumophila][more]
KAE8649391.12.78e-0660.98hypothetical protein Csa_011827 [Cucumis sativus][more]
KAE8637134.13.39e-0452.27hypothetical protein CSA_015441 [Cucumis sativus] >KAE8652005.1 hypothetical pro... [more]
BLAST of MELO3C033241.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033241.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SJC72.52e-53100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C033241.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033241.jh1.t1MELO3C033241.jh1.t1mRNA