MELO3C033055 (gene) Melon (DHL92) v4

Overview
NameMELO3C033055
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionATP-dependent Clp protease ATP-binding subunit ClpC
Locationchr05: 25605852 .. 25606035 (+)
RNA-Seq ExpressionMELO3C033055
SyntenyMELO3C033055
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATCACCTTGGATATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAACAAAGTGATGAAATGGGGCTGCAAAAGGAGTTATTGATGCAGCAAACATATTAAAACCTGCCCTTGCAAGGGGTGAACTGCAGGTATTCTCG

mRNA sequence

TCATCACCTTGGATATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAACAAAGTGATGAAATGGGGCTGCAAAAGGAGTTATTGATGCAGCAAACATATTAAAACCTGCCCTTGCAAGGGGTGAACTGCAGGTATTCTCG

Coding sequence (CDS)

ATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAACAAAGTGATGAAATGGGGCTGCAAAAGGAGTTATTGATGCAGCAAACATATTAA

Protein sequence

MGLLVAGTKYRGEFEERLKKLMEEIKQSDEMGLQKELLMQQTY
Homology
[Close]
BLAST of MELO3C033055 vs. NCBI nr
Match: KAG6746234.1 (hypothetical protein POTOM_050764 [Populus tomentosa])

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEMGL 34
           MGLLVAGTKYRGEFEERLKKLMEEIKQSDE+ L
Sbjct: 333 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIML 365

[Close]
BLAST of MELO3C033055 vs. NCBI nr
Match: XP_038986956.1 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic isoform X2 [Phoenix dactylifera])

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEMGL 34
           MGLLVAGTKYRGEFEERLKKLMEEIKQSDE+ L
Sbjct: 336 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIML 368

[Close]
BLAST of MELO3C033055 vs. NCBI nr
Match: XP_031396250.1 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-like isoform X3 [Punica granatum] >XP_031396251.1 ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-like isoform X3 [Punica granatum] >XP_031396252.1 ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-like isoform X3 [Punica granatum])

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEMGL 34
           MGLLVAGTKYRGEFEERLKKLMEEIKQSDE+ L
Sbjct: 359 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIML 391

[Close]
BLAST of MELO3C033055 vs. NCBI nr
Match: XP_038986955.1 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic isoform X1 [Phoenix dactylifera])

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEMGL 34
           MGLLVAGTKYRGEFEERLKKLMEEIKQSDE+ L
Sbjct: 336 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIML 368

[Close]
BLAST of MELO3C033055 vs. NCBI nr
Match: KAG6747268.1 (hypothetical protein POTOM_049664 [Populus tomentosa])

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEMGL 34
           MGLLVAGTKYRGEFEERLKKLMEEIKQSDE+ L
Sbjct: 333 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIML 365

[Close]
BLAST of MELO3C033055 vs. ExPASy Swiss-Prot
Match: P31541 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CD4A PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.5e-09
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEM 32
           MGLLVAGTKYRGEFEERLKKLMEEIKQSDE+
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEI 368

[Close]
BLAST of MELO3C033055 vs. ExPASy Swiss-Prot
Match: P31542 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CD4B PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.5e-09
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEM 32
           MGLLVAGTKYRGEFEERLKKLMEEIKQSDE+
Sbjct: 336 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEI 366

[Close]
BLAST of MELO3C033055 vs. ExPASy Swiss-Prot
Match: Q2QVG9 (Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLPC2 PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 5.5e-09
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEM 32
           MGLLVAGTKYRGEFEERLKKLMEEIKQSDE+
Sbjct: 333 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEI 363

[Close]
BLAST of MELO3C033055 vs. ExPASy Swiss-Prot
Match: Q9FI56 (Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPC1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-08
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEM 32
           MGLLVAGTKYRGEFEERLKKLMEEI+QSDE+
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEI 368

[Close]
BLAST of MELO3C033055 vs. ExPASy Swiss-Prot
Match: Q9SXJ7 (Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPC2 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-08
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEM 32
           MGLLