MELO3C033191 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033191
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrovirus-related pol polyprotein from transposon tnt 1-94
Location	chr08: 9848294 .. 9850440 (+)
RNA-Seq Expression	MELO3C033191
Synteny	MELO3C033191

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCGTCAGACTATACACCAACTCGTAACGTATGTCTTGATGCATCGAAAGCTATAGTGATACTCCTAATAGCATGAACAAAACGTCGGGATATATTAGAGCATACCTGACATTTTGTTGGCAGTTATTGGAATTTATGTCCTAAAACATGTACTTTGTTATTTGATTCAATAAATTTTATTATTGAATGTTATAATCTTAAAACCAATAAATTTAGGTCCCGAAGCTATTTTATTTAGTTTGTCAAATACACTTGAACTTTATGTTGAGACATAAACATGGATTAAGTTCAAGTTAATAACCCAAATAGTCTATAGTGTATGAATAAGGTTGGGTGCCTTGTTCAGGATAAACACTATGGATGCGGCCCGCTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGAGGGCGTCCTATGTAAATGGTTTACATAGACTAGAACCACGAAGTAGTCACTTTTAGTTATAACACCGTAAACTATAAACTGACTATTTCAATTATGATGACCTAGGTAACTTGATCTTAATCCTGAGCTAACTATGAACTTCTATTCATTCGGTAGTATTCGTAGATCTGCATAGGTGAGGGCAGCTCAACATCGCTGGCCCATTAAGCCTCCAATTTCAGGGGTAAGACCGAGTGGATAGCTAAGGACATAGGGTGCAAGATGGAATTCACTCCTACCCATTTCTGGAATAGTAGATAGGGTTTTCCCTTAAGGACTGAATCCAAGCCTTGAACAAGGGGCCCCACCTTCTCATTGGTCCGAGAAGGATTCTGGTTTATAGGTTGGACCTTAAACCAATTGTTCGATAGTGGATCAGTGAGTCTTAAGGAGCAAGATGTAATCTCGGGGGTAAAATGGTATTTTGACCCAGCCAAGATTACGAACAACCTGTGAAGGACTGACTTGCCCATCATGGTTATATCAAGTGGACAGAAATATATCTATAGTGAGGGGAGTGCAACTAAGAGTCTTTAGTGGAATGACTCTTTAGTTAACGAGTGTTGATTAAGCTTGGTCTAAAAGAGTTTAGCCAGTTAATCTCGAATCATTGGAGCGCATGATCTATAGTTCCATTAGGTTCCCCTACTAGCTCATATGGATTCAACCAAGAACAAAATTTTGAAGTAACTCGAATTGTTCGAATTAAGAAAAGAGAGAGAAACCGACAAATATATAAGATATAAGTTGGTAGAAATAAACTTTAAGCTTTTTGTTTAAATATGATTTAAATAAATATGAATATAGATTCATATTTAAAAGCTTGAAAAGTTTTGAAATGGTCAAAGTTGTAAAATTCAACTTGTTGATTTTTAACTTTGAGAAATAAAACTTTGACTGGGTTTATATACAAATACGATTTGAATTTTAGAAAGATGAATGCGAATTCATACTTGGGAGTTTTGAATTAGTCAAAACGAAAAAATTACTAAAATGTCAAAAAGTTGACTTTTGACTAAGAAAAGTCAAAGTTTGACTTTGACTAAATTGGTCAAATGACCAAAATGTCCCTTTGACTAATTACTTAATTACTAAATGTTAGTGGGCGATGTGAAAGCCGATTATGAATTAAAAAGTTAATGAAAAGATTAGGTGTATATGAAATAAATTGCATGTAATTTGCATGAAGATTTCATATAAAATATTTCTCATTACAGAATGAAAAAAAGAGATGTTCTTCTGGAAAACCACCTAAACGATACGCTCCTCATCTCTCTCTATATTTTACTTTAAAAAACCGAGTCCCACAACTCCGTTCTTGGTCATGAGCATAGTAGGTTAGCTAACTTGGTGGTTGTCCTTGTTCGTGATTTTCGGGCAGAGAAGGAAAATAATTCGAAAAAGAAGCCCATAACTATAAAAGGTAAGTTATTCTTTTACCTTTTTGGCTTCTCGCTTAGGACCATCACATAGCATGTGGTTGTTAACTTCTAAATCGTTTAGATGCATATAGAGTAAAGCATGATCTATATCTTTCGCTGCAGCATGTCGTTTGTTATTTTTCCATCAGCAGTGTCATGAGATATGGCCGCACTCTCAACGCTTCAAGTCATGTGTCGAGAGATATCAAAGCATTAAAAGAATTAGCAAGGTTCTCCTGACGACTGAGTTCTAG

mRNA sequence

ATGAAGCGTCAGACTATACACCAACTCGTAACGATAAACACTATGGATGCGGCCCGCTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGAGGGCGTCCTATGTGAGGGCAGCTCAACATCGCTGGCCCATTAAGCCTCCAATTTCAGGGTGTCATGAGATATGGCCGCACTCTCAACGCTTCAAGTCATGTGTCGAGAGATATCAAAGCATTAAAAGAATTAGCAAGGTTCTCCTGACGACTGAGTTCTAG

Coding sequence (CDS)

ATGAAGCGTCAGACTATACACCAACTCGTAACGATAAACACTATGGATGCGGCCCGCTCCGTAGTTAGTACAAACGATGTAATCCTGAATCGTTCATGTAGAGACATGGGAGTGAGGGCGTCCTATGTGAGGGCAGCTCAACATCGCTGGCCCATTAAGCCTCCAATTTCAGGGTGTCATGAGATATGGCCGCACTCTCAACGCTTCAAGTCATGTGTCGAGAGATATCAAAGCATTAAAAGAATTAGCAAGGTTCTCCTGACGACTGAGTTCTAG

Protein sequence

MKRQTIHQLVTINTMDAARSVVSTNDVILNRSCRDMGVRASYVRAAQHRWPIKPPISGCHEIWPHSQRFKSCVERYQSIKRISKVLLTTEF

Homology

[Close]

BLAST of MELO3C033191 vs. NCBI nr
Match: KAA0045355.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 7.0e-11
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 16  DAARSVVSTNDVILNRSCRDMGVRASYVRAAQHRWPIKPPISG 59
           DAARSV+STNDVILN SCRDMG  ASYVRAAQHRWP KPPI G
Sbjct: 111 DAARSVLSTNDVILNPSCRDMGEGASYVRAAQHRWPNKPPILG 153

[Close]

BLAST of MELO3C033191 vs. NCBI nr
Match: KAA0041137.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 31/40 (77.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 18   ARSVVSTNDVILNRSCRDMGVRASYVRAAQHRWPIKPPIS 58
            ARSVVSTNDVILNRSCRDMG     V+A Q RWP KPPIS
Sbjct: 1002 ARSVVSTNDVILNRSCRDMG-----VKAVQWRWPNKPPIS 1036

[Close]

BLAST of MELO3C033191 vs. ExPASy TrEMBL
Match: A0A5A7TVE0 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001340 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.4e-11
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 16  DAARSVVSTNDVILNRSCRDMGVRASYVRAAQHRWPIKPPISG 59
           DAARSV+STNDVILN SCRDMG  ASYVRAAQHRWP KPPI G
Sbjct: 111 DAARSVLSTNDVILNPSCRDMGEGASYVRAAQHRWPNKPPILG 153

[Close]

BLAST of MELO3C033191 vs. ExPASy TrEMBL
Match: A0A5A7THN2 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00500 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.6e-06
Identity = 31/40 (77.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 18   ARSVVSTNDVILNRSCRDMGVRASYVRAAQHRWPIKPPIS 58
            ARSVVSTNDVILNRSCRDMG     V+A Q RWP KPPIS
Sbjct: 1002 ARSVVSTNDVILNRSCRDMG-----VKAVQWRWPNKPPIS 1036

The following BLAST results are available for this feature:

BLAST of MELO3C033191 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045355.1	7.0e-11	86.05	retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m...	[more]
KAA0041137.1	1.2e-05	77.50	putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033191 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TVE0	3.4e-11	86.05	Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var....	[more]
A0A5A7THN2	5.6e-06	77.50	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of MELO3C033191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033191.1	MELO3C033191.1	mRNA