MELO3C033121 (gene) Melon (DHL92) v4

Overview


Name	MELO3C033121
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	PMD domain-containing protein
Location	chr08: 25545678 .. 25546178 (-)
RNA-Seq Expression	MELO3C033121
Synteny	MELO3C033121

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGAAAATCAATTGTTGGATAGTGGGATCGTTCTCCCTGTGAGAGAAGGGGCATTCGAGAATATCATAGACTCTCAAATACTCAAAGACAATTTCATTCTTTTGCCTAAATGGTCTAAAGAAAAGTCCGTAAATCCAAATTCCCCTTTAACATCTTGGTTCCTTGAATCCTCGATCCATAACAAGATTCCAAATAAAAATCTTGAATCAACATTGAGTCATTGAATGATAAGCGACTCAAAATTTCGTTGGGGCACTGTGCTCAAAGTCCATGGAGAATTTTACTATCTTTCTCATTATTGGGAATGGTTAGAGCTTGTCGTTGCTAAAAATACGGCAATACTAAAAAAAGCTCGTTTATTTGATGTTGTGATGGCTTTCCTGTACACATATGATCGCAATAGCGATACTGTTCGGGCTTTTTGCGAGGCATGGTGTCCTTCAACGAACACCCTTCACACCTCGGCTGGTGAGATGTCCATCTTCTTATGGAACTTATGG

mRNA sequence

GATGAAAATCAATTGTTGGATAGTGGGATCGTTCTCCCTGTGAGAGAAGGGGCATTCGAGAATATCATAGACTCTCAAATACTCAAAGACAATTTCATTCTTTTGCCTAAATGGTCTAAAGAAAAGTCCGTAAATCCAAATTCCCCTTTAACATCTTGGTTCCTTGAATCCTCGATCCATAACAAGATTCCAAATAAAAATCTTGAATCAACATTGAGTCATTGAATGATAAGCGACTCAAAATTTCGTTGGGGCACTGTGCTCAAAGTCCATGGAGAATTTTACTATCTTTCTCATTATTGGGAATGGTTAGAGCTTGTCGTTGCTAAAAATACGGCAATACTAAAAAAAGCTCGTTTATTTGATGTTGTGATGGCTTTCCTGTACACATATGATCGCAATAGCGATACTGTTCGGGCTTTTTGCGAGGCATGGTGTCCTTCAACGAACACCCTTCACACCTCGGCTGGTGAGATGTCCATCTTCTTATGGAACTTATGG

Coding sequence (CDS)

ATGATAAGCGACTCAAAATTTCGTTGGGGCACTGTGCTCAAAGTCCATGGAGAATTTTACTATCTTTCTCATTATTGGGAATGGTTAGAGCTTGTCGTTGCTAAAAATACGGCAATACTAAAAAAAGCTCGTTTATTTGATGTTGTGATGGCTTTCCTGTACACATATGATCGCAATAGCGATACTGTTCGGGCTTTTTGCGAGGCATGGTGTCCTTCAACGAACACCCTTCACACCTCGGCTGGTGAGATGTCCATCTTCTTATGGAACTTATGG

Protein sequence

MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNSDTVRAFCEAWCPSTNTLHTSAGEMSIFLWNLW

Homology

[Close]

BLAST of MELO3C033121 vs. NCBI nr
Match: KAA0025723.1 (uncharacterized protein E6C27_scaffold653G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 7.3e-48
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNS 60
          MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNS
Sbjct: 1  MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNS 60

Query: 61 DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNLW 93
          DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNLW
Sbjct: 61 DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNLW 92

[Close]

BLAST of MELO3C033121 vs. NCBI nr
Match: TYK06154.1 (uncharacterized protein E5676_scaffold287G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 199.1 bits (505), Expect = 1.6e-47
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNS 60
          MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVA+NTAILKKARLFDVVMAFLYTYDRNS
Sbjct: 1  MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVARNTAILKKARLFDVVMAFLYTYDRNS 60

Query: 61 DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNLW 93
          DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNLW
Sbjct: 61 DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNLW 92

[Close]

BLAST of MELO3C033121 vs. NCBI nr
Match: KAA0050733.1 (uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ95697.1 uncharacterized protein E5676_scaffold726G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 1.7e-41
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1   MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNS 60
           MISDSK RWGTVLKVHGEFYYLSHYWEWLEL VA+NTAILK+ RLFD VMA +YTYDRNS
Sbjct: 95  MISDSKIRWGTVLKVHGEFYYLSHYWEWLELAVARNTAILKRDRLFDAVMASMYTYDRNS 154

Query: 61  DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNLW 93
           D VRAFCEAWCPSTNTLHTSAGEMSI LW+LW
Sbjct: 155 DIVRAFCEAWCPSTNTLHTSAGEMSISLWDLW 186

[Close]

