MELO3C033188.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C033188.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr08: 9459077 .. 9460192 (+)
RNA-Seq Expression	MELO3C033188.jh1
Synteny	MELO3C033188.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGCGTGCCATGAATTTGTATCATGCCTTTTCTTTTTAACTGTTAAATTGTGAAATTGCTAACGTCCATGTATTTTTTCTAATTTGTCATTCTCAGTATGTCAACCTCAAATTGTGCCCCGAGACATGTCTGAACGAAGGAGGAGGAGGGCACTCTTGTGGAATGTTTAATGGAGTTGGTGTCAATGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGTTACCTTGCGCAGTTAGTACGCATGACGGCGGAGAAACTACCTGGATGTCAGGTCCGAGCAACGACTGTAATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAGGCCATTGCCGAAATGCGGGGGCCAACGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGAAGAAGGAATTATTTGATAATTGGGTTAGGGTAAGGAAAATAATATAAACGTCACACAACGTTCACAATGTACATTTACTTAACAATTTTTCAATCAGTACTCATACGTGATATTTTTTTCCCCGCAGTCGCATCCTGCAGCGAAGGGACTCTTGAACGAACCATTCCCGTATTACGACGAACTTACATATGTCTTCGGTCGCGATAGGGCGATCGGTCGGTTCGCTGAGACATTCGCCGACGTCGGGTCTAACGAGCTTGGTGACGGATATGACAGATTTGATATGGGAGATGGAAACGAGGAGTTCCCGCCCGTGTACAACCAGGGGATTGACCTCTCGCTGGACGATGTACGTGCATCCCAACCTTCTTGCACTTCAAAGGGTAGGACCGGATCCAGTGGATCCAAGAGGAAGAAGGGAAGTCAGCGAGACTTCGATGTTAAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCAGAGTGGCCTGCACGTACCCTTGCAAATGACAACCATGTGCGCACGAAATTATTCCGCATATTGTGTGAGATGCCAGAACTTACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTTTGTCTCGTATGAACGACCTTCAGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGAGATTTTGTAGAGTCCTACGAGACATTACGAGATAG

mRNA sequence

ATGTACGCGTGCCATGAATTTTATGTCAACCTCAAATTGTGCCCCGAGACATGTCTGAACGAAGGAGGAGGAGGGCACTCTTGTGGAATGTTTAATGGAGTTGGTGTCAATGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGTTACCTTGCGCAGTTAGTACGCATGACGGCGGAGAAACTACCTGGATGTCAGGTCCGAGCAACGACTGTAATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAGGCCATTGCCGAAATGCGGGGGCCAACGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGAAGAAGGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCTTGAACGAACCATTCCCGTATTACGACGAACTTACATATGTCTTCGGTCGCGATAGGGCGATCGGTCGGTTCGCTGAGACATTCGCCGACGTCGGGTCTAACGAGCTTGGTGACGGATATGACAGATTTGATATGGGAGATGGAAACGAGGAGTTCCCGCCCGTGTACAACCAGGGGATTGACCTCTCGCTGGACGATGTACGTGCATCCCAACCTTCTTGCACTTCAAAGGGTAGGACCGGATCCAGTGGATCCAAGAGGAAGAAGGGAAGTCAGCGAGACTTCGATGTTAAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCAGAGTGGCCTGCACGTACCCTTGCAAATGACAACCATGTGCGCACGAAATTATTCCGCATATTGTGTGAGATGCCAGAACTTACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTTTGTCTCGTATGAACGACCTTCAGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGAGATTTTGTAGAGTCCTACGAGACATTACGAGATAG

Coding sequence (CDS)

ATGTACGCGTGCCATGAATTTTATGTCAACCTCAAATTGTGCCCCGAGACATGTCTGAACGAAGGAGGAGGAGGGCACTCTTGTGGAATGTTTAATGGAGTTGGTGTCAATGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGTTACCTTGCGCAGTTAGTACGCATGACGGCGGAGAAACTACCTGGATGTCAGGTCCGAGCAACGACTGTAATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAGGCCATTGCCGAAATGCGGGGGCCAACGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGAAGAAGGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCTTGAACGAACCATTCCCGTATTACGACGAACTTACATATGTCTTCGGTCGCGATAGGGCGATCGGTCGGTTCGCTGAGACATTCGCCGACGTCGGGTCTAACGAGCTTGGTGACGGATATGACAGATTTGATATGGGAGATGGAAACGAGGAGTTCCCGCCCGTGTACAACCAGGGGATTGACCTCTCGCTGGACGATGTACGTGCATCCCAACCTTCTTGCACTTCAAAGGGTAGGACCGGATCCAGTGGATCCAAGAGGAAGAAGGGAAGTCAGCGAGACTTCGATGTTAAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCAGAGTGGCCTGCACGTACCCTTGCAAATGACAACCATGTGCGCACGAAATTATTCCGCATATTGTGTGAGATGCCAGAACTTACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTTTGTCTCGTATGAACGACCTTCAGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGAGATTTTGTAGAGTCCTACGAGACATTACGAGATAG

Protein sequence

MYACHEFYVNLKLCPETCLNEGGGGHSCGMFNGVGVNGGWKSDNGTFRPGYLAQLVRMTAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPTCSGFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEPFPYYDELTYVFGRDRAIGRFAETFADVGSNELGDGYDRFDMGDGNEEFPPVYNQGIDLSLDDVRASQPSCTSKGRTGSSGSKRKKGSQRDFDVKAIHLALDQTNEQLRQIAEWPARTLANDNHVRTKLFRILCEMPELTSLDRTLLQRHLLSRMNDLQGFVLMPEDERERFCRVLRDITR

Homology

[Close]

BLAST of MELO3C033188.jh1 vs. NCBI nr
Match: KAA0063862.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95514.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 529 bits (1363), Expect = 1.93e-188
Identity = 259/275 (94.18%), Postives = 263/275 (95.64%), Query Frame = 0


Query: 38  GGWKSDNGTFRPGYLAQLVRMTAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPTCS 97
           GGWKSDNGTF PGYLAQLVRMTA+KLPGCQVRATTVIDCRIKTLKRTFQ I EMRGPTCS
Sbjct: 7   GGWKSDNGTFCPGYLAQLVRMTAKKLPGCQVRATTVIDCRIKTLKRTFQVITEMRGPTCS 66

Query: 98  GFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEPFPYYDELTYVFGRDRAIGRFAETFA 157
            FGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEPFPYYDELTYVF  DRAIGRF ETFA
Sbjct: 67  CFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEPFPYYDELTYVFCCDRAIGRFVETFA 126

Query: 158 DVGSNELGDGYDRFDMGDGNEEFPPVYNQGIDLSLDDVRASQPSCTSKGRTGSSGSKRKK 217
           DVGSNE GDGYDRFDMGDGNEEFPPVYNQGIDLSLDDVR SQPSCTSKGRT SSGSKRKK
Sbjct: 127 DVGSNEPGDGYDRFDMGDGNEEFPPVYNQGIDLSLDDVRTSQPSCTSKGRTRSSGSKRKK 186

Query: 218 GSQRDFDVKAIHLALDQTNEQLRQIAEWPARTLANDNHVRTKLFRILCEMPELTSLDRTL 277
           GSQRDFDV+AIHLALDQTNEQLRQIAEWPARTLANDNHVRTK FRILCEMPELTSLDRTL
Sbjct: 187 GSQRDFDVEAIHLALDQTNEQLRQIAEWPARTLANDNHVRTKFFRILCEMPELTSLDRTL 246

Query: 278 LQRHLLSRMNDLQGFVLMPEDERERFCRVLRDITR 312
           LQRHLLSRM+DL+GFVLMPEDERE FCRVLRDITR
Sbjct: 247 LQRHLLSRMDDLRGFVLMPEDEREGFCRVLRDITR 281

[Close]

BLAST of MELO3C033188.jh1 vs. NCBI nr
Match: KAA0066208.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 506 bits (1302), Expect = 9.45e-179
Identity = 248/276 (89.86%), Postives = 260/276 (94.20%), Query Frame = 0


Query: 38  GGWKSDNGTFRPGYLAQLVRMTAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPTCS 97
           GGWKSDNGTFRPGYLAQLVRM AEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGP CS
Sbjct: 31  GGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACS 90

Query: 98  GFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEPFPYYDELTYVFGRDRAIGRFAETFA 157
           GFGWNDEEKCIIA+KELFDNWVRSHPAAKGLLN+PFPYYDELTYVFGRDRA GRFAETFA
Sbjct: 91  GFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 150

Query: 158 DVGSNELGDGYDRFDMGDGNEEFPPVYNQGIDLSLDDVRASQPSCTSKGRTGSSGSKRKK 217
           DVGSNE G GYDRFDMGDGNE+FPPVY+QG+D+S DDVRAS+PS  S+GRTGSSGSKRK+
Sbjct: 151 DVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKR 210

Query: 218 GSQRDFDVKAIHLALDQTNEQLRQIAEWPARTLANDNHVRTKLFRILCEMPELTSLDRTL 277
           GSQRDFDV+AIHLALDQTNEQLRQIAEWPAR LANDNHVRT+ FRIL EMPELTSLDR L
Sbjct: 211 GSQRDFDVEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRAL 270

Query: 278 LQRHLLSRMNDLQGFVLMPEDERERFCRVL-RDITR 312
           LQRHLLSRM+DL GFVLMPEDERE FCRVL RDI R
Sbjct: 271 LQRHLLSRMDDLWGFVLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of MELO3C033188.jh1 vs. NCBI nr
Match: TYK21395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 504 bits (1297), Expect = 5.46e-178
Identity = 245/276 (88.77%), Postives = 261/276 (94.57%), Query Frame = 0


Query: 38  GGWKSDNGTFRPGYLAQLVRMTAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPTCS 97
           GGWKSDNGTFRPGYLAQLVRM AEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGP CS
Sbjct: 31  GGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACS 90

Query: 98  GFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEPFPYYDELTYVFGRDRAIGRFAETFA 157
           GFGWNDEEKCI+A+KELFDNWVRSHPAAKGLLN+PFPYYDELTYVFGRDRA GRFAETFA
Sbjct: 91  GFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 150

Query: 158 DVGSNELGDGYDRFDMGDGNEEFPPVYNQGIDLSLDDVRASQPSCTSKGRTGSSGSKRKK 217
           DVGSNE G GYDRFDMGDGNE+FPPVY+QG+D+S DDVRAS+PS  S+GRTGSSGSKRK+
Sbjct: 151 DVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKR 210

Query: 218 GSQRDFDVKAIHLALDQTNEQLRQIAEWPARTLANDNHVRTKLFRILCEMPELTSLDRTL 277
           GSQRDF+++AIHLALDQTNEQLRQIAEWPAR LANDNHVRT+ FRIL EMPELTSLDR L
Sbjct: 211 GSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRAL 270

Query: 278 LQRHLLSRMNDLQGFVLMPEDERERFCRVL-RDITR 312
           LQRHLLSRM+DL+GFVLMPEDERE FCRVL RDI R
Sbjct: 271 LQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of MELO3C033188.jh1 vs. NCBI nr
Match: KAA0047011.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 501 bits (1291), Expect = 1.55e-177
Identity = 244/276 (88.41%), Postives = 259/276 (93.84%), Query Frame = 0


Query: 38  GGWKSDNGTFRPGYLAQLVRMTAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPTCS 97
           GGWKSDNGTFRPGYLAQLV M AEKLPGCQVRATTVIDCRIKTLKRTFQAI EMRGPTCS
Sbjct: 2   GGWKSDNGTFRPGYLAQLVCMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIVEMRGPTCS 61

Query: 98  GFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEPFPYYDELTYVFGRDRAIGRFAETFA 157
           GFGWNDEEKCI+A+KELFDNWVRSHP AKGLLN+PFPYYDELTYVFGRDRA GRFAETFA
Sbjct: 62  GFGWNDEEKCIVAEKELFDNWVRSHPTAKGLLNQPFPYYDELTYVFGRDRATGRFAETFA 121

Query: 158 DVGSNELGDGYDRFDMGDGNEEFPPVYNQGIDLSLDDVRASQPSCTSKGRTGSSGSKRKK 217
           DVGSNE G GYDRFDMGDGN++FPPVY+QG+D+S DDVRAS+PS  S+GRTGSSGSKRK+
Sbjct: 122 DVGSNESGGGYDRFDMGDGNKDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKR 181

Query: 218 GSQRDFDVKAIHLALDQTNEQLRQIAEWPARTLANDNHVRTKLFRILCEMPELTSLDRTL 277
           GSQRDFDV+AIHLALDQTNEQLRQIAEWPAR LANDNHVRT+ FRIL EMPELTSLDR L
Sbjct: 182 GSQRDFDVEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRAL 241

Query: 278 LQRHLLSRMNDLQGFVLMPEDERERFCRVL-RDITR 312
           LQRHLLSRM+DL+GFVLMPEDERE FCRVL RDI R
Sbjct: 242 LQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER 277

[Close]

BLAST of MELO3C033188.jh1 vs. NCBI nr
Match: KAA0033744.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046274.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049705.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0057135.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 503 bits (1294), Expect = 1.56e-177
Identity = 244/276 (88.41%), Postives = 261/276 (94.57%), Query Frame = 0


