MELO3C033060 (gene) Melon (DHL92) v4

Overview
NameMELO3C033060
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionChloride channel protein
Locationchr08: 20037551 .. 20039876 (+)
RNA-Seq ExpressionMELO3C033060
SyntenyMELO3C033060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACACTCCCCTTTCCTTCTTCAAAATCTCTCCCCTCACGAACGATGAACAACGCACAACGAAAACCCTAACCTTAACCCTATTCTTCTCATCTCCACGTCGTTTCTTCTCGACGACGAAGACCCACGGCGAGGAGACCCATATCGTCGATGATGAGTTCTTGATCTTTCTTTTTTCTTTTCTTCTCCCTCTGTTTATCTCTTCCTCTGTGCACAGTCCCACAAATTACCTTAATAAATTCAAGAGGAAGTAGGGTTCTAAGAGACATATAAAGAGCACTGATTTCTTGTCTTCTTTGTCTCTCCCTTTCTCTCCCTAACTCAACAACGCCTTTGTCCATTCCCTAAGGTACCTAACTTAAAAACGCTTTTTAACTATTTTGTGATTCTTTAAAGGTATATTGATGGTTTTGTGAAATATATTATTGGCTATGTGATGAAGCATTTTGGTAGCTTACAATGTGTTTGATGAAATGTCTCAATGAAGCCTTTGGTTGATTTTTAATTGATTTTTGTTTGTTTGAATTAGGAAATCAAGGCCAAGGGAGATTTCATGGCTAAGGGAGGAAGCTTTGAGAAAAAGAGAATGAAAATGAATGGTTAGATTTTAAACTTTGATGATGTGTAGGGCCTTTAAGTATTTTCTAGAGTTTAGTTGTTACGGTCTTACATGTTTAATGTTAGGTTTTATTTCTAGTAGTGCAGGAATTTCAATCTCCTCTCTTATTGAAAAGAATATTTAGTCTTAGGAAGTATTTAGGATTGTTTCTCAAGGAATGAATTTTTGAATGAATCAAAAATTATTTGGATACATGGTTCTATATTCTGATATGGTTTCTTACATAGCACTTTAAGGTGCTTACATATTTTTTTAAAACATGAAAATTTTCAGAAGACTGTTGCCAAAGACACTCTCAAGGATGGCTTTCAATTTTAAAATTCAATCAACCAAAAAAGGAAAAGTGCCAACTTTTTTAATGTAATTAAAAAGGCTTCAATTTCACTCATTCCCTCGATGACTGTTCATGAAAAGGCGTGAAAGAACTGAGATCGTGTCTATATCTTATAAGCCCATGATATAGCATTGCATCTTCCCACTTCTTTTTCATTTTTCAACAACTTTTTGAGTATTTTCATTGGTTTCTCTTCTTCAGGTAAATGTTTTCTCTTTGGTATAACATTTTTTGGGTTTCGTATCTTTTTTAAAATTCAAAGTTTGATTGGAAAATTTTTTATAACGAAGAATTATTTATTTACTTTCAGATCTAGATGACACTCTTTATCCTTTTAACTCTGGATTGACAAAGAAAATCACCAACAAAATTCTAGGTTAGATGGAATTTCCTTTCCCCTTTTCCCTCTGGATTCAGAAACCTTTGGGGTTGATAGTGTTTAGAGAAATGAGACTCTTCGTATATCTATGATATTGTCCATTTTGAACTTGAGTTTGCATGAGGCTCTTCGTATATTTATGATATTGTCCATTTTGAACTTGAGTTTGCATGATGCTCTTCGTATATCTATGATATTGTCCATTTTGAACTTGAGTTTGCATGAATTTATCTTTTTAAAATCTTATCTTATGATCAGTACTCATTATGTTGGAGAAACTTTTAACTAGAAACATGGAGGACATCATGTGTTGGTGTATGTATTGAGGTTTTCTTTTGTGTTGGTGTATGTGTTGAAAATGTTCTGGTTTTCACAAATTTTCGTTATGTAGCTGAGATTCTAATGTCGAAGAATCGAAGATACAAAGAAACTATAGGATTTCTGTTCACGATGTCGAAAGTACTACAAGCTAGTGAATTATGTATGTTTGCTCGTGTTCGAGGATTTTACTGTTGAACTTTCAAGATTGAGTAAAATGTAGTTGTTGATATTTACTTTCAAATTTGACGTGTTTGATTATCTGAAATGTGGTCGTGATAATTATAGTTTTTGATTCTTTTTTTAGGATGGATTAAGCGAAATGTAGTTGATTGACATGTACTTTCAAATTGAATTTGCTTAATGATACAAATGGGTTTGAGGCATAATTTTAGTTTTTGATTGTTTAGGATGAGGAATGGTTTGTTTATTTGCCAAAATTTCAAATGGGTATGTGGGTCATCATGGTTGAATTTTTTACCTCTCATCATGTTTGTACTTCTCATGTCCAAGGTAGGTTAATAAATTGAAAATTGAAAATTTAACCGTTCAGCAAGTTTATTTCCACGTGAGAGTGGGTAAAGTATATAATCACTTCAGACTGTCGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCTGAATTGAAGGGTATTCCATTACTGGAATGA

