MELO3C033129 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033129
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Nucleolar protein 10
Location	chr08: 25887770 .. 25888342 (+)
RNA-Seq Expression	MELO3C033129
Synteny	MELO3C033129

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTTATGGGCTCCTTCACCACTCACCATTCGTCTTGCACCGCCATCATTCGTTCTCTGTTGCCCTGCTGTTCACCTTTAATTGCACCTTTTTTCATCTCATTGAGTGTCCATCAACTACGTATCATTAGTTTTACATGAACAACAATGGTACTAAAGTCTACACCACAAAGAAGGAATCTCCTCTAGGTTTGACCACACAATCTGCTTATCCAGCTTGTTCCCCCAATGACAAATATTCGAAACAAAGAGTTCTTAAGAAGCGATTTGGCTTGCTACCTACACATCAGCCACCTCCCAAGTACTGAAATAAATGCATTCTCAGTTCACAACTCTATGCCAGTTCTCAAGTGTTGTTTCCCAAACCGCCATCAATAGTTAGAGAGTGAGTTGGTTAAACTTTGATAGATAGTTTGCATTTTCTCTCTATTGCATTGCTTGTAATTGAGCTGTAAAGTACAATTCACTGTTGAACCTTTCTTTAAGCTTGTCAATGGCTTTATGTTGTATTGAACTTTATTTTAGTGAAAGCAAATTTATCTACTTTGAAGATCTGGTTTTAATGCAAAAAAA

mRNA sequence

CATTTTATGGGCTCCTTCACCACTCACCATTCGTCTTGCACCGCCATCATTCGTTCTCTGTTGCCCTGCTGTTCACCTTTAATTGCACCTTTTTTCATCTCATTGAGTGTCCATCAACTACGTATCATTAGTTTTACATGAACAACAATGGTACTAAAGTCTACACCACAAAGAAGGAATCTCCTCTAGGTTTGACCACACAATCTGCTTATCCAGCTTGTTCCCCCAATGACAAATATTCGAAACAAAGAGTTCTTAAGAAGCGATTTGGCTTGCTACCTACACATCAGCCACCTCCCAAGTACTGAAATAAATGCATTCTCAGTTCACAACTCTATGCCAGTTCTCAAGTGTTGTTTCCCAAACCGCCATCAATAGTTAGAGAGTGAGTTGGTTAAACTTTGATAGATAGTTTGCATTTTCTCTCTATTGCATTGCTTGTAATTGAGCTGTAAAGTACAATTCACTGTTGAACCTTTCTTTAAGCTTGTCAATGGCTTTATGTTGTATTGAACTTTATTTTAGTGAAAGCAAATTTATCTACTTTGAAGATCTGGTTTTAATGCAAAAAAA

Coding sequence (CDS)

ATGAACAACAATGGTACTAAAGTCTACACCACAAAGAAGGAATCTCCTCTAGGTTTGACCACACAATCTGCTTATCCAGCTTGTTCCCCCAATGACAAATATTCGAAACAAAGAGTTCTTAAGAAGCGATTTGGCTTGCTACCTACACATCAGCCACCTCCCAAGTACTGA

Protein sequence

MNNNGTKVYTTKKESPLGLTTQSAYPACSPNDKYSKQRVLKKRFGLLPTHQPPPKY

Homology

[Close]

BLAST of MELO3C033129 vs. NCBI nr
Match: XP_027917459.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Vigna unguiculata])

HSP 1 Score: 90.9 bits (224), Expect = 3.8e-15
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPPKY 57
          +N+NG KVYTTKKESPLGL TQSA+PA  SP+DKYS+QRV LKKRFGLLPT QPPPKY
Sbjct: 7  INDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVTLKKRFGLLPTQQPPPKY 64

[Close]

BLAST of MELO3C033129 vs. NCBI nr
Match: XP_008447412.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis melo] >XP_016900440.1 PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 3.8e-15
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPPKY 57
          +N+NG KVYTTKKESPLGL TQSA+PA  SP+DKYS+QRV LKKRFGLLPT QPPPKY
Sbjct: 7  INDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64

[Close]

BLAST of MELO3C033129 vs. NCBI nr
Match: QCD97752.1 (H/ACA ribonucleoprotein complex subunit 3 [Vigna unguiculata])

HSP 1 Score: 90.9 bits (224), Expect = 3.8e-15
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1   MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPPKY 57
           +N+NG KVYTTKKESPLGL TQSA+PA  SP+DKYS+QRV LKKRFGLLPT QPPPKY
Sbjct: 59  INDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVTLKKRFGLLPTQQPPPKY 116

