MELO3C033191.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C033191.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrovirus-related pol polyprotein from transposon tnt 1-94
Locationchr08: 9577582 .. 9579728 (+)
RNA-Seq ExpressionMELO3C033191.jh1
SyntenyMELO3C033191.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCGTCAGACTATACACCAACTCGTAACGTATGTCTTGATGCATCGAAAGCTATAGTGATACTCCTAATAGCATGAACAAAACGTCGGGATATATTAGAGCATACCTGACATTTTGTTGGCAGTTATTGGAATTTATGTCCTAAAACATGTACTTTGTTATTTGATTCAATAAATTTTATTATTGAATGTTATAATCTTAAAACCAATAAATTTAGGTCCCGAAGCTATTTTATTTAGTTTGTCAAATACACTTGAACTTTATGTTGAGACATAAACATGGATTAAGTTCAAGTTAATAACCCAAATAGTCTATAGTGTATGAATAAGGTTGGGTGCCTTGTTCAGGATAAACACTATGGATGCGGCCCGCTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGAGGGCGTCCTATGTAAATGGTTTACATAGACTAGAACCACGAAGTAGTCACTTTTAGTTATAACACCGTAAACTATAAACTGACTATTTCAATTATGATGACCTAGGTAACTTGATCTTAATCCTGAGCTAACTATGAACTTCTATTCATTCGGTAGTATTCGTAGATCTGCATAGGTGAGGGCAGCTCAACATCGCTGGCCCATTAAGCCTCCAATTTCAGGGGTAAGACCGAGTGGATAGCTAAGGACATAGGGTGCAAGATGGAATTCACTCCTACCCATTTCTGGAATAGTAGATAGGGTTTTCCCTTAAGGACTGAATCCAAGCCTTGAACAAGGGGCCCCACCTTCTCATTGGTCCGAGAAGGATTCTGGTTTATAGGTTGGACCTTAAACCAATTGTTCGATAGTGGATCAGTGAGTCTTAAGGAGCAAGATGTAATCTCGGGGGTAAAATGGTATTTTGACCCAGCCAAGATTACGAACAACCTGTGAAGGACTGACTTGCCCATCATGGTTATATCAAGTGGACAGAAATATATCTATAGTGAGGGGAGTGCAACTAAGAGTCTTTAGTGGAATGACTCTTTAGTTAACGAGTGTTGATTAAGCTTGGTCTAAAAGAGTTTAGCCAGTTAATCTCGAATCATTGGAGCGCATGATCTATAGTTCCATTAGGTTCCCCTACTAGCTCATATGGATTCAACCAAGAACAAAATTTTGAAGTAACTCGAATTGTTCGAATTAAGAAAAGAGAGAGAAACCGACAAATATATAAGATATAAGTTGGTAGAAATAAACTTTAAGCTTTTTGTTTAAATATGATTTAAATAAATATGAATATAGATTCATATTTAAAAGCTTGAAAAGTTTTGAAATGGTCAAAGTTGTAAAATTCAACTTGTTGATTTTTAACTTTGAGAAATAAAACTTTGACTGGGTTTATATACAAATACGATTTGAATTTTAGAAAGATGAATGCGAATTCATACTTGGGAGTTTTGAATTAGTCAAAACGAAAAAATTACTAAAATGTCAAAAAGTTGACTTTTGACTAAGAAAAGTCAAAGTTTGACTTTGACTAAATTGGTCAAATGACCAAAATGTCCCTTTGACTAATTACTTAATTACTAAATGTTAGTGGGCGATGTGAAAGCCGATTATGAATTAAAAAGTTAATGAAAAGATTAGGTGTATATGAAATAAATTGCATGTAATTTGCATGAAGATTTCATATAAAATATTTCTCATTACAGAATGAAAAAAAGAGATGTTCTTCTGGAAAACCACCTAAACGATACGCTCCTCATCTCTCTCTATATTTTACTTTAAAAAACCGAGTCCCACAACTCCGTTCTTGGTCATGAGCATAGTAGGTTAGCTAACTTGGTGGTTGTCCTTGTTCGTGATTTTCGGGCAGAGAAGGAAAATAATTCGAAAAAGAAGCCCATAACTATAAAAGGTAAGTTATTCTTTTACCTTTTTGGCTTCTCGCTTAGGACCATCACATAGCATGTGGTTGTTAACTTCTAAATCGTTTAGATGCATATAGAGTAAAGCATGATCTATATCTTTCGCTGCAGCATGTCGTTTGTTATTTTTCCATCAGCAGTGTCATGAGATATGGCCGCACTCTCAACGCTTCAAGTCATGTGTCGAGAGATATCAAAGCATTAAAAGAATTAGCAAGGTTCTCCTGACGACTGAGTTCTAG

