MELO3C033117.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C033117.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionArf-GAP domain-containing protein
Locationchr08: 7694635 .. 7697885 (+)
RNA-Seq ExpressionMELO3C033117.jh1
SyntenyMELO3C033117.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTGATAGCTTCATCGACAAGAACGTAGTTTTCAAGAGGCTAAAGGCCAAGTCGGAGAACAAGGTAAGTGTGACTAATTCATCTTCAGATTTGGATCGAAAATTGCACTAGATTAATTCTGTTTGTTTTTTGTTTTTTCAGATCTGTTTCGATTGTAATGCGAAGAGGGAGGCTGTTAAAATAATTAGGGTTTATGATCAAATCAATATTTTCATTTCTAGTATTTTCCTTTTATGTTATTTTCCTTGTTTGTATTATTGGGAGTATATAATTTTGGAACTCTCTATTCTGATTATTCAAATTATTATTCAATAATATTGTACAAGATTAACAGAAAATAGATTCTCAGGATATTTGGAAAGTGATTGCTTTTTGGTTGAAAGACTTTTGAAAAAGACTTTTGAAAGAACTTGCTTTGCTTCAATACATATTGATAAATGAACATTATGAGTTTCTTGGATGCTAATTTAGAGTTCATACTGGATTTGGAGTAATACATTTTGATTCTGGTTTTGATAAGGTGAGCTTGAGATGGCTTTTGGATGTGTGAAATGTGCTCAAACCTATTAAAAGATTTTTTTCCCTCAAAATTTCGATATGTTGTGGATATAGTGTGCTAAGTGGTTAAATAGTCAAAAGTATTTTTAAAAAACTCTCATTTTCACCAAGGAATTGCTCATCCCAAGCTCATACTTAGTCTACTTGTGAACTATAATCCAATCCATTCTGTTTGTCTAGTGAGTTTATATGTTACTTATGACGTTAGCTTTACTGTTTAGCCTCAGTTTTTCCAGAATATGATAATACCCCATTAGTGTTAAAACTGACCTTTTCCCCAGCCTTTTTAGCATTGATACTTGATCTTATCTGTTTTGCCTTTAACAGATCGGTAGTGTATTTGGTTCTGAGTTTTTGTTGAAATTGTACCTGGCTGGAGCAATTGATGGGTCAGCATTTTACTTGGCGCATCATCTATTCCAAGCATCGTCCTCAAAGGTATGCAAAGTGTGTATGGCTCAGTTCCTTCATTCAAATTTCTGTGACAGTCATCATGCAAAATTTCTGGGTCGTAGAGAGGTAACTGCTTTTGATATGATGCAAAATTTCTGGGTCTATTTTTCCTCCTCTTTCCCGTTTCATTTTGTGATTATTGTGTATTATTTTTGTTAAGAGTAGCAAGATTTCGTAGTTAAACAAATCTTTTCTTTTTTCTAGATTTTAAGAAGAAAAAATGAGGATTATTTGGCAGCATTATTTTACTCAATTTATTTAACTTTAAATTAAGAGTTCTCTTGTGATCCCCCATATATAGTAATATATATATATATTGAGATTAAATTTGATATACTTTTTCATTTAGATATCCATCAAATCTTTAAAAAAGAAACGATTGTTATCTTCATATTTAAATATGGATTTATTACTATTTATTCGCATATATATTTGGAAAAAATATTAGATACTCAAAGTATCTTTGAAATTTAATTACAAAAATCGATGGATTACAATCTTTTTAAGTTTAAATTTTGATTACCTAAGAAAATCAATTTTGTTTAATTCCCTTTCTCAAGGGAGACGAGTGAGAGAAATTAAAAAAGTCTTTCTCATTTATCTCTTTGGTCTACATTTATCTCTTTGGACTTCTCTTGATATATTCATGATTCTTAGCTCTGCTCTTGGGTTATTTTCTTTTTGGCTCTTTTGACGAATATACCATATCCATTTCTTTTCCTTCAAAAGAAAATATATCGATGCGGGTATTTGCCGATTGTCGATTGTTTTAGAAACTGAATCTTAAACGTTGTTTGCTGGTTTTCTGCTTTCTACAGAGCCGGTCGTTTTAGGGCAACGACCCAGTGCGAGCACAAGGATTGGTATGCTTTTGGAAATCCTTATACTTCATTACTTTTTCAACTGAAAATGCCAACTGAAGACTTTAGCTATCTCCTCAGTAAACCTATTTCCAACGCAAAATTTGTTTTTTTCAAAATATACATCGTATGCTCTGAATGCATTGTTTCTTCTGTTAGTGTTGGATATGAGACTTTTCAAAAGATACCAGACTTCTCAATAAGATACTTTCAAAAAAAGTTTAGCAAAATTCGACCACATGTTTCCTGCTATGAATTATTCTTTAATTAGTTACTGGTCAAAATCAAAGCTCCACCACCATAAAGATTATTAAAAAATGGTGTTTATTGATTATTATTATTTCTTTTAAACACTTTGAAAATGCAGAAATCAGATGAATCATGCACTCCTATACTTCTTGTCGTAAACAAGATATACTGTGCTCTAGTCTTGGTATTGGTAAGTTGTATATTGGTAAGTCATGTCTCCGCTCTAGTCTTTTTCAGGGGATTCATCCCATTTTGGTCGCCTTCAACTTCTGAAAGTTTTTTCTTTGGCCATTTTCAAAACACTCGAGTGTGCTAATTATATAATCCTCAATAGTTTGTTCCTGCTTTCCATGTTCATTTTCCCTTCGTAATTGTATATATTTAAATATTTGAATGCATTGATAGCTTAGAGAGGTGGGAGAGTTATGTTAATTGAATGTTCCTATGAAATTTTGTGCAGTCGTATAGTAGATGATATAGTAGCAGCTGATGTCGATGACCTGTGCTCTTGGAAAGGATTGGTAGAATCTCGGCTTACGAATTTGATGTTGTTGGTAATTTTTCTTACATCCTAAATGAAGCACAGTGATGATATAATGATACTGTTTCTCAACTTGAAAACATTTCTGTACTTGAGTTGAATTAAAATTTCTGGTTCTAGAAATATCTTTCCTTTGTCCATGTTTTTTTTGTAATTCTCAAAATATTCTGGATCTTTTGGTCTCTCGTTTCACTGCTGTTTAGCATTTTCTGGTTCATCTTTGTTGTGAACTGTTTTGTAATACTTTGTTTTAGATGATCCAACTCCTTAATTATTACTAATATGGATGATTCTTTTGTTATTTATTTATTGTTTCATTTGTGAGAATCCATGCATTTCCTTTCACATATGTATGCTTTCAAAGAAGACTCATGTTTGTTATTGTTGTTGTTGTGTGACGATGGAGTGGTGATATTTCTTTATTGTGGAGGAGAATATCCTTTGGCTTGTGTTTATTTTGATTTTTTTATTTTATTATTGAATTGAATTTGTAGATTCTAAAGAAATATGAGAAAAACCGTTCAGACATGGCTTGTTTGGTAGTTTTGAAGATGAACTCTGTAAGCTGTTGTCTGATTATTTGA