BLAST of MELO3C033121 vs. NCBI nr
Match: KAA0033523.1 (hypothetical protein E6C27_scaffold261G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 1.2e-39
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1   MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNS 60
           MISDSK RWGTVLKVHGEFYYLSH+WEWLEL VA+N  ILK+ARLFDVVMA +YTYDRNS
Sbjct: 204 MISDSKIRWGTVLKVHGEFYYLSHHWEWLELAVARNMTILKRARLFDVVMASMYTYDRNS 263

Query: 61  DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNL 92
           D VRAFCEAWCPSTNTLHTSAGEMSI LW+L
Sbjct: 264 DIVRAFCEAWCPSTNTLHTSAGEMSISLWDL 294

[Close]

BLAST of MELO3C033121 vs. NCBI nr
Match: TYJ95665.1 (hypothetical protein E5676_scaffold104G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 1.2e-39
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1   MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNS 60
           MISDSK RWGTVLKVHGEFYYLSH+WEWLEL VA+N  ILK+ARLFDVVMA +YTYDRNS
Sbjct: 95  MISDSKIRWGTVLKVHGEFYYLSHHWEWLELAVARNMTILKRARLFDVVMASMYTYDRNS 154

Query: 61  DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNL 92
           D VRAFCEAWCPSTNTLHTSAGEMSI LW+L
Sbjct: 155 DIVRAFCEAWCPSTNTLHTSAGEMSISLWDL 185

[Close]

BLAST of MELO3C033121 vs. ExPASy TrEMBL
Match: A0A5A7SM27 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00020 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.5e-48
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNS 60
          MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNS
Sbjct: 1  MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNS 60

Query: 61 DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNLW 93
          DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNLW
Sbjct: 61 DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNLW 92

[Close]

BLAST of MELO3C033121 vs. ExPASy TrEMBL
Match: A0A5D3C4B8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00020 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 7.9e-48
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNS 60
          MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVA+NTAILKKARLFDVVMAFLYTYDRNS
Sbjct: 1  MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVARNTAILKKARLFDVVMAFLYTYDRNS 60

Query: 61 DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNLW 93
          DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNLW
Sbjct: 61 DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNLW 92

[Close]

BLAST of MELO3C033121 vs. ExPASy TrEMBL
Match: A0A5A7U4C3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00240 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.4e-42
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1   MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNS 60
           MISDSK RWGTVLKVHGEFYYLSHYWEWLEL VA+NTAILK+ RLFD VMA +YTYDRNS
Sbjct: 95  MISDSKIRWGTVLKVHGEFYYLSHYWEWLELAVARNTAILKRDRLFDAVMASMYTYDRNS 154

Query: 61  DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNLW 93
           D VRAFCEAWCPSTNTLHTSAGEMSI LW+LW
Sbjct: 155 DIVRAFCEAWCPSTNTLHTSAGEMSISLWDLW 186

[Close]

BLAST of MELO3C033121 vs. ExPASy TrEMBL
Match: A0A5D3BB02 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00970 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.0e-40
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1   MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNS 60
           MISDSK RWGTVLKVHGEFYYLSH+WEWLEL VA+N  ILK+ARLFDVVMA +YTYDRNS
Sbjct: 95  MISDSKIRWGTVLKVHGEFYYLSHHWEWLELAVARNMTILKRARLFDVVMASMYTYDRNS 154

Query: 61  DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNL 92
           D VRAFCEAWCPSTNTLHTSAGEMSI LW+L
Sbjct: 155 DIVRAFCEAWCPSTNTLHTSAGEMSISLWDL 185

[Close]

BLAST of MELO3C033121 vs. ExPASy TrEMBL
Match: A0A5A7SST7 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00660 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.0e-40
Identity = 79/91 (86.81%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1   MISDSKFRWGTVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNS 60
           MISDSK RWGTVLKVHGEFYYLSH+WEWLEL VA+N  ILK+ARLFDVVMA +YTYDRNS
Sbjct: 204 MISDSKIRWGTVLKVHGEFYYLSHHWEWLELAVARNMTILKRARLFDVVMASMYTYDRNS 263

Query: 61  DTVRAFCEAWCPSTNTLHTSAGEMSIFLWNL 92
           D VRAFCEAWCPSTNTLHTSAGEMSI LW+L
Sbjct: 264 DIVRAFCEAWCPSTNTLHTSAGEMSISLWDL 294

[Close]

BLAST of MELO3C033121 vs. TAIR 10
Match: AT1G50790.1 (Plant mobile domain protein family )

HSP 1 Score: 48.9 bits (115), Expect = 2.5e-06
Identity = 23/61 (37.70%), Postives = 33/61 (54.10%), Query Frame = 0


Query: 28  WLELVVAKNTAILKKARLFDVVMAFLYTYDRNSDTVRAFCEAWCPSTNTLHTSAGEMSIF 87
           W   + A +  I +KA +F+ ++A  Y   +N+D V    E WCP TNT   S GE +I 
Sbjct: 67  WARKMSALHEPIWRKAGIFEAILASTYKIFKNTDLVMGIAEKWCPDTNTFVFSWGEATIT 126

