MELO3C033132 (gene) Melon (DHL92) v4

Overview
NameMELO3C033132
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptiontranscription factor E2FA-like isoform X1
Locationchr08: 8209889 .. 8211012 (+)
RNA-Seq ExpressionMELO3C033132
SyntenyMELO3C033132
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTACTCATGACTTCTTAATATCTGATGTCAATACTCAAAGGTCAAGACTAGGAAGCCCACACTCAGAGACAGCTGAAGCACCATCTGATGTTAACTTAAGACAGAGGTGACAAAGGAACAGATCTGATTTTAATTCATTAGTGATCTGTTCCCATCCTCATTAATCCTCAAGATGTTGATTTGTAGCCAAACAAACAGTTGAATTTGACTGGAACTCACGCTCAACTGTACAGTGTAATTTTTATAACCCAACTAATATATTGGGAAAATTTTCCAAGCATGGTATAGAATACAATTGCCGGAGCTAGTCGAGCGGTGAGTGCTGAGGTTAGTATTTGCATATGGTATAGCTAAGATTTCTTCGATCTCTTTCCTGTTTGATGATGCAGTTGGATCATTTCAGGAAATAGAAACAAACTTTTGTAAGGTTGCAGATGGGCAGAAAGAATCATGTAAGATAGGTTTCCAGACATTATCAGAGCGGCAAAAGCTTCAAATGCATTGGTAAAACTTTTCATCTTCGGTTTCAAATCCATTTTAACAATTAAAGGGTTTGAGATATCTATCTGATATGAGGAAGAAATAGTTCGATTTAATTGAAATTTTGTGACAATGGCTTGAAATTTTTCTTGGAGTTAACCAATGATTATGGAAATCATAGATGACTAGAAAACTCATGTGTTTGTCATATTCAAAGTCACTTTAGACATGTTTTTAGTCATTCAAAATCAATTTAATACTTACTTTCTACTTTAGAATTGATTTTGAACAATTAATACATGTTTCAAAGTGGTTCTTAGCATGATGGAAAGTGATGGGAATACTCCAAAAACCGTCCAAAGTTACAGATAACTATGAGTTTGATCGATGAAAACTGGGTATAGTTGAGTTTGGATTAATTTGGTCAAATTTGGTTGGTTTGATTTAGTCCGACCCCAAGAACTGAACCCACTTGCTTACACCTAAACGTCAACCATATTGTAATGAAAATTTAAAAGGGTTCTCTCAACTTTATGTCATTTAAATCTTTTAGTCTATGGTCTTCGTTGGAGATCTAATACCAATTGGTCAAGAAAATTCTGATTGGTCTAAGGTGGGATTGGCTTTGGACCACCATTAA

mRNA sequence

ATGGTTACTCATGACTTCTTAATATCTGATGTCAATACTCAAAGGTCAAGACTAGGAAGCCCACACTCAGAGACAGCTGAAGCACCATCTGATCCAAACAAACAGTTGAATTTGACTGGAACTCACGCTCAACTGTACAGTAATACAATTGCCGGAGCTAGTCGAGCGGTGAGTGCTGAGTCTATGGTCTTCGTTGGAGATCTAATACCAATTGGTCAAGAAAATTCTGATTGGTCTAAGGTGGGATTGGCTTTGGACCACCATTAA

Coding sequence (CDS)

ATGGTTACTCATGACTTCTTAATATCTGATGTCAATACTCAAAGGTCAAGACTAGGAAGCCCACACTCAGAGACAGCTGAAGCACCATCTGATCCAAACAAACAGTTGAATTTGACTGGAACTCACGCTCAACTGTACAGTAATACAATTGCCGGAGCTAGTCGAGCGGTGAGTGCTGAGTCTATGGTCTTCGTTGGAGATCTAATACCAATTGGTCAAGAAAATTCTGATTGGTCTAAGGTGGGATTGGCTTTGGACCACCATTAA

Protein sequence

MVTHDFLISDVNTQRSRLGSPHSETAEAPSDPNKQLNLTGTHAQLYSNTIAGASRAVSAESMVFVGDLIPIGQENSDWSKVGLALDHH
Homology
[Close]
BLAST of MELO3C033132 vs. NCBI nr
Match: XP_016902872.1 (PREDICTED: transcription factor E2FA-like isoform X1 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MVTHDFLISDVNTQRSRLGSPHSETAEAPSDPN 34
           MVTHDFLISDVNTQRSRLGSPHSETAEAPSD N
Sbjct: 428 MVTHDFLISDVNTQRSRLGSPHSETAEAPSDVN 460

[Close]
BLAST of MELO3C033132 vs. NCBI nr
Match: KAA0025224.1 (transcription factor E2FA-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MVTHDFLISDVNTQRSRLGSPHSETAEAPSDPN 34
           MVTHDFLISDVNTQRSRLGSPHSETAEAPSD N
Sbjct: 430 MVTHDFLISDVNTQRSRLGSPHSETAEAPSDVN 462

