MELO3C033194.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C033194.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCACTA en-spm transposon protein
Locationchr08: 9696217 .. 9698329 (+)
RNA-Seq ExpressionMELO3C033194.jh1
SyntenyMELO3C033194.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGGATTGATTTGAAAGAGAAGGGTACGTTTTTATTTGTTTGGTTGTAGAGAAAGAACAGTGCAGAGAGAAATTAGGCAGAGGGAAGAAATGTGGGGCTTTGCTTATATACCAAAATGGAAGGAAGAATTTATATAGAAATGTATGTAAAGATGAAATGAAGGAATGAATTTTATGGCAATTTGAACAACAAAAATGTTGTCTTTTTTCCTCAATTCTTGGTTGTCCTAACTTCCTCTTTTTTTTTTTTTTTCCGATAATCATTCTTTCATGAATCACTTCCATGTGAAATTTTTTGTTTGTTTGTTTCTAATAATCACTCTACTCTGCAATTATGGAAAAGAAAAAAACACATAAAATTTACAACTTTGTTGTCTTTTTACCTTTAATAATCATTTGCAGAATTACTTTACATTTTCAAAACAAAATCAGCACTTGAAACAATCAAAAGAAGATGTAAAATAGTGTGACAAACCACCCAAATTTCTATTCTAATTTTTTCTTTTCTTTTTTCATTTTTGAAAATTCATAATGCCTTGATAGTAACTTAGAATAGAGAAAAAATTCAACCATTATATCTCATTCTTAATTAAGGTACCTTGAAATAAATAAATAGAAGTTGGATGCCAGAGTTTAGAATTAGTTTTTGATTTGTTTTGATTTGATTTCTAGATTTCAAAATGCTACTCTATATCTTTAACTAAATTTCAAGAGGTCACATTTTTACTCTTAGATTTGAAATTGGTTTTTATTTGGTATATAAGTTTCAATATTTACCTGTTTACCCTTAATTTCTTATGTTAATGTTTAATTTAGTATTTATTGTTAACTTTCACTCAATTAATTTAAAATGGTCTTGAAGTTGAAATTTTTAATTAATTTTAAGTGAAAAAAATGGCAAAGAAATAAGGCCTGTAGGACGACGAGTGCGAGCAGTTCCTTGACATCTTTTCCGTAGTTCACACAAAAAGAGATTGAATTACAAACTAAACTTAATGAAGCTTTGGAACGGATTGAAGTGCAAGATAGAAATTAACAAGCATTAGCTTCACTAGTGGAACAAATGCAAAAGTTGATAGAAGACTTCACTCGTGCACAACAGGGACCACCACATGATCCTTAGCTCTGCGGTACGTATATATGTCTCTATTATTCTTAAGTTTTTGCAATGATAGTATACAGTGAACATATAGATATATGTACTAAACTTAGTTACTTTTATATCATTGTAGGACCGAAGGTGTAGAATGACGCGTACGCGCCTCGTTGGGAGACTTTTTGTTATGTTTCTGTTTTTTTGTATTATGAGAACTACATTTTTTTTGTATTAGACTAACTAATATTTTTTAAACTTATTCGTGTTATTAATTTTAATTTTTTAAATTTGTGTTTGTACTTCTTAATTTATTAATTTATATTGAATTTGTTTTAATTTAATCGAAAACGTCGAGAAAAAAATTTGAGCAATCCGAATGTCGTTGTGAATGTTTGAGCAAAATATTTTAGGGAAAAAATTAGAAATTATATATTTTAAAAAAATATATAAAAAGGAATTTCCAACACAATGAAACATCAGGACTAGGATGCATCGACACGTCGGGGAAGGGTTTCCTGACGCATAAAAGACGTCAGGAAAAAAATGTCGAAAGAGGCATTCCCGACGCCGTGTCATGCATCGGCATAAGGTCCGTCGAGAGAGGAACTACCGACGCCACTTTGGCCAACGCATGTCACGGCGTTGGGAGAGGCATTCCCGATGCTCCCGATACCATGTTGGTACGGTGTCGGAAATGCCTCTCCCGACTCATTTCTCCCGACGTTATTTCTGACGCCATGAAAAACGTCAGCATATCTTTTTCCGACGTTTCTTTCACTTTTTCCGACGTTTTTGTGCGTCGGGAGTACCCCCGTCTCTTGTAGTGTCTGACGATTGATCGACTACTGAATTATAATACCCTGTCCAAATGCCAACATCGTCATCATTGGACTAATGTAGCCAGTCTGTTTGTGTCATGGGAGGCACTTCATCCACATGTTGGTCAACTTCTTCCAATTCATCAGGCTCTTGCACTCGAGTATGTCACCTTTGAATTGGTGCAAATGCAATAG