mRNA sequence

ATGCACACTCCCCTTTCCTTCTTCAAAATCTCTCCCCTCACGAACGATGAACAACGCACAACGAAAACCCTAACCTTAACCCTATTCTTCTCATCTCCACGTCGTTTCTTCTCGACGACGAAGACCCACGGCGAGGAGACCCATATCGTCGATGATGAGTTCTTGATCTTTCTTTTTTCTTTTCTTCTCCCTCTGTTTATCTCTTCCTCTGTGCACAGTCCCACAAATTACCTTAATAAATTCAAGAGGAAGTATATTGATGGTTTTGTGAAATATATTATTGGCTATGTGATGAAGCATTTTGGTAGCTTACAATGTGAAATCAAGGCCAAGGGAGATTTCATGGCTAAGGGAGGAAGCTTTGAGAAAAAGAGAATGAAAATGAATGATCTAGATGACACTCTTTATCCTTTTAACTCTGGATTGACAAAGAAAATCACCAACAAAATTCTAGCTGAGATTCTAATGTCGAAGAATCGAAGATACAAAGAAACTATAGGATTTCTGTTCACGATGTCGAAAGATGGATTAAGCGAAATGATGAGGAATGGTTTGTTTATTTGCCAAAATTTCAAATGGGTATGTGGGTCATCATGGTTGAATTTTTTACCTCTCATCATGTTTGTACTTCTCATGTCCAAGACTGTCGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCTGAATTGAAGGGTATTCCATTACTGGAATGA

Coding sequence (CDS)

ATGCACACTCCCCTTTCCTTCTTCAAAATCTCTCCCCTCACGAACGATGAACAACGCACAACGAAAACCCTAACCTTAACCCTATTCTTCTCATCTCCACGTCGTTTCTTCTCGACGACGAAGACCCACGGCGAGGAGACCCATATCGTCGATGATGAGTTCTTGATCTTTCTTTTTTCTTTTCTTCTCCCTCTGTTTATCTCTTCCTCTGTGCACAGTCCCACAAATTACCTTAATAAATTCAAGAGGAAGTATATTGATGGTTTTGTGAAATATATTATTGGCTATGTGATGAAGCATTTTGGTAGCTTACAATGTGAAATCAAGGCCAAGGGAGATTTCATGGCTAAGGGAGGAAGCTTTGAGAAAAAGAGAATGAAAATGAATGATCTAGATGACACTCTTTATCCTTTTAACTCTGGATTGACAAAGAAAATCACCAACAAAATTCTAGCTGAGATTCTAATGTCGAAGAATCGAAGATACAAAGAAACTATAGGATTTCTGTTCACGATGTCGAAAGATGGATTAAGCGAAATGATGAGGAATGGTTTGTTTATTTGCCAAAATTTCAAATGGGTATGTGGGTCATCATGGTTGAATTTTTTACCTCTCATCATGTTTGTACTTCTCATGTCCAAGACTGTCGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCTGAATTGAAGGGTATTCCATTACTGGAATGA

Protein sequence

MHTPLSFFKISPLTNDEQRTTKTLTLTLFFSSPRRFFSTTKTHGEETHIVDDEFLIFLFSFLLPLFISSSVHSPTNYLNKFKRKYIDGFVKYIIGYVMKHFGSLQCEIKAKGDFMAKGGSFEKKRMKMNDLDDTLYPFNSGLTKKITNKILAEILMSKNRRYKETIGFLFTMSKDGLSEMMRNGLFICQNFKWVCGSSWLNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE
Homology
BLAST of MELO3C033060 vs. NCBI nr
Match: KAA0061703.1 (chloride channel protein CLC-d [Cucumis melo var. makuwa] >TYK21178.1 chloride channel protein CLC-d [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 5.9e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 197 SSWLNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           S+ L FLPLIM VLLMSK VGDAFNEGLYEEQA+LKGIPLLE
Sbjct: 532 SNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

BLAST of MELO3C033060 vs. NCBI nr
Match: XP_023548210.1 (chloride channel protein CLC-d isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.4 bits (176), Expect = 5.9e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 197 SSWLNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           S+ L FLPLIM VLLMSK VGDAFNEGLYEEQA+LKGIPLLE
Sbjct: 532 SNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

BLAST of MELO3C033060 vs. NCBI nr
Match: XP_022959117.1 (chloride channel protein CLC-d isoform X1 [Cucurbita moschata])

HSP 1 Score: 72.4 bits (176), Expect = 5.9e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 197 SSWLNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           S+ L FLPLIM VLLMSK VGDAFNEGLYEEQA+LKGIPLLE
Sbjct: 540 SNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 581

BLAST of MELO3C033060 vs. NCBI nr
Match: XP_023548208.1 (chloride channel protein CLC-d isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.4 bits (176), Expect = 5.9e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 197 SSWLNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           S+ L FLPLIM VLLMSK VGDAFNEGLYEEQA+LKGIPLLE
Sbjct: 540 SNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 581

BLAST of MELO3C033060 vs. NCBI nr
Match: XP_011657577.1 (chloride channel protein CLC-d [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 5.9e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 197 SSWLNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           S+ L FLPLIM VLLMSK VGDAFNEGLYEEQA+LKGIPLLE
Sbjct: 532 SNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

BLAST of MELO3C033060 vs. ExPASy Swiss-Prot
Match: P92943 (Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-09
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 0

Query: 200 LNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           L  LPLIM VLL+SK VGDAFNEGLYE QA LKGIPLLE
Sbjct: 537 LKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLE 575

BLAST of MELO3C033060 vs. ExPASy Swiss-Prot
Match: Q96282 (Chloride channel protein CLC-c OS=Arabidopsis thaliana OX=3702 GN=CLC-C PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 7.0e-05
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0

Query: 200 LNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           L  LPL+M VLL+SKTV D FN G+Y++   +KG+P +E
Sbjct: 549 LLMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYME 587

BLAST of MELO3C033060 vs. ExPASy Swiss-Prot
Match: P92941 (Chloride channel protein CLC-a OS=Arabidopsis thaliana OX=3702 GN=CLC-A PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 9.2e-05
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 0

Query: 200 LNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           L  LP+ MFVLL++KTVGD+FN  +YE    LKG+P LE
Sbjct: 539 LLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLE 577

BLAST of MELO3C033060 vs. ExPASy Swiss-Prot
Match: P92942 (Chloride channel protein CLC-b OS=Arabidopsis thaliana OX=3702 GN=CLC-B PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 6.0e-04
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 0

Query: 200 LNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           L  LP+ M VLL++KTVGD+FN  +Y+    LKG+P LE
Sbjct: 538 LLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLE 576

BLAST of MELO3C033060 vs. ExPASy TrEMBL
Match: A0A5D3DCE9 (Chloride channel protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00500 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 197 SSWLNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           S+ L FLPLIM VLLMSK VGDAFNEGLYEEQA+LKGIPLLE
Sbjct: 532 SNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

BLAST of MELO3C033060 vs. ExPASy TrEMBL
Match: A0A0A0KI42 (Chloride channel protein OS=Cucumis sativus OX=3659 GN=Csa_6G425060 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 197 SSWLNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           S+ L FLPLIM VLLMSK VGDAFNEGLYEEQA+LKGIPLLE
Sbjct: 532 SNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

BLAST of MELO3C033060 vs. ExPASy TrEMBL
Match: A0A6J1H3N7 (Chloride channel protein OS=Cucurbita moschata OX=3662 GN=LOC111460209 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 197 SSWLNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           S+ L FLPLIM VLLMSK VGDAFNEGLYEEQA+LKGIPLLE
Sbjct: 540 SNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 581

BLAST of MELO3C033060 vs. ExPASy TrEMBL
Match: A0A6J1H514 (Chloride channel protein OS=Cucurbita moschata OX=3662 GN=LOC111460209 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 197 SSWLNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           S+ L FLPLIM VLLMSK VGDAFNEGLYEEQA+LKGIPLLE
Sbjct: 532 SNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