[Close]
BLAST of MELO3C033132 vs. NCBI nr
Match: XP_016902873.1 (PREDICTED: transcription factor E2FA-like isoform X2 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MVTHDFLISDVNTQRSRLGSPHSETAEAPSDPN 34
           MVTHDFLISDVNTQRSRLGSPHSETAEAPSD N
Sbjct: 427 MVTHDFLISDVNTQRSRLGSPHSETAEAPSDVN 459

[Close]
BLAST of MELO3C033132 vs. NCBI nr
Match: TYK07442.1 (transcription factor E2FA-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 6.0e-07
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 1   MVTHDFLISDVNTQRSRLGSPHSETAEAPSDPN 34
           MV HDFLISDVNTQRSRLGSPHSETAEAPSD N
Sbjct: 430 MVPHDFLISDVNTQRSRLGSPHSETAEAPSDVN 462

[Close]
BLAST of MELO3C033132 vs. NCBI nr
Match: XP_011657726.1 (transcription factor E2FA isoform X1 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 3.9e-06
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1   MVTHDFLISDVNTQRSRLGSPHSETAEAPSDPN 34
           MV HDFL+SDVNTQR RLGSPHSETAEAPSD N
Sbjct: 681 MVPHDFLLSDVNTQRPRLGSPHSETAEAPSDVN 713

[Close]
BLAST of MELO3C033132 vs. ExPASy TrEMBL
Match: A0A5A7SHW6 (Transcription factor E2FA-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00710 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.8e-08
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MVTHDFLISDVNTQRSRLGSPHSETAEAPSDPN 34
           MVTHDFLISDVNTQRSRLGSPHSETAEAPSD N
Sbjct: 430 MVTHDFLISDVNTQRSRLGSPHSETAEAPSDVN 462

[Close]
BLAST of MELO3C033132 vs. ExPASy TrEMBL
Match: A0A1S4E3R8 (transcription factor E2FA-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500930 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.8e-08
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MVTHDFLISDVNTQRSRLGSPHSETAEAPSDPN 34
           MVTHDFLISDVNTQRSRLGSPHSETAEAPSD N
Sbjct: 427 MVTHDFLISDVNTQRSRLGSPHSETAEAPSDVN 459

[Close]
BLAST of MELO3C033132 vs. ExPASy TrEMBL
Match: A0A1S4E3S4 (transcription factor E2FA-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500930 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.8e-08
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MVTHDFLISDVNTQRSRLGSPHSETAEAPSDPN 34
           MVTHDFLISDVNTQRSRLGSPHSETAEAPSD N
Sbjct: 428 MVTHDFLISDVNTQRSRLGSPHSETAEAPSDVN 460

[Close]
BLAST of MELO3C033132 vs. ExPASy TrEMBL
Match: A0A5D3C827 (Transcription factor E2FA-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001720 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-07
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 1   MVTHDFLISDVNTQRSRLGSPHSETAEAPSDPN 34
           MV HDFLISDVNTQRSRLGSPHSETAEAPSD N
Sbjct: 430 MVPHDFLISDVNTQRSRLGSPHSETAEAPSDVN 462

[Close]
BLAST of MELO3C033132 vs. ExPASy TrEMBL
Match: A0A0A0KF09 (E2F_TDP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G454430 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-06
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1   MVTHDFLISDVNTQRSRLGSPHSETAEAPSDPN 34
           MV HDFL+SDVNTQR RLGSPHSETAEAPSD N
Sbjct: 442 MVPHDFLLSDVNTQRPRLGSPHSETAEAPSDVN 474

The following BLAST results are available for this feature:
BLAST of MELO3C033132 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016902872.11.2e-0796.97PREDICTED: transcription factor E2FA-like isoform X1 [Cucumis melo][more]
KAA0025224.11.2e-0796.97transcription factor E2FA-like isoform X1 [Cucumis melo var. makuwa][more]
XP_016902873.11.2e-0796.97PREDICTED: transcription factor E2FA-like isoform X2 [Cucumis melo][more]
TYK07442.16.0e-0793.94transcription factor E2FA-like isoform X1 [Cucumis melo var. makuwa][more]
XP_011657726.13.9e-0687.88transcription factor E2FA isoform X1 [Cucumis sativus][more]
BLAST of MELO3C033132 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033132 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SHW65.8e-0896.97Transcription factor E2FA-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A1S4E3R85.8e-0896.97transcription factor E2FA-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10350093... [more]
A0A1S4E3S45.8e-0896.97transcription factor E2FA-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10350093... [more]
A0A5D3C8272.9e-0793.94Transcription factor E2FA-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A0A0KF091.9e-0687.88E2F_TDP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G454430 PE=... [more]
BLAST of MELO3C033132 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033132.1MELO3C033132.1mRNA