MELO3C033216 (gene) Melon (DHL92) v4

Overview
NameMELO3C033216
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3
Locationchr08: 10451914 .. 10452378 (-)
RNA-Seq ExpressionMELO3C033216
SyntenyMELO3C033216
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGATGGAACAATTAAGTGTCAAAAGACTTTAGAAAGATTAGAGGAGCATGACCCTAGTTATTTGTCAAAGGATGATATTTCTATTGCTGAAGATTGGGATAATGCAAAAGTGTTTGTAAAGTTCCTAAAGACTTTTTCAGAGGTAACAATGAAGTTTTCTGCATCTATGTCTGTGACTTCAAACATATTTTTTCACGAACTTTGTTTGATCCAAAAAATAATTCGTGAATACTCATCGTATGAGAATGCATTATTGAATTAGATGAAATTACGCATGCATGCAAAATTCAACAAGTATTGGGGTATAACTACAAGTGAGAAGACCAATTTATTATTGTATGTTTCTGTAGTTCTTGACCCTAGGTATAAGCTAGCTTATGTGAATTATTGTTTTAATTAATTTTTGGAGGAAGATTGTGTAAAGATATGGATGAATAAAGTTGAAGAAGCATTTCGTTGA

mRNA sequence

ATGTTGGATGGAACAATTAAGTGTCAAAAGACTTTAGAAAGATTAGAGGAGCATGACCCTAGTTATTTGTCAAAGGATGATATTTCTATTGCTGAAGATTGGGATAATGCAAAAGTGTTTGTAAAGTTCCTAAAGACTTTTTCAGAGGAAGATTGTGTAAAGATATGGATGAATAAAGTTGAAGAAGCATTTCGTTGA

Coding sequence (CDS)

ATGTTGGATGGAACAATTAAGTGTCAAAAGACTTTAGAAAGATTAGAGGAGCATGACCCTAGTTATTTGTCAAAGGATGATATTTCTATTGCTGAAGATTGGGATAATGCAAAAGTGTTTGTAAAGTTCCTAAAGACTTTTTCAGAGGAAGATTGTGTAAAGATATGGATGAATAAAGTTGAAGAAGCATTTCGTTGA

Protein sequence

MLDGTIKCQKTLERLEEHDPSYLSKDDISIAEDWDNAKVFVKFLKTFSEEDCVKIWMNKVEEAFR
Homology
BLAST of MELO3C033216 vs. NCBI nr
Match: XP_016903394.1 (PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 52/65 (80.00%), Postives = 53/65 (81.54%), Query Frame = 0

Query: 1  MLDGTIKCQKTLERLEEHDPSYLSKDDISIAEDWDNAKVFVKFLKTFSEEDCVKIWMNKV 60
          MLDG IKC+   ERLEEHDPSYL KDDI   EDWDNAKV  KFLKTFSEEDC KIW NKV
Sbjct: 13 MLDGAIKCKNFFERLEEHDPSYLPKDDIPTTEDWDNAKVVGKFLKTFSEEDCAKIWTNKV 72

Query: 61 EEAFR 66
          EEAFR
Sbjct: 73 EEAFR 77

BLAST of MELO3C033216 vs. NCBI nr
Match: KAA0062757.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa] >TYK08831.1 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0

Query: 1  MLDGTIKCQKTLERLEEHDPSYLSKDDISIAEDWDNAKVFVKFLKTFSE 50
          MLDGTIKCQKTLERLEEHDPSYLSKDDI IAEDWDNAKVFVKFLKTFSE
Sbjct: 1  MLDGTIKCQKTLERLEEHDPSYLSKDDIPIAEDWDNAKVFVKFLKTFSE 49

BLAST of MELO3C033216 vs. NCBI nr
Match: KAA0026183.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 45/56 (80.36%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MLDGTIKCQKTLERLEEHDPSYLSKDDISIAEDWDNAKVFVKFLKTFSEEDCVKIW 57
           MLDG IKCQKT ERLEEHDPSYL KDDI   EDWDNAKVFVKFLKTFSE    K W
Sbjct: 374 MLDGAIKCQKTFERLEEHDPSYLPKDDIPTTEDWDNAKVFVKFLKTFSETKFNKYW 429

BLAST of MELO3C033216 vs. NCBI nr
Match: TYK09610.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 45/56 (80.36%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MLDGTIKCQKTLERLEEHDPSYLSKDDISIAEDWDNAKVFVKFLKTFSEEDCVKIW 57
           MLDG IKCQKT ERLEEHDPSYL KDDI   EDWDNAKVFVKFLKTFSE    K W
Sbjct: 156 MLDGAIKCQKTFERLEEHDPSYLPKDDIPTTEDWDNAKVFVKFLKTFSETKFNKYW 211