mRNA sequence

ATGGAAGGGATTGATTTGAAAGAGAAGGGTACGTTTTTATTTGTTTGGTTGTAGAGAAAGAACAGTGCAGAGAGAAATTAGGCAGAGGGAAGAAATGTGGGGCTTTGCTTATATACCAAAATGGAAGGAAGAATTTATATAGAAATAATTACTTTACATTTTCAAAACAAAATCAGCACTTGAAACAATCAAAAGAAGATGACCGAAGGTGTAGAATGACGCGTACGCGCCTCGTTGGGAGACTTTTTGTTATGAATTTCCAACACAATGAAACATCAGGACTAGGATGCATCGACACGTCGGGGAAGGGTTTCCTGACGCATAAAAGACGTCAGGAAAAAAATGTCGAAAGAGGCATTCCCGACGCCGTGTCATGCATCGGCATAAGGTCCGTCGAGAGAGGAACTACCGACGCCACTTTGGCCAACGCATGTCACGGCGTTGGGAGAGGCATTCCCGATGCTCCCGATACCATGTTGGTACGGTGTCGGAAATGCCTCTCCCGACTCATTTCTCCCGACGTTATTTCTGACGCCATGAAAAACGTCAGCATATCTTTTTCCGACGTTTCTTTCACTTTTTCCGACGTTTTTGTGCGTCGGGAGTACCCCCCCAGTCTGTTTGTGTCATGGGAGGCACTTCATCCACATGTTGGTCAACTTCTTCCAATTCATCAGGCTCTTGCACTCGAGTATGTCACCTTTGAATTGGTGCAAATGCAATAG

Coding sequence (CDS)

ATGACGCGTACGCGCCTCGTTGGGAGACTTTTTGTTATGAATTTCCAACACAATGAAACATCAGGACTAGGATGCATCGACACGTCGGGGAAGGGTTTCCTGACGCATAAAAGACGTCAGGAAAAAAATGTCGAAAGAGGCATTCCCGACGCCGTGTCATGCATCGGCATAAGGTCCGTCGAGAGAGGAACTACCGACGCCACTTTGGCCAACGCATGTCACGGCGTTGGGAGAGGCATTCCCGATGCTCCCGATACCATGTTGGTACGGTGTCGGAAATGCCTCTCCCGACTCATTTCTCCCGACGTTATTTCTGACGCCATGAAAAACGTCAGCATATCTTTTTCCGACGTTTCTTTCACTTTTTCCGACGTTTTTGTGCGTCGGGAGTACCCCCCCAGTCTGTTTGTGTCATGGGAGGCACTTCATCCACATGTTGGTCAACTTCTTCCAATTCATCAGGCTCTTGCACTCGAGTATGTCACCTTTGAATTGGTGCAAATGCAATAG

Protein sequence

MTRTRLVGRLFVMNFQHNETSGLGCIDTSGKGFLTHKRRQEKNVERGIPDAVSCIGIRSVERGTTDATLANACHGVGRGIPDAPDTMLVRCRKCLSRLISPDVISDAMKNVSISFSDVSFTFSDVFVRREYPPSLFVSWEALHPHVGQLLPIHQALALEYVTFELVQMQ
Homology
[Close]
BLAST of MELO3C033194.jh1 vs. NCBI nr
Match: TYK01082.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 3.43e-13
Identity = 50/116 (43.10%), Postives = 66/116 (56.90%), Query Frame = 0 

Query: 42  KNVERGIPDAVSCIGIRSVERGTTDATLANACHGVGRGIPDAPDTMLVRCRKCLSRLISP 101
           K +  GIPDA++ +GIR V  G TD   + +   VGRGIP+A   MLV     +S+ +S 
Sbjct: 82  KTLGEGIPDAIASVGIRDVGEGITDTMKSVSIRDVGRGIPNA---MLVMHGGFISQRVSF 141