Query: 38  GGWKSDNGTFRPGYLAQLVRMTAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPTCS 97
           GGWKSDNGTFRPGYLAQLVRM AEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGP CS
Sbjct: 31  GGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACS 90

Query: 98  GFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEPFPYYDELTYVFGRDRAIGRFAETFA 157
           GFGWNDEEKCI+A+KELFDNWVRSHPAAKGLLN+PFPYYDELTYVFGRDRA GRFAETFA
Sbjct: 91  GFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 150

Query: 158 DVGSNELGDGYDRFDMGDGNEEFPPVYNQGIDLSLDDVRASQPSCTSKGRTGSSGSKRKK 217
           DVGSNE G GYDRFDMGDGNE+FPPVY+QG+D+S DDVRAS+PS  S+GRTGSSGSKRK+
Sbjct: 151 DVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKR 210

Query: 218 GSQRDFDVKAIHLALDQTNEQLRQIAEWPARTLANDNHVRTKLFRILCEMPELTSLDRTL 277
           GSQRDF+++AIHLALDQTNEQLR+IAEWPAR LANDNHVRT+ FRIL EMPELTSLDR L
Sbjct: 211 GSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFRILREMPELTSLDRAL 270

Query: 278 LQRHLLSRMNDLQGFVLMPEDERERFCRVL-RDITR 312
           LQRHLLSRM+DL+GFVLMPEDERE FCRVL RDI R
Sbjct: 271 LQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of MELO3C033188.jh1 vs. ExPASy TrEMBL
Match: A0A5D3B9A8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19391G00010 PE=4 SV=1)

HSP 1 Score: 529 bits (1363), Expect = 9.33e-189
Identity = 259/275 (94.18%), Postives = 263/275 (95.64%), Query Frame = 0


Query: 38  GGWKSDNGTFRPGYLAQLVRMTAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPTCS 97
           GGWKSDNGTF PGYLAQLVRMTA+KLPGCQVRATTVIDCRIKTLKRTFQ I EMRGPTCS
Sbjct: 7   GGWKSDNGTFCPGYLAQLVRMTAKKLPGCQVRATTVIDCRIKTLKRTFQVITEMRGPTCS 66

Query: 98  GFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEPFPYYDELTYVFGRDRAIGRFAETFA 157
            FGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEPFPYYDELTYVF  DRAIGRF ETFA
Sbjct: 67  CFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEPFPYYDELTYVFCCDRAIGRFVETFA 126

Query: 158 DVGSNELGDGYDRFDMGDGNEEFPPVYNQGIDLSLDDVRASQPSCTSKGRTGSSGSKRKK 217
           DVGSNE GDGYDRFDMGDGNEEFPPVYNQGIDLSLDDVR SQPSCTSKGRT SSGSKRKK
Sbjct: 127 DVGSNEPGDGYDRFDMGDGNEEFPPVYNQGIDLSLDDVRTSQPSCTSKGRTRSSGSKRKK 186

Query: 218 GSQRDFDVKAIHLALDQTNEQLRQIAEWPARTLANDNHVRTKLFRILCEMPELTSLDRTL 277
           GSQRDFDV+AIHLALDQTNEQLRQIAEWPARTLANDNHVRTK FRILCEMPELTSLDRTL
Sbjct: 187 GSQRDFDVEAIHLALDQTNEQLRQIAEWPARTLANDNHVRTKFFRILCEMPELTSLDRTL 246

Query: 278 LQRHLLSRMNDLQGFVLMPEDERERFCRVLRDITR 312
           LQRHLLSRM+DL+GFVLMPEDERE FCRVLRDITR
Sbjct: 247 LQRHLLSRMDDLRGFVLMPEDEREGFCRVLRDITR 281

[Close]

BLAST of MELO3C033188.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VES2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002250 PE=4 SV=1)

HSP 1 Score: 506 bits (1302), Expect = 4.58e-179
Identity = 248/276 (89.86%), Postives = 260/276 (94.20%), Query Frame = 0


Query: 38  GGWKSDNGTFRPGYLAQLVRMTAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPTCS 97
           GGWKSDNGTFRPGYLAQLVRM AEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGP CS
Sbjct: 31  GGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACS 90

Query: 98  GFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEPFPYYDELTYVFGRDRAIGRFAETFA 157
           GFGWNDEEKCIIA+KELFDNWVRSHPAAKGLLN+PFPYYDELTYVFGRDRA GRFAETFA
Sbjct: 91  GFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 150