BLAST of MELO3C033216 vs. NCBI nr
Match: TYK06161.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 45/56 (80.36%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MLDGTIKCQKTLERLEEHDPSYLSKDDISIAEDWDNAKVFVKFLKTFSEEDCVKIW 57
           MLDG IKCQKT ERLEEHDPSYL KDDI   EDWDNAKVFVKFLKTFSE    K W
Sbjct: 346 MLDGAIKCQKTFERLEEHDPSYLPKDDIPTTEDWDNAKVFVKFLKTFSETKFNKYW 401

BLAST of MELO3C033216 vs. ExPASy TrEMBL
Match: A0A1S4E592 (zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo OX=3656 GN=LOC107992164 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.8e-22
Identity = 52/65 (80.00%), Postives = 53/65 (81.54%), Query Frame = 0

Query: 1  MLDGTIKCQKTLERLEEHDPSYLSKDDISIAEDWDNAKVFVKFLKTFSEEDCVKIWMNKV 60
          MLDG IKC+   ERLEEHDPSYL KDDI   EDWDNAKV  KFLKTFSEEDC KIW NKV
Sbjct: 13 MLDGAIKCKNFFERLEEHDPSYLPKDDIPTTEDWDNAKVVGKFLKTFSEEDCAKIWTNKV 72

Query: 61 EEAFR 66
          EEAFR
Sbjct: 73 EEAFR 77

BLAST of MELO3C033216 vs. ExPASy TrEMBL
Match: A0A5A7V6W1 (Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00140 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.2e-19
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0

Query: 1  MLDGTIKCQKTLERLEEHDPSYLSKDDISIAEDWDNAKVFVKFLKTFSE 50
          MLDGTIKCQKTLERLEEHDPSYLSKDDI IAEDWDNAKVFVKFLKTFSE
Sbjct: 1  MLDGTIKCQKTLERLEEHDPSYLSKDDIPIAEDWDNAKVFVKFLKTFSE 49

BLAST of MELO3C033216 vs. ExPASy TrEMBL
Match: A0A5A7U1Q3 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00550 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-17
Identity = 45/56 (80.36%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MLDGTIKCQKTLERLEEHDPSYLSKDDISIAEDWDNAKVFVKFLKTFSEEDCVKIW 57
           MLDG IKCQKT ERLEEHDPSYL KDDI   EDWDNAKVFVKFLKTFSE    K W
Sbjct: 156 MLDGAIKCQKTFERLEEHDPSYLPKDDIPTTEDWDNAKVFVKFLKTFSETKFNKYW 211

BLAST of MELO3C033216 vs. ExPASy TrEMBL
Match: A0A5D3C2L4 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00130 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-17
Identity = 45/56 (80.36%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MLDGTIKCQKTLERLEEHDPSYLSKDDISIAEDWDNAKVFVKFLKTFSEEDCVKIW 57
           MLDG IKCQKT ERLEEHDPSYL KDDI   EDWDNAKVFVKFLKTFSE    K W
Sbjct: 346 MLDGAIKCQKTFERLEEHDPSYLPKDDIPTTEDWDNAKVFVKFLKTFSETKFNKYW 401

BLAST of MELO3C033216 vs. ExPASy TrEMBL
Match: A0A5D3CE46 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold458G00440 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-17
Identity = 45/56 (80.36%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MLDGTIKCQKTLERLEEHDPSYLSKDDISIAEDWDNAKVFVKFLKTFSEEDCVKIW 57
           MLDG IKCQKT ERLEEHDPSYL KDDI   EDWDNAKVFVKFLKTFSE    K W
Sbjct: 156 MLDGAIKCQKTFERLEEHDPSYLPKDDIPTTEDWDNAKVFVKFLKTFSETKFNKYW 211

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016903394.11.4e-2180.00PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis... [more]
KAA0062757.11.9e-1897.96zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 [Cucumis... [more]
KAA0026183.11.0e-1680.36putative transposase [Cucumis melo var. makuwa][more]
TYK09610.11.0e-1680.36putative transposase [Cucumis melo var. makuwa][more]
TYK06161.11.0e-1680.36putative transposase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S4E5926.8e-2280.00zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo OX=... [more]
A0A5A7V6W19.2e-1997.96Zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X3 OS=Cucum... [more]
A0A5A7U1Q35.1e-1780.36Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180... [more]
A0A5D3C2L45.1e-1780.36Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287... [more]
A0A5D3CE465.1e-1780.36Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold458... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 65..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033216.1MELO3C033216.1mRNA