Query: 102 DVISDAMKNVSISFSDVSFTFSDVFVRREYPPSLFVSWEALHPHVGQLLPIHQALA 157
           DV  DA+K+V   + DV   F DVFVRRE P S  V+  +L  H  Q L  +  LA
Sbjct: 142 DVCLDAVKDVGKRYPDVFLGFFDVFVRRESPLSCSVTRTSL-THAMQSLGTNSTLA 193

[Close]
BLAST of MELO3C033194.jh1 vs. NCBI nr
Match: KAA0036659.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.92e-11
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 0 

Query: 42  KNVERGIPDAVSCIGIRSVERGTTDATLANACHGVGRGIPDAPDTMLVRCRKCLSRLISP 101
           K +  GIPDA++ +GIR V  G T+   + +   VGRGIP+A   MLV     +S+ +S 
Sbjct: 82  KTLGEGIPDAIASVGIRDVGEGITETMKSVSIRDVGRGIPNA---MLVMHGGFISQRVSF 141

Query: 102 DVISDAMKNVSISFSDVSFTFSDVFVRREYPPSLFVSWEALHPHVGQLLPIHQALA 157
           DV  DA+K+V   + DV     DVFVRRE P S  V+  +L  H  Q L  +  LA
Sbjct: 142 DVYLDAVKDVGKRYPDVFLGSFDVFVRRESPLSCSVTRTSL-THAMQSLGTNSTLA 193

[Close]
BLAST of MELO3C033194.jh1 vs. NCBI nr
Match: TYK14413.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 1.33e-10
Identity = 43/83 (51.81%), Postives = 50/83 (60.24%), Query Frame = 0 

Query: 50  DAVSCIGIRSVERGTTDATLANACHGVGRGIPDAPDTMLVRCRKCLSRLISPDVISDAMK 109
           D  +  GIR   R   DA+      GVG+G PDA    LVR R+ LSR ISPDV+ D + 
Sbjct: 113 DLQTASGIRFSRRRHADAS-----PGVGKGFPDAD---LVRRRESLSRRISPDVLPDVVL 172

Query: 110 NVSISFSDVSFTFSDVFVRREYP 132
            V ISF DV   F+DVFVRREYP
Sbjct: 173 FVGISFPDVLCIFADVFVRREYP 187

[Close]
BLAST of MELO3C033194.jh1 vs. NCBI nr
Match: KAA0049602.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK15960.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 6.79e-08
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 43  NVERGIPDAVSCIGIRSVERGTTDATLANACHGVGRGIPDAPDTMLVRCRKCLSRLIS 100
           NV  GI DA  C GIRS+   ++DAT+A+AC+G+GR   D  D +LVR R+CLSR  S
Sbjct: 271 NVGSGITDAACCFGIRSIGNASSDATMADACYGIGR---DISDVVLVRRRECLSRRFS 325

[Close]
BLAST of MELO3C033194.jh1 vs. NCBI nr
Match: KAA0056276.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK05223.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 9.96e-07
Identity = 39/83 (46.99%), Postives = 45/83 (54.22%), Query Frame = 0 

Query: 40  QEKNVERGIPDAVSCIGIRSVERGTTDATLANACHGVGRGIPDAPDTMLVRCRKCLSRLI 99
           + K   RG+PD    +    V RG  D         V RGIPDA   +LV  ++CLSRL 
Sbjct: 482 KSKAFRRGLPDVGDFVSKNGVGRGILD---------VERGIPDA---VLVTHQECLSRLT 541

Query: 100 SPDVISDAMKNVSISFSDVSFTF 122
           SPDV  DA KNV ISF DV F F
Sbjct: 542 SPDVRPDAPKNVGISFPDVFFYF 552

[Close]
BLAST of MELO3C033194.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BQN2 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G001040 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.66e-13
Identity = 50/116 (43.10%), Postives = 66/116 (56.90%), Query Frame = 0 

Query: 42  KNVERGIPDAVSCIGIRSVERGTTDATLANACHGVGRGIPDAPDTMLVRCRKCLSRLISP 101
           K +  GIPDA++ +GIR V  G TD   + +   VGRGIP+A   MLV     +S+ +S 
Sbjct: 82  KTLGEGIPDAIASVGIRDVGEGITDTMKSVSIRDVGRGIPNA---MLVMHGGFISQRVSF 141