mRNA sequence

ATGGCGTCTGATAGCTTCATCGACAAGAACGTAGTTTTCAAGAGGCTAAAGGCCAAGTCGGAGAACAAGATCTGTTTCGATTGTAATGCGAAGAGGGAGGCTGTTAAAATAATTAGGAAATCAGATGAATCATGCACTCCTATACTTCTTGTCGTAAACAAGATATACTGTGCTCTAGTCTTGGTATTGAGAGGTGGGAGAGTTATGTTAATTGAATGTTCCTATGAAATTTTGTGCAGTCGTATAGTAGATGATATAGTAGCAGCTGATGTCGATGACCTGTGCTCTTGGAAAGGATTGGTAGAATCTCGGCTTACGAATTTGATGTTGTTGATTCTAAAGAAATATGAGAAAAACCGTTCAGACATGGCTTGTTTGGTAGTTTTGAAGATGAACTCTGTAAGCTGTTGTCTGATTATTTGA

Coding sequence (CDS)

ATGGCGTCTGATAGCTTCATCGACAAGAACGTAGTTTTCAAGAGGCTAAAGGCCAAGTCGGAGAACAAGATCTGTTTCGATTGTAATGCGAAGAGGGAGGCTGTTAAAATAATTAGGAAATCAGATGAATCATGCACTCCTATACTTCTTGTCGTAAACAAGATATACTGTGCTCTAGTCTTGGTATTGAGAGGTGGGAGAGTTATGTTAATTGAATGTTCCTATGAAATTTTGTGCAGTCGTATAGTAGATGATATAGTAGCAGCTGATGTCGATGACCTGTGCTCTTGGAAAGGATTGGTAGAATCTCGGCTTACGAATTTGATGTTGTTGATTCTAAAGAAATATGAGAAAAACCGTTCAGACATGGCTTGTTTGGTAGTTTTGAAGATGAACTCTGTAAGCTGTTGTCTGATTATTTGA

Protein sequence

MASDSFIDKNVVFKRLKAKSENKICFDCNAKREAVKIIRKSDESCTPILLVVNKIYCALVLVLRGGRVMLIECSYEILCSRIVDDIVAADVDDLCSWKGLVESRLTNLMLLILKKYEKNRSDMACLVVLKMNSVSCCLII
Homology
[Close]
BLAST of MELO3C033117.jh1 vs. NCBI nr
Match: XP_011652650.1 (probable ADP-ribosylation factor GTPase-activating protein AGD9 [Cucumis sativus] >KGN60383.1 hypothetical protein Csa_002512 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 6.53e-08
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKICFDCNAK 31
          MASDSF DKN VFKRLKAKSENKICFDCNAK
Sbjct: 1  MASDSFTDKNAVFKRLKAKSENKICFDCNAK 31

[Close]
BLAST of MELO3C033117.jh1 vs. NCBI nr
Match: XP_008465980.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD9 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 6.56e-08
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKICFDCNAK 31
          MASDSF DKN VFKRLKAKSENKICFDCNAK
Sbjct: 1  MASDSFTDKNAVFKRLKAKSENKICFDCNAK 31

[Close]
BLAST of MELO3C033117.jh1 vs. NCBI nr
Match: KAF3449442.1 (hypothetical protein FNV43_RR10170 [Rhamnella rubrinervis])

HSP 1 Score: 60.8 bits (146), Expect = 1.22e-07
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKICFDCNAK 31
          MASDSF DKNVVFK+LKAKSENK+CFDCNAK
Sbjct: 1  MASDSFTDKNVVFKKLKAKSENKMCFDCNAK 31

[Close]
BLAST of MELO3C033117.jh1 vs. NCBI nr
Match: KHN42738.1 (ADP-ribosylation factor GTPase-activating protein AGD10 [Glycine soja])

HSP 1 Score: 56.6 bits (135), Expect = 1.23e-07
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKICFDCNAK 31
          MASD F DKN VF++LKAKSENK+CFDCNAK
Sbjct: 1  MASDGFTDKNTVFRKLKAKSENKMCFDCNAK 31

[Close]
BLAST of MELO3C033117.jh1 vs. NCBI nr
Match: XP_038886899.1 (probable ADP-ribosylation factor GTPase-activating protein AGD9 isoform X1 [Benincasa hispida])

HSP 1 Score: 60.5 bits (145), Expect = 1.65e-07
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKICFDCNAK 31
          MASDSF DKN VF+RLKAKSENKICFDCNAK
Sbjct: 1  MASDSFTDKNAVFRRLKAKSENKICFDCNAK 31

