MELO3C033212 (gene) Melon (DHL92) v4

Overview
NameMELO3C033212
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr08: 33223862 .. 33224069 (-)
RNA-Seq ExpressionMELO3C033212
SyntenyMELO3C033212
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGAGAAAGCTATGAGCCAGGAGGACGCGATGACGGCGTAGGTGATTGAGCTTATGGAGGCCATCCCGAACCTTACTATGGCGGAGAAGAGTAAGTGTGTCATGATAGTGAATCAGAAGGTGTCGCTCATGAGAAGCTTCATCAAGATGCCCGATTCGATGAAGGCCGCTTATTGTAGGGTCCTTCTTGGCGGTGACCCATGA

mRNA sequence

ATGGCCGGAGAAAGCTATGAGCCAGGAGGACGCGATGACGGCGTAGGTGATTGAGCTTATGGAGGCCATCCCGAACCTTACTATGGCGGAGAAGAGTAAGTGTGTCATGATAGTGAATCAGAAGGTGTCGCTCATGAGAAGCTTCATCAAGATGCCCGATTCGATGAAGGCCGCTTATTGTAGGGTCCTTCTTGGCGGTGACCCATGA

Coding sequence (CDS)

ATGGAGGCCATCCCGAACCTTACTATGGCGGAGAAGAGTAAGTGTGTCATGATAGTGAATCAGAAGGTGTCGCTCATGAGAAGCTTCATCAAGATGCCCGATTCGATGAAGGCCGCTTATTGTAGGGTCCTTCTTGGCGGTGACCCATGA

Protein sequence

MEAIPNLTMAEKSKCVMIVNQKVSLMRSFIKMPDSMKAAYCRVLLGGDP
Homology
BLAST of MELO3C033212 vs. NCBI nr
Match: KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 4.3e-15
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0

Query: 1   MEAIPNLTMAEKSKCVMIVNQKVSLMRSFIKMPDSMKAAYCRVLLGGDP 50
           ++AI NLTMAEKSKCVM+VNQKVSLMRSFIKMPD MKAAYCRVLLGGDP
Sbjct: 144 IKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGDP 192

BLAST of MELO3C033212 vs. NCBI nr
Match: KAA0055070.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 6.2e-14
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0

Query: 1   MEAIPNLTMAEKSKCVMIVNQKVSLMRSFIKMPDSMKAAYCRVLLGGD 49
           ME IPNLTMAEKSKC+MI+NQKVSLMRSFIKM DSM AAYC+VLLGGD
Sbjct: 158 MEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGD 205

BLAST of MELO3C033212 vs. NCBI nr
Match: TYK19822.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 8.2e-14
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 0

Query: 1   MEAIPNLTMAEKSKCVMIVNQKVSLMRSFIKMPDSMKAAYCRVLLGGDP 50
           +E IPNLTMAEKSKC+++VNQKVSLMRSFIKM DSMK AYCR+L GGDP
Sbjct: 94  IEVIPNLTMAEKSKCIVLVNQKVSLMRSFIKMSDSMKVAYCRILHGGDP 142

BLAST of MELO3C033212 vs. NCBI nr
Match: KAA0033551.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0

Query: 1   MEAIPNLTMAEKSKCVMIVNQKVSLMRSFIKMPDSMKAAYCRVLLGGD 49
           +EAIPNLTMAEKSKCVM+VNQKVSLMRSFIKMPDSMKA Y R+LLGG+
Sbjct: 165 IEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGN 212

BLAST of MELO3C033212 vs. NCBI nr
Match: KAA0035634.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30908.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 4.1e-13
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 0

Query: 1   MEAIPNLTMAEKSKCVMIVNQKVSLMRSFIKMPDSMKAAYCRVLLGGDP 50
           MEAIPNLTMAEKS CVMIVN+K+SLMRSFIKM DS KA YCRVLL GDP
Sbjct: 85  MEAIPNLTMAEKSMCVMIVNEKMSLMRSFIKMFDSRKAFYCRVLLSGDP 133

BLAST of MELO3C033212 vs. ExPASy TrEMBL
Match: A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-15
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0

Query: 1   MEAIPNLTMAEKSKCVMIVNQKVSLMRSFIKMPDSMKAAYCRVLLGGDP 50
           ++AI NLTMAEKSKCVM+VNQKVSLMRSFIKMPD MKAAYCRVLLGGDP
Sbjct: 144 IKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYCRVLLGGDP 192

BLAST of MELO3C033212 vs. ExPASy TrEMBL
Match: A0A5D3DLC6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002060 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-14
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0

Query: 1   MEAIPNLTMAEKSKCVMIVNQKVSLMRSFIKMPDSMKAAYCRVLLGGD 49
           ME IPNLTMAEKSKC+MI+NQKVSLMRSFIKM DSM AAYC+VLLGGD
Sbjct: 158 MEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLLGGD 205

BLAST of MELO3C033212 vs. ExPASy TrEMBL
Match: A0A5D3D8E2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00210 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.0e-14
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 0

Query: 1   MEAIPNLTMAEKSKCVMIVNQKVSLMRSFIKMPDSMKAAYCRVLLGGDP 50
           +E IPNLTMAEKSKC+++VNQKVSLMRSFIKM DSMK AYCR+L GGDP
Sbjct: 94  IEVIPNLTMAEKSKCIVLVNQKVSLMRSFIKMSDSMKVAYCRILHGGDP 142

BLAST of MELO3C033212 vs. ExPASy TrEMBL
Match: A0A5D3B9T0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00610 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.7e-14
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0

Query: 1   MEAIPNLTMAEKSKCVMIVNQKVSLMRSFIKMPDSMKAAYCRVLLGGD 49
           +EAIPNLTMAEKSKCVM+VNQKVSLMRSFIKMPDSMKA Y R+LLGG+
Sbjct: 165 IEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGN 212

BLAST of MELO3C033212 vs. ExPASy TrEMBL
Match: A0A5A7SWD7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001170 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 0

Query: 1   MEAIPNLTMAEKSKCVMIVNQKVSLMRSFIKMPDSMKAAYCRVLLGGDP 50
           MEAIPNLTMAEKS CVMIVN+K+SLMRSFIKM DS KA YCRVLL GDP
Sbjct: 85  MEAIPNLTMAEKSMCVMIVNEKMSLMRSFIKMFDSRKAFYCRVLLSGDP 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0048148.14.3e-1589.80retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p... [more]
KAA0055070.16.2e-1487.50retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon p... [more]
TYK19822.18.2e-1481.63retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0033551.11.4e-1387.50retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon p... [more]
KAA0035634.14.1e-1385.71retrotransposon protein [Cucumis melo var. makuwa] >TYK30908.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TYU42.1e-1589.80Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DLC63.0e-1487.50Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D8E24.0e-1481.63Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3B9T06.7e-1487.50Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SWD72.0e-1385.71Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033212.1MELO3C033212.1mRNA