MELO3C033199 (gene) Melon (DHL92) v4

Overview
NameMELO3C033199
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr08: 31947251 .. 31947589 (+)
RNA-Seq ExpressionMELO3C033199
SyntenyMELO3C033199
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACATTGTCGCGTGCCCCGAAGCATGTATGGACAAAGGAGGAGGAGGACACTTTTGTAGAGTGTTTAGTGGATTTGGTGTCCATGGAAGGATGGAAATCGAATAGTGGTACGTTCCGACCAGGTTACTTAGCCCAACTGGTACGCATGATGACCAAAAAATTACCTGGATGTCGAGTCCGGGCAACCACTGCAATCGATTGCAGAATAAAGACACTTAAGCGGACATTCCAGGCCATCGTAGAAATGCGAGGGCCAGCGTGTAGTGGGTTCGACTGTAACGATGATGCAAAATGCATAATTACGGAGAAGGAACTCTTCGATAACTGGGTAAGG

mRNA sequence

ATGACAACATTGTCGCGTGCCCCGAAGCATGTATGGACAAAGGAGGAGGAGGACACTTTTGTAGAGTGTTTAGTGGATTTGGTGTCCATGGAAGGATGGAAATCGAATAGTGGTACGTTCCGACCAGGTTACTTAGCCCAACTGGTACGCATGATGACCAAAAAATTACCTGGATGTCGAGTCCGGGCAACCACTGCAATCGATTGCAGAATAAAGACACTTAAGCGGACATTCCAGGCCATCGTAGAAATGCGAGGGCCAGCGTGTAGTGGGTTCGACTGTAACGATGATGCAAAATGCATAATTACGGAGAAGGAACTCTTCGATAACTGGGTAAGG

Coding sequence (CDS)

ATGACAACATTGTCGCGTGCCCCGAAGCATGTATGGACAAAGGAGGAGGAGGACACTTTTGTAGAGTGTTTAGTGGATTTGGTGTCCATGGAAGGATGGAAATCGAATAGTGGTACGTTCCGACCAGGTTACTTAGCCCAACTGGTACGCATGATGACCAAAAAATTACCTGGATGTCGAGTCCGGGCAACCACTGCAATCGATTGCAGAATAAAGACACTTAAGCGGACATTCCAGGCCATCGTAGAAATGCGAGGGCCAGCGTGTAGTGGGTTCGACTGTAACGATGATGCAAAATGCATAATTACGGAGAAGGAACTCTTCGATAACTGGGTAAGG

Protein sequence

MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDNWVR
Homology
[Close]
BLAST of MELO3C033199 vs. NCBI nr
Match: KAA0045060.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96267.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 2.3e-59
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCR 60
           MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCR
Sbjct: 1   MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCR 60

Query: 61  VRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDNW 112
           VRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDNW
Sbjct: 61  VRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDNW 111

[Close]
BLAST of MELO3C033199 vs. NCBI nr
Match: KAA0065929.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 1.4e-48
Identity = 92/113 (81.42%), Postives = 102/113 (90.27%), Query Frame = 0 

Query: 1   MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCR 60
           M+T +RAP+HVWTKEEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM +KLPGC+
Sbjct: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDNWVR 114
           VRATT IDCRIKTLKRTFQAI EMRGPACSGF  ND+ KCII EKELFDNWVR
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVR 113

[Close]
BLAST of MELO3C033199 vs. NCBI nr
Match: KAA0041588.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 1.8e-48
Identity = 91/113 (80.53%), Postives = 103/113 (91.15%), Query Frame = 0 

Query: 1   MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCR 60
           M+T +RAP+HVWT+EEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM +KLPGC+
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDNWVR 114
           VRATT IDCRIKTLKRTFQAIVEMRGPACSGF  ND+ KCI+ EKELFDNWVR
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 113

[Close]
BLAST of MELO3C033199 vs. NCBI nr
Match: KAA0064022.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 1.8e-48
Identity = 91/113 (80.53%), Postives = 102/113 (90.27%), Query Frame = 0 