Query: 102 DVISDAMKNVSISFSDVSFTFSDVFVRREYPPSLFVSWEALHPHVGQLLPIHQALA 157
           DV  DA+K+V   + DV   F DVFVRRE P S  V+  +L  H  Q L  +  LA
Sbjct: 142 DVCLDAVKDVGKRYPDVFLGFFDVFVRRESPLSCSVTRTSL-THAMQSLGTNSTLA 193

[Close]
BLAST of MELO3C033194.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T5M8 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4533G00110 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.31e-12
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 0 

Query: 42  KNVERGIPDAVSCIGIRSVERGTTDATLANACHGVGRGIPDAPDTMLVRCRKCLSRLISP 101
           K +  GIPDA++ +GIR V  G T+   + +   VGRGIP+A   MLV     +S+ +S 
Sbjct: 82  KTLGEGIPDAIASVGIRDVGEGITETMKSVSIRDVGRGIPNA---MLVMHGGFISQRVSF 141

Query: 102 DVISDAMKNVSISFSDVSFTFSDVFVRREYPPSLFVSWEALHPHVGQLLPIHQALA 157
           DV  DA+K+V   + DV     DVFVRRE P S  V+  +L  H  Q L  +  LA
Sbjct: 142 DVYLDAVKDVGKRYPDVFLGSFDVFVRRESPLSCSVTRTSL-THAMQSLGTNSTLA 193

[Close]
BLAST of MELO3C033194.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CRC0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00660 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.44e-11
Identity = 43/83 (51.81%), Postives = 50/83 (60.24%), Query Frame = 0 

Query: 50  DAVSCIGIRSVERGTTDATLANACHGVGRGIPDAPDTMLVRCRKCLSRLISPDVISDAMK 109
           D  +  GIR   R   DA+      GVG+G PDA    LVR R+ LSR ISPDV+ D + 
Sbjct: 113 DLQTASGIRFSRRRHADAS-----PGVGKGFPDAD---LVRRRESLSRRISPDVLPDVVL 172

Query: 110 NVSISFSDVSFTFSDVFVRREYP 132
            V ISF DV   F+DVFVRREYP
Sbjct: 173 FVGISFPDVLCIFADVFVRREYP 187

[Close]
BLAST of MELO3C033194.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CX81 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00790 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.29e-08
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 43  NVERGIPDAVSCIGIRSVERGTTDATLANACHGVGRGIPDAPDTMLVRCRKCLSRLIS 100
           NV  GI DA  C GIRS+   ++DAT+A+AC+G+GR   D  D +LVR R+CLSR  S
Sbjct: 271 NVGSGITDAACCFGIRSIGNASSDATMADACYGIGR---DISDVVLVRRRECLSRRFS 325

[Close]
BLAST of MELO3C033194.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UPN4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00290 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.82e-07
Identity = 39/83 (46.99%), Postives = 45/83 (54.22%), Query Frame = 0 

Query: 40  QEKNVERGIPDAVSCIGIRSVERGTTDATLANACHGVGRGIPDAPDTMLVRCRKCLSRLI 99
           + K   RG+PD    +    V RG  D         V RGIPDA   +LV  ++CLSRL 
Sbjct: 482 KSKAFRRGLPDVGDFVSKNGVGRGILD---------VERGIPDA---VLVTHQECLSRLT 541

Query: 100 SPDVISDAMKNVSISFSDVSFTF 122
           SPDV  DA KNV ISF DV F F
Sbjct: 542 SPDVRPDAPKNVGISFPDVFFYF 552

The following BLAST results are available for this feature:
BLAST of MELO3C033194.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK01082.13.43e-1343.10zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa][more]
KAA0036659.11.92e-1141.38zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa][more]
TYK14413.11.33e-1051.81CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0049602.16.79e-0853.45reverse transcriptase [Cucumis melo var. makuwa] >TYK15960.1 reverse transcripta... [more]
KAA0056276.19.96e-0746.99CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK05223.1 CACTA en-... [more]
BLAST of MELO3C033194.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033194.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BQN21.66e-1343.10Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7T5M89.31e-1241.38Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3CRC06.44e-1151.81CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3CX813.29e-0853.45Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94... [more]
A0A5A7UPN44.82e-0746.99CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
BLAST of MELO3C033194.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033194.jh1.t1MELO3C033194.jh1.t1mRNA