Query: 158 DVGSNELGDGYDRFDMGDGNEEFPPVYNQGIDLSLDDVRASQPSCTSKGRTGSSGSKRKK 217
           DVGSNE G GYDRFDMGDGNE+FPPVY+QG+D+S DDVRAS+PS  S+GRTGSSGSKRK+
Sbjct: 151 DVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKR 210

Query: 218 GSQRDFDVKAIHLALDQTNEQLRQIAEWPARTLANDNHVRTKLFRILCEMPELTSLDRTL 277
           GSQRDFDV+AIHLALDQTNEQLRQIAEWPAR LANDNHVRT+ FRIL EMPELTSLDR L
Sbjct: 211 GSQRDFDVEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRAL 270

Query: 278 LQRHLLSRMNDLQGFVLMPEDERERFCRVL-RDITR 312
           LQRHLLSRM+DL GFVLMPEDERE FCRVL RDI R
Sbjct: 271 LQRHLLSRMDDLWGFVLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of MELO3C033188.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 504 bits (1297), Expect = 2.64e-178
Identity = 245/276 (88.77%), Postives = 261/276 (94.57%), Query Frame = 0


Query: 38  GGWKSDNGTFRPGYLAQLVRMTAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPTCS 97
           GGWKSDNGTFRPGYLAQLVRM AEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGP CS
Sbjct: 31  GGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACS 90

Query: 98  GFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEPFPYYDELTYVFGRDRAIGRFAETFA 157
           GFGWNDEEKCI+A+KELFDNWVRSHPAAKGLLN+PFPYYDELTYVFGRDRA GRFAETFA
Sbjct: 91  GFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 150

Query: 158 DVGSNELGDGYDRFDMGDGNEEFPPVYNQGIDLSLDDVRASQPSCTSKGRTGSSGSKRKK 217
           DVGSNE G GYDRFDMGDGNE+FPPVY+QG+D+S DDVRAS+PS  S+GRTGSSGSKRK+
Sbjct: 151 DVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKR 210

Query: 218 GSQRDFDVKAIHLALDQTNEQLRQIAEWPARTLANDNHVRTKLFRILCEMPELTSLDRTL 277
           GSQRDF+++AIHLALDQTNEQLRQIAEWPAR LANDNHVRT+ FRIL EMPELTSLDR L
Sbjct: 211 GSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRAL 270

Query: 278 LQRHLLSRMNDLQGFVLMPEDERERFCRVL-RDITR 312
           LQRHLLSRM+DL+GFVLMPEDERE FCRVL RDI R
Sbjct: 271 LQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of MELO3C033188.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U086 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G002100 PE=4 SV=1)

HSP 1 Score: 501 bits (1291), Expect = 7.52e-178
Identity = 244/276 (88.41%), Postives = 259/276 (93.84%), Query Frame = 0


Query: 38  GGWKSDNGTFRPGYLAQLVRMTAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPTCS 97
           GGWKSDNGTFRPGYLAQLV M AEKLPGCQVRATTVIDCRIKTLKRTFQAI EMRGPTCS
Sbjct: 2   GGWKSDNGTFRPGYLAQLVCMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIVEMRGPTCS 61

Query: 98  GFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEPFPYYDELTYVFGRDRAIGRFAETFA 157
           GFGWNDEEKCI+A+KELFDNWVRSHP AKGLLN+PFPYYDELTYVFGRDRA GRFAETFA
Sbjct: 62  GFGWNDEEKCIVAEKELFDNWVRSHPTAKGLLNQPFPYYDELTYVFGRDRATGRFAETFA 121

Query: 158 DVGSNELGDGYDRFDMGDGNEEFPPVYNQGIDLSLDDVRASQPSCTSKGRTGSSGSKRKK 217
           DVGSNE G GYDRFDMGDGN++FPPVY+QG+D+S DDVRAS+PS  S+GRTGSSGSKRK+
Sbjct: 122 DVGSNESGGGYDRFDMGDGNKDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKR 181

Query: 218 GSQRDFDVKAIHLALDQTNEQLRQIAEWPARTLANDNHVRTKLFRILCEMPELTSLDRTL 277
           GSQRDFDV+AIHLALDQTNEQLRQIAEWPAR LANDNHVRT+ FRIL EMPELTSLDR L
Sbjct: 182 GSQRDFDVEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRAL 241