[Close]
BLAST of MELO3C033117.jh1 vs. ExPASy Swiss-Prot
Match: Q9FIQ0 (Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana OX=3702 GN=AGD9 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.4e-06
Identity = 21/31 (67.74%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKICFDCNAK 32
          MA+++  DKNVVF++LK+KSENK+CFDC+AK
Sbjct: 1  MATENLTDKNVVFRKLKSKSENKVCFDCSAK 31

[Close]
BLAST of MELO3C033117.jh1 vs. ExPASy Swiss-Prot
Match: O82171 (ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana OX=3702 GN=AGD10 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.4e-05
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKICFDCNAK 32
          MAS++  DK  VFK+LKAKS+NKICFDCNAK
Sbjct: 1  MASENLNDKISVFKKLKAKSDNKICFDCNAK 31

[Close]
BLAST of MELO3C033117.jh1 vs. ExPASy Swiss-Prot
Match: Q8H100 (Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana OX=3702 GN=AGD8 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.4e-05
Identity = 19/30 (63.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 2  ASDSFIDKNVVFKRLKAKSENKICFDCNAK 32
          ++D+  DKN+VF++LK+KSENK+CFDC+AK
Sbjct: 5  SADNLTDKNIVFRKLKSKSENKVCFDCSAK 34

[Close]
BLAST of MELO3C033117.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LF23 (Arf-GAP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G902260 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.16e-08
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKICFDCNAK 31
          MASDSF DKN VFKRLKAKSENKICFDCNAK
Sbjct: 1  MASDSFTDKNAVFKRLKAKSENKICFDCNAK 31

[Close]
BLAST of MELO3C033117.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CQ59 (probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Cucumis melo OX=3656 GN=LOC103503548 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.18e-08
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKICFDCNAK 31
          MASDSF DKN VFKRLKAKSENKICFDCNAK
Sbjct: 1  MASDSFTDKNAVFKRLKAKSENKICFDCNAK 31

[Close]
BLAST of MELO3C033117.jh1 vs. ExPASy TrEMBL
Match: A0A2N9GC55 (Arf-GAP domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24596 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.17e-08
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKICFDCNAK 31
          MASD+F DKN VF++LKAKSENK+CFDCNAK
Sbjct: 1  MASDAFSDKNAVFRKLKAKSENKMCFDCNAK 31

[Close]
BLAST of MELO3C033117.jh1 vs. ExPASy TrEMBL
Match: A0A0B2SD82 (ADP-ribosylation factor GTPase-activating protein AGD10 OS=Glycine soja OX=3848 GN=glysoja_048410 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.98e-08
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKICFDCNAK 31
          MASD F DKN VF++LKAKSENK+CFDCNAK
Sbjct: 1  MASDGFTDKNTVFRKLKAKSENKMCFDCNAK 31

[Close]
BLAST of MELO3C033117.jh1 vs. ExPASy TrEMBL
Match: A0A151RC72 (Putative ADP-ribosylation factor GTPase-activating protein AGD9 OS=Cajanus cajan OX=3821 GN=KK1_038618 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.67e-07
Identity = 24/31 (77.42%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKICFDCNAK 31
          MAS+ F DKN+VF++LKAKSENK+CFDCNAK
Sbjct: 1  MASEGFTDKNLVFRKLKAKSENKMCFDCNAK 31

[Close]
BLAST of MELO3C033117.jh1 vs. TAIR 10
Match: AT5G46750.1 (ARF-GAP domain 9 )

HSP 1 Score: 52.0 bits (123), Expect = 4.5e-07
Identity = 21/31 (67.74%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKICFDCNAK 32
          MA+++  DKNVVF++LK+KSENK+CFDC+AK
Sbjct: 1  MATENLTDKNVVFRKLKSKSENKVCFDCSAK 31