[Close]

BLAST of MELO3C033129 vs. NCBI nr
Match: XP_011651438.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus] >XP_021665893.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Hevea brasiliensis] >XP_027352960.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Abrus precatorius] >XP_031738537.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus] >XP_038718649.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Tripterygium wilfordii] >PIN05065.1 H/ACA snoRNP complex, subunit NOP10 [Handroanthus impetiginosus] >KAE8650652.1 hypothetical protein Csa_011605 [Cucumis sativus] >KAF5738956.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Tripterygium wilfordii])

HSP 1 Score: 90.5 bits (223), Expect = 4.9e-15
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1  MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPPKY 57
          +N NG KVYTTKKESPLGL TQSA+PA  SP+DKYS+QRV LKKRFGLLPT QPPPKY
Sbjct: 7  INENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64

[Close]

BLAST of MELO3C033129 vs. NCBI nr
Match: XP_038693285.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Tripterygium wilfordii] >KAF5727010.1 Nucleolar RNA-binding Nop10p family protein [Tripterygium wilfordii])

HSP 1 Score: 90.1 bits (222), Expect = 6.5e-15
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1  MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPPKY 57
          +N NG KVYTTKKESPLGL TQSA+PA  SP+DKYS+QRV LKKRFGLLPT QPPPKY
Sbjct: 7  INENGDKVYTTKKESPLGLPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64

[Close]

BLAST of MELO3C033129 vs. ExPASy Swiss-Prot
Match: Q93XX8 (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g20490 PE=3 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 4.4e-14
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPPKY 57
          +N  G KVYTTKKESPLGL T+SA+PA  SP+DKYSKQRV LKKRFGLLPT   P +Y
Sbjct: 7  INEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 64

[Close]

BLAST of MELO3C033129 vs. ExPASy Swiss-Prot
Match: Q6DRH5 (H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.4e-09
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1  MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPP 55
          +N NG +VYT KK  P G  T SA+PA  SP+DK+S+ RV +KKRFGLL T QP P
Sbjct: 7  LNENGERVYTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQPRP 62

[Close]

BLAST of MELO3C033129 vs. ExPASy Swiss-Prot
Match: Q9V5P6 (H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=CG7637 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-08
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1  MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPPKY 57
          +N NG +VYT KK +  G  T SA+PA  SP DKYS+QR+ +KKRFGLL T +P P Y
Sbjct: 7  INENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKPEPIY 64

[Close]

BLAST of MELO3C033129 vs. ExPASy Swiss-Prot
Match: Q54J26 (H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium discoideum OX=44689 GN=nop10 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-07
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 2  NNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPPKY 57
          + +G +VYT KKESP    T SA+PA  S +DKYS++R+ LKKRFGLL T QPP ++
Sbjct: 8  DKDGQRVYTLKKESPNHEATYSAHPARFSVDDKYSRERIALKKRFGLLLTQQPPLEF 64

[Close]

BLAST of MELO3C033129 vs. ExPASy Swiss-Prot
Match: Q9NPE3 (H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.0e-07
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1  MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPP 55
          +N  G +VYT KK  P+G  T SA+PA  SP+DKYS+ R+ +KKRF +L T QP P
Sbjct: 7  LNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQPRP 62

[Close]

BLAST of MELO3C033129 vs. ExPASy TrEMBL
Match: A0A1S3BHD2 (Nucleolar protein 10 OS=Cucumis melo OX=3656 GN=LOC103489864 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-15
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPPKY 57
          +N+NG KVYTTKKESPLGL TQSA+PA  SP+DKYS+QRV LKKRFGLLPT QPPPKY
Sbjct: 7  INDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64

[Close]

BLAST of MELO3C033129 vs. ExPASy TrEMBL
Match: A0A4D6M8M9 (Nucleolar protein 10 OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2464 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-15
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1   MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPPKY 57
           +N+NG KVYTTKKESPLGL TQSA+PA  SP+DKYS+QRV LKKRFGLLPT QPPPKY
Sbjct: 59  INDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVTLKKRFGLLPTQQPPPKY 116

[Close]

BLAST of MELO3C033129 vs. ExPASy TrEMBL
Match: A0A2P2IS35 (Nucleolar protein 10 OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-15
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPPKY 57
          +N+NG KVYTTKKESPLGL TQSA+PA  SP+DKYS+QRV LKKRFGLLPT QPPPKY
Sbjct: 7  INDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64

[Close]