Query: 278 LQRHLLSRMNDLQGFVLMPEDERERFCRVL-RDITR 312
           LQRHLLSRM+DL+GFVLMPEDERE FCRVL RDI R
Sbjct: 242 LQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER 277

[Close]

BLAST of MELO3C033188.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 503 bits (1294), Expect = 7.57e-178
Identity = 244/276 (88.41%), Postives = 261/276 (94.57%), Query Frame = 0


Query: 38  GGWKSDNGTFRPGYLAQLVRMTAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPTCS 97
           GGWKSDNGTFRPGYLAQLVRM AEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGP CS
Sbjct: 31  GGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACS 90

Query: 98  GFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEPFPYYDELTYVFGRDRAIGRFAETFA 157
           GFGWNDEEKCI+A+KELFDNWVRSHPAAKGLLN+PFPYYDELTYVFGRDRA GRFAETFA
Sbjct: 91  GFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 150

Query: 158 DVGSNELGDGYDRFDMGDGNEEFPPVYNQGIDLSLDDVRASQPSCTSKGRTGSSGSKRKK 217
           DVGSNE G GYDRFDMGDGNE+FPPVY+QG+D+S DDVRAS+PS  S+GRTGSSGSKRK+
Sbjct: 151 DVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKR 210

Query: 218 GSQRDFDVKAIHLALDQTNEQLRQIAEWPARTLANDNHVRTKLFRILCEMPELTSLDRTL 277
           GSQRDF+++AIHLALDQTNEQLR+IAEWPAR LANDNHVRT+ FRIL EMPELTSLDR L
Sbjct: 211 GSQRDFELEAIHLALDQTNEQLREIAEWPARNLANDNHVRTEFFRILREMPELTSLDRAL 270

Query: 278 LQRHLLSRMNDLQGFVLMPEDERERFCRVL-RDITR 312
           LQRHLLSRM+DL+GFVLMPEDERE FCRVL RDI R
Sbjct: 271 LQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER 306

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BLAST of MELO3C033188.jh1 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 2.9e-06
Identity = 21/72 (29.17%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 73  VIDCRIKTLKRTFQAIAEMRGPTCSGFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEP 132
           V+  R K+L+R F AI  +      GF W++E + + A   ++ +++++H  A+  +  P
Sbjct: 236 VLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRP 295

Query: 133 FPYYDELTYVFG 145
            PYY +L  + G
Sbjct: 296 IPYYKDLCVLCG 305

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BLAST of MELO3C033188.jh1 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 50.4 bits (119), Expect = 2.9e-06
Identity = 21/72 (29.17%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 73  VIDCRIKTLKRTFQAIAEMRGPTCSGFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEP 132
           V+  R K+L+R F AI  +      GF W++E + + A   ++ +++++H  A+  +  P
Sbjct: 236 VLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRP 295

Query: 133 FPYYDELTYVFG 145
            PYY +L  + G
Sbjct: 296 IPYYKDLCVLCG 305

[Close]

BLAST of MELO3C033188.jh1 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 3.8e-06
Identity = 21/80 (26.25%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 73  VIDCRIKTLKRTFQAIAEMRGPTCSGFGWNDEEKCIIAKKELFDNWVRSHPAAKGLLNEP 132
           V+  R K L+R +  I  +     +GF W+     +IA  ++++ ++++HP A+    + 
Sbjct: 377 VLKNRYKHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKT 436

Query: 133 FPYYDELTYVFGRDRAIGRF 153
            P Y  L ++FG++ + GR+
Sbjct: 437 IPSYPNLCFIFGKETSDGRY 454

The following BLAST results are available for this feature:

BLAST of MELO3C033188.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063862.1	1.93e-188	94.18	retrotransposon protein [Cucumis melo var. makuwa] >TYJ95514.1 retrotransposon p...	[more]
KAA0066208.1	9.45e-179	89.86	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK21395.1	5.46e-178	88.77	retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon p...	[more]
KAA0047011.1	1.55e-177	88.41	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0033744.1	1.56e-177	88.41	retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon...	[more]

BLAST of MELO3C033188.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033188.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B9A8	9.33e-189	94.18	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VES2	4.58e-179	89.86	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCZ1	2.64e-178	88.77	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U086	7.52e-178	88.41	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TRV1	7.57e-178	88.41	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C033188.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02210.1	2.9e-06	29.17	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	2.9e-06	29.17	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.2	3.8e-06	26.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..220
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 36..305
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 36..305

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033188.jh1.t1	MELO3C033188.jh1.t1	mRNA