Query: 1   MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCR 60
           M+T +RAP+HVWT+EEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM KKLPGC+
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60

Query: 61  VRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDNWVR 114
           VRATT IDCRIKTLKRTFQAI EMRGPACSGF  ND+ KCI+ EKELFDNWVR
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 113

[Close]
BLAST of MELO3C033199 vs. NCBI nr
Match: KAA0038975.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-48
Identity = 90/113 (79.65%), Postives = 102/113 (90.27%), Query Frame = 0 

Query: 1   MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCR 60
           M+T +RAP+HVWT+EEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM +KLPGC+
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDNWVR 114
           VRATT IDCRIKTLKRTFQAI EMRGPACSGF  ND+ KCI+ EKELFDNWVR
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 113

[Close]
BLAST of MELO3C033199 vs. ExPASy TrEMBL
Match: A0A5A7TPF3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00590 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.1e-59
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCR 60
           MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCR
Sbjct: 1   MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCR 60

Query: 61  VRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDNW 112
           VRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDNW
Sbjct: 61  VRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDNW 111

[Close]
BLAST of MELO3C033199 vs. ExPASy TrEMBL
Match: A0A5A7VKT2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G001150 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.7e-49
Identity = 92/113 (81.42%), Postives = 102/113 (90.27%), Query Frame = 0 

Query: 1   MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCR 60
           M+T +RAP+HVWTKEEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM +KLPGC+
Sbjct: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDNWVR 114
           VRATT IDCRIKTLKRTFQAI EMRGPACSGF  ND+ KCII EKELFDNWVR
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVR 113

[Close]
BLAST of MELO3C033199 vs. ExPASy TrEMBL
Match: A0A5A7V6Q9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00200 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.7e-49
Identity = 91/113 (80.53%), Postives = 102/113 (90.27%), Query Frame = 0 

Query: 1   MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCR 60
           M+T +RAP+HVWT+EEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM KKLPGC+
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60

Query: 61  VRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDNWVR 114
           VRATT IDCRIKTLKRTFQAI EMRGPACSGF  ND+ KCI+ EKELFDNWVR
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 113

[Close]
BLAST of MELO3C033199 vs. ExPASy TrEMBL
Match: A0A5A7TFA4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00550 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.7e-49
Identity = 91/113 (80.53%), Postives = 103/113 (91.15%), Query Frame = 0 

Query: 1   MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCR 60
           M+T +RAP+HVWT+EEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM +KLPGC+
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDNWVR 114
           VRATT IDCRIKTLKRTFQAIVEMRGPACSGF  ND+ KCI+ EKELFDNWVR
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 113

[Close]
BLAST of MELO3C033199 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.5e-48
Identity = 90/113 (79.65%), Postives = 102/113 (90.27%), Query Frame = 0 

Query: 1   MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCR 60
           M+T +RAP+HVWT+EEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM +KLPGC+
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDNWVR 114
           VRATT IDCRIKTLKRTFQAI EMRGPACSGF  ND+ KCI+ EKELFDNWVR
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVR 113

The following BLAST results are available for this feature:
BLAST of MELO3C033199 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045060.12.3e-59100.00retrotransposon protein [Cucumis melo var. makuwa] >TYJ96267.1 retrotransposon p... [more]
KAA0065929.11.4e-4881.42retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0041588.11.8e-4880.53retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0064022.11.8e-4880.53retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0038975.15.2e-4879.65retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C033199 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033199 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TPF31.1e-59100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VKT26.7e-4981.42Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7V6Q98.7e-4980.53Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TFA48.7e-4980.53Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CWL22.5e-4879.65Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C033199 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024752Myb/SANT-like domainPFAMPF12776Myb_DNA-bind_3coord: 12..109
e-value: 3.2E-5
score: 24.8
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 5..112
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 5..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033199.1MELO3C033199.1mRNA