[Close]
BLAST of MELO3C033117.jh1 vs. TAIR 10
Match: AT2G35210.2 (root and pollen arfgap )

HSP 1 Score: 50.1 bits (118), Expect = 1.7e-06
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKICFDCNAK 32
          MAS++  DK  VFK+LKAKS+NKICFDCNAK
Sbjct: 1  MASENLNDKISVFKKLKAKSDNKICFDCNAK 31

[Close]
BLAST of MELO3C033117.jh1 vs. TAIR 10
Match: AT2G35210.1 (root and pollen arfgap )

HSP 1 Score: 50.1 bits (118), Expect = 1.7e-06
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 1  MASDSFIDKNVVFKRLKAKSENKICFDCNAK 32
          MAS++  DK  VFK+LKAKS+NKICFDCNAK
Sbjct: 1  MASENLNDKISVFKKLKAKSDNKICFDCNAK 31

[Close]
BLAST of MELO3C033117.jh1 vs. TAIR 10
Match: AT4G17890.1 (ARF-GAP domain 8 )

HSP 1 Score: 50.1 bits (118), Expect = 1.7e-06
Identity = 19/30 (63.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 2  ASDSFIDKNVVFKRLKAKSENKICFDCNAK 32
          ++D+  DKN+VF++LK+KSENK+CFDC+AK
Sbjct: 5  SADNLTDKNIVFRKLKSKSENKVCFDCSAK 34

[Close]
BLAST of MELO3C033117.jh1 vs. TAIR 10
Match: AT4G17890.2 (ARF-GAP domain 8 )

HSP 1 Score: 50.1 bits (118), Expect = 1.7e-06
Identity = 19/30 (63.33%), Postives = 28/30 (93.33%), Query Frame = 0 

Query: 2  ASDSFIDKNVVFKRLKAKSENKICFDCNAK 32
          ++D+  DKN+VF++LK+KSENK+CFDC+AK
Sbjct: 5  SADNLTDKNIVFRKLKSKSENKVCFDCSAK 34

The following BLAST results are available for this feature:
BLAST of MELO3C033117.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652650.16.53e-0893.55probable ADP-ribosylation factor GTPase-activating protein AGD9 [Cucumis sativus... [more]
XP_008465980.16.56e-0893.55PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD9 [Cucu... [more]
KAF3449442.11.22e-0790.32hypothetical protein FNV43_RR10170 [Rhamnella rubrinervis][more]
KHN42738.11.23e-0780.65ADP-ribosylation factor GTPase-activating protein AGD10 [Glycine soja][more]
XP_038886899.11.65e-0790.32probable ADP-ribosylation factor GTPase-activating protein AGD9 isoform X1 [Beni... [more]
BLAST of MELO3C033117.jh1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FIQ06.4e-0667.74Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis t... [more]
O821712.4e-0574.19ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana ... [more]
Q8H1002.4e-0563.33Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis t... [more]
BLAST of MELO3C033117.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LF233.16e-0893.55Arf-GAP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G902260 PE=... [more]
A0A1S3CQ593.18e-0893.55probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Cucumis melo ... [more]
A0A2N9GC555.17e-0880.65Arf-GAP domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24596 ... [more]
A0A0B2SD825.98e-0880.65ADP-ribosylation factor GTPase-activating protein AGD10 OS=Glycine soja OX=3848 ... [more]
A0A151RC721.67e-0777.42Putative ADP-ribosylation factor GTPase-activating protein AGD9 OS=Cajanus cajan... [more]
BLAST of MELO3C033117.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G46750.14.5e-0767.74ARF-GAP domain 9 [more]
AT2G35210.21.7e-0674.19root and pollen arfgap [more]
AT2G35210.11.7e-0674.19root and pollen arfgap [more]
AT4G17890.11.7e-0663.33ARF-GAP domain 8 [more]
AT4G17890.21.7e-0663.33ARF-GAP domain 8 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033117.jh1.t1MELO3C033117.jh1.t1mRNA