BLAST of MELO3C033129 vs. ExPASy TrEMBL
Match: A0A7J7CYK9 (Nucleolar protein 10 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00152 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-15
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1  MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPPKY 57
          +N NG KVYTTKKESPLGL TQSA+PA  SP+DKYS+QRV LKKRFGLLPT QPPPKY
Sbjct: 7  INENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64

[Close]

BLAST of MELO3C033129 vs. ExPASy TrEMBL
Match: A0A2G9GIP1 (Nucleolar protein 10 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22395 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-15
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1  MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPPKY 57
          +N NG KVYTTKKESPLGL TQSA+PA  SP+DKYS+QRV LKKRFGLLPT QPPPKY
Sbjct: 7  INENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64

[Close]

BLAST of MELO3C033129 vs. TAIR 10
Match: AT2G20490.1 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-15
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPPKY 57
          +N  G KVYTTKKESPLGL T+SA+PA  SP+DKYSKQRV LKKRFGLLPT   P +Y
Sbjct: 7  INEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 64

[Close]

BLAST of MELO3C033129 vs. TAIR 10
Match: AT2G20490.2 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 71.2 bits (173), Expect = 2.9e-13
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1  MNNNGTKVYTTKKESPLGLTTQSAYPA-CSPNDKYSKQRV-LKKRFGLLPTHQPPPKY 57
          +N  G KVYTT KESPLGL T+SA+PA  SP+DKYSKQRV LKKRFGLLPT   P +Y
Sbjct: 7  INEKGEKVYTT-KESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 63

The following BLAST results are available for this feature:

BLAST of MELO3C033129 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_027917459.1	3.8e-15	81.03	H/ACA ribonucleoprotein complex subunit 3-like protein [Vigna unguiculata]	[more]
XP_008447412.1	3.8e-15	81.03	PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis melo]...	[more]
QCD97752.1	3.8e-15	81.03	H/ACA ribonucleoprotein complex subunit 3 [Vigna unguiculata]	[more]
XP_011651438.1	4.9e-15	81.03	H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus] >XP_021...	[more]
XP_038693285.1	6.5e-15	81.03	H/ACA ribonucleoprotein complex subunit 3-like protein [Tripterygium wilfordii] ...	[more]

BLAST of MELO3C033129 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93XX8	4.4e-14	72.41	H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana O...	[more]
Q6DRH5	9.4e-09	58.93	H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 S...	[more]
Q9V5P6	2.7e-08	56.90	H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=...	[more]
Q54J26	1.8e-07	56.14	H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium discoideum OX=44689 G...	[more]
Q9NPE3	3.0e-07	53.57	H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 ...	[more]

BLAST of MELO3C033129 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BHD2	1.8e-15	81.03	Nucleolar protein 10 OS=Cucumis melo OX=3656 GN=LOC103489864 PE=3 SV=1	[more]
A0A4D6M8M9	1.8e-15	81.03	Nucleolar protein 10 OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2464 PE=3 SV=1	[more]
A0A2P2IS35	1.8e-15	81.03	Nucleolar protein 10 OS=Rhizophora mucronata OX=61149 PE=3 SV=1	[more]
A0A7J7CYK9	2.4e-15	81.03	Nucleolar protein 10 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00152 PE=...	[more]
A0A2G9GIP1	2.4e-15	81.03	Nucleolar protein 10 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22395 PE=3...	[more]

BLAST of MELO3C033129 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20490.1	3.1e-15	72.41	nucleolar RNA-binding Nop10p family protein	[more]
AT2G20490.2	2.9e-13	70.69	nucleolar RNA-binding Nop10p family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007264	H/ACA ribonucleoprotein complex, subunit Nop10	PFAM	PF04135	Nop10p	coord: 2..43 e-value: 2.5E-8 score: 33.8
IPR007264	H/ACA ribonucleoprotein complex, subunit Nop10	PANTHER	PTHR13305	RIBOSOME BIOGENESIS PROTEIN NOP10	coord: 1..56
None	No IPR available	GENE3D	2.20.28.40	H/ACA ribonucleoprotein complex, subunit Nop10	coord: 2..46 e-value: 1.4E-6 score: 30.2
None	No IPR available	PANTHER	PTHR13305:SF2	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 3-LIKE PROTEIN	coord: 1..56
IPR036756	H/ACA ribonucleoprotein complex, subunit Nop10 superfamily	SUPERFAMILY	144210	Nop10-like SnoRNP	coord: 2..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033129.1	MELO3C033129.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0042254	ribosome biogenesis
molecular_function	GO:0030515	snoRNA binding