BLAST of MELO3C033060 vs. ExPASy TrEMBL
Match: A0A1S3BMB3 (Chloride channel protein OS=Cucumis melo OX=3656 GN=LOC103491408 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-09
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0

Query: 197 SSWLNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           S+ L FLPLIM VLLMSK VGDAFNEGLYEEQA+LKGIPLLE
Sbjct: 532 SNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

BLAST of MELO3C033060 vs. TAIR 10
Match: AT5G26240.1 (chloride channel D )

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-10
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 0

Query: 200 LNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           L  LPLIM VLL+SK VGDAFNEGLYE QA LKGIPLLE
Sbjct: 537 LKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLE 575

BLAST of MELO3C033060 vs. TAIR 10
Match: AT5G49890.1 (chloride channel C )

HSP 1 Score: 49.3 bits (116), Expect = 5.0e-06
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0

Query: 200 LNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           L  LPL+M VLL+SKTV D FN G+Y++   +KG+P +E
Sbjct: 549 LLMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYME 587

BLAST of MELO3C033060 vs. TAIR 10
Match: AT5G40890.1 (chloride channel A )

HSP 1 Score: 48.9 bits (115), Expect = 6.5e-06
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 0

Query: 200 LNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           L  LP+ MFVLL++KTVGD+FN  +YE    LKG+P LE
Sbjct: 539 LLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLE 577

BLAST of MELO3C033060 vs. TAIR 10
Match: AT5G40890.2 (chloride channel A )

HSP 1 Score: 48.9 bits (115), Expect = 6.5e-06
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 0

Query: 200 LNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           L  LP+ MFVLL++KTVGD+FN  +YE    LKG+P LE
Sbjct: 407 LLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLE 445

BLAST of MELO3C033060 vs. TAIR 10
Match: AT3G27170.1 (chloride channel B )

HSP 1 Score: 46.2 bits (108), Expect = 4.2e-05
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 0

Query: 200 LNFLPLIMFVLLMSKTVGDAFNEGLYEEQAELKGIPLLE 239
           L  LP+ M VLL++KTVGD+FN  +Y+    LKG+P LE
Sbjct: 538 LLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLE 576

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0061703.15.9e-0985.71chloride channel protein CLC-d [Cucumis melo var. makuwa] >TYK21178.1 chloride c... [more]
XP_023548210.15.9e-0985.71chloride channel protein CLC-d isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022959117.15.9e-0985.71chloride channel protein CLC-d isoform X1 [Cucurbita moschata][more]
XP_023548208.15.9e-0985.71chloride channel protein CLC-d isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_011657577.15.9e-0985.71chloride channel protein CLC-d [Cucumis sativus][more]
Match NameE-valueIdentityDescription
P929431.6e-0982.05Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=... [more]
Q962827.0e-0553.85Chloride channel protein CLC-c OS=Arabidopsis thaliana OX=3702 GN=CLC-C PE=1 SV=... [more]
P929419.2e-0558.97Chloride channel protein CLC-a OS=Arabidopsis thaliana OX=3702 GN=CLC-A PE=1 SV=... [more]
P929426.0e-0453.85Chloride channel protein CLC-b OS=Arabidopsis thaliana OX=3702 GN=CLC-B PE=1 SV=... [more]
Match NameE-valueIdentityDescription
A0A5D3DCE92.9e-0985.71Chloride channel protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A0A0KI422.9e-0985.71Chloride channel protein OS=Cucumis sativus OX=3659 GN=Csa_6G425060 PE=3 SV=1[more]
A0A6J1H3N72.9e-0985.71Chloride channel protein OS=Cucurbita moschata OX=3662 GN=LOC111460209 PE=3 SV=1[more]
A0A6J1H5142.9e-0985.71Chloride channel protein OS=Cucurbita moschata OX=3662 GN=LOC111460209 PE=3 SV=1[more]
A0A1S3BMB32.9e-0985.71Chloride channel protein OS=Cucumis melo OX=3656 GN=LOC103491408 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G26240.11.2e-1082.05chloride channel D [more]
AT5G49890.15.0e-0653.85chloride channel C [more]
AT5G40890.16.5e-0658.97chloride channel A [more]
AT5G40890.26.5e-0658.97chloride channel A [more]
AT3G27170.14.2e-0553.85chloride channel B [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033060.1MELO3C033060.1mRNA