mRNA sequence

ATGAAGCGTCAGACTATACACCAACTCGTAACGATAAACACTATGGATGCGGCCCGCTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGAGGGCGTCCTATGTGAGGGCAGCTCAACATCGCTGGCCCATTAAGCCTCCAATTTCAGGGTGTCATGAGATATGGCCGCACTCTCAACGCTTCAAGTCATGTGTCGAGAGATATCAAAGCATTAAAAGAATTAGCAAGGTTCTCCTGACGACTGAGTTCTAG

Coding sequence (CDS)

ATGAAGCGTCAGACTATACACCAACTCGTAACGATAAACACTATGGATGCGGCCCGCTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGAGGGCGTCCTATGTGAGGGCAGCTCAACATCGCTGGCCCATTAAGCCTCCAATTTCAGGGTGTCATGAGATATGGCCGCACTCTCAACGCTTCAAGTCATGTGTCGAGAGATATCAAAGCATTAAAAGAATTAGCAAGGTTCTCCTGACGACTGAGTTCTAG

Protein sequence

MKRQTIHQLVTINTMDAARSVVSTNDVILNRSCRDMGVRASYVRAAQHRWPIKPPISGCHEIWPHSQRFKSCVERYQSIKRISKVLLTTEF
Homology
[Close]
BLAST of MELO3C033191.jh1 vs. NCBI nr
Match: KAA0045355.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 2.46e-15
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 16  DAARSVVSTNDVILNRSCRDMGVRASYVRAAQHRWPIKPPISG 58
           DAARSV+STNDVILN SCRDMG  ASYVRAAQHRWP KPPI G
Sbjct: 111 DAARSVLSTNDVILNPSCRDMGEGASYVRAAQHRWPNKPPILG 153

[Close]
BLAST of MELO3C033191.jh1 vs. NCBI nr
Match: KAA0041137.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 3.60e-08
Identity = 31/40 (77.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 18   ARSVVSTNDVILNRSCRDMGVRASYVRAAQHRWPIKPPIS 57
            ARSVVSTNDVILNRSCRDMGV+A      Q RWP KPPIS
Sbjct: 1002 ARSVVSTNDVILNRSCRDMGVKA-----VQWRWPNKPPIS 1036

[Close]
BLAST of MELO3C033191.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TVE0 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001340 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.19e-15
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 16  DAARSVVSTNDVILNRSCRDMGVRASYVRAAQHRWPIKPPISG 58
           DAARSV+STNDVILN SCRDMG  ASYVRAAQHRWP KPPI G
Sbjct: 111 DAARSVLSTNDVILNPSCRDMGEGASYVRAAQHRWPNKPPILG 153

[Close]
BLAST of MELO3C033191.jh1 vs. ExPASy TrEMBL
Match: A0A5A7THN2 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00500 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.74e-08
Identity = 31/40 (77.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 18   ARSVVSTNDVILNRSCRDMGVRASYVRAAQHRWPIKPPIS 57
            ARSVVSTNDVILNRSCRDMGV+A      Q RWP KPPIS
Sbjct: 1002 ARSVVSTNDVILNRSCRDMGVKA-----VQWRWPNKPPIS 1036

The following BLAST results are available for this feature:
BLAST of MELO3C033191.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045355.12.46e-1586.05retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m... [more]
KAA0041137.13.60e-0877.50putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa][more]
BLAST of MELO3C033191.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033191.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TVE01.19e-1586.05Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var.... [more]
A0A5A7THN21.74e-0877.50Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C033191.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033191.jh1.t1MELO3C033191.jh1.t1mRNA