Query: 88  L 89
           L
Sbjct: 127 L 127

[Close]

BLAST of MELO3C033121 vs. TAIR 10
Match: AT1G50820.1 (Aminotransferase-like, plant mobile domain family protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 23/78 (29.49%), Postives = 37/78 (47.44%), Query Frame = 0


Query: 11  TVLKVHGEFYYLSHYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNSDTVRAFCEAW 70
           T +K  G  +    +  W   + + +  I +KA +F+ V+A  Y   +++D V    E W
Sbjct: 46  TSIKFWGWRFPNKKFKSWARKMASLHEPIWRKAGIFEAVIASTYKIPKDTDLVLGLAEKW 105

Query: 71  CPSTNTLHTSAGEMSIFL 89
           CP T T     GE +I L
Sbjct: 106 CPDTKTFIFPWGEATITL 123

[Close]

BLAST of MELO3C033121 vs. TAIR 10
Match: AT1G50770.1 (Aminotransferase-like, plant mobile domain family protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.8e-04
Identity = 21/65 (32.31%), Postives = 32/65 (49.23%), Query Frame = 0


Query: 24  HYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNSDTVRAFCEAWCPSTNTLHTSAGE 83
           ++  W   + A +  I +KA +F+ V A  Y  + N++ V    E WCP T T     GE
Sbjct: 62  NFKSWARKMAALHEPIWRKAGIFEAVTASTYKINPNTELVLGIAEKWCPDTKTFVFPWGE 121

Query: 84  MSIFL 89
            +I L
Sbjct: 122 TTITL 126

[Close]

BLAST of MELO3C033121 vs. TAIR 10
Match: AT1G50750.1 (Plant mobile domain protein family )

HSP 1 Score: 41.2 bits (95), Expect = 5.3e-04
Identity = 19/61 (31.15%), Postives = 30/61 (49.18%), Query Frame = 0


Query: 28  WLELVVAKNTAILKKARLFDVVMAFLYTYDRNSDTVRAFCEAWCPSTNTLHTSAGEMSIF 87
           W   + A +    ++A +F+ VMA +Y   +N D +    E WCP T T     GE ++ 
Sbjct: 42  WAIEMAALHEPTWREAGIFEAVMASIYRIPKNPDLILGIAEKWCPYTKTFVFPWGETAVT 101

Query: 88  L 89
           L
Sbjct: 102 L 102

[Close]

BLAST of MELO3C033121 vs. TAIR 10
Match: AT1G51538.1 (Aminotransferase-like, plant mobile domain family protein )

HSP 1 Score: 40.8 bits (94), Expect = 6.9e-04
Identity = 19/65 (29.23%), Postives = 33/65 (50.77%), Query Frame = 0


Query: 24  HYWEWLELVVAKNTAILKKARLFDVVMAFLYTYDRNSDTVRAFCEAWCPSTNTLHTSAGE 83
           ++  W + + A +  I +KA +F+ + A +Y   +N   + A  E WCP T +     GE
Sbjct: 60  NFKSWAKKMEALHEPIWRKAGIFEAIKASMYKIRKNQSLLLALVEKWCPETKSFLFPWGE 119

Query: 84  MSIFL 89
            +I L
Sbjct: 120 ATITL 124

The following BLAST results are available for this feature:

BLAST of MELO3C033121 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025723.1	7.3e-48	100.00	uncharacterized protein E6C27_scaffold653G00020 [Cucumis melo var. makuwa]	[more]
TYK06154.1	1.6e-47	98.91	uncharacterized protein E5676_scaffold287G00020 [Cucumis melo var. makuwa]	[more]
KAA0050733.1	1.7e-41	88.04	uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAA0033523.1	1.2e-39	86.81	hypothetical protein E6C27_scaffold261G00660 [Cucumis melo var. makuwa]	[more]
TYJ95665.1	1.2e-39	86.81	hypothetical protein E5676_scaffold104G00970 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033121 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033121 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SM27	3.5e-48	100.00	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3C4B8	7.9e-48	98.91	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U4C3	8.4e-42	88.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BB02	6.0e-40	86.81	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SST7	6.0e-40	86.81	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of MELO3C033121 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50790.1	2.5e-06	37.70	Plant mobile domain protein family	[more]
AT1G50820.1	1.1e-04	29.49	Aminotransferase-like, plant mobile domain family protein	[more]
AT1G50770.1	1.8e-04	32.31	Aminotransferase-like, plant mobile domain family protein	[more]
AT1G50750.1	5.3e-04	31.15	Plant mobile domain protein family	[more]
AT1G51538.1	6.9e-04	29.23	Aminotransferase-like, plant mobile domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36607:SF19	SUBFAMILY NOT NAMED	coord: 4..91
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 4..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033121.1	MELO3C033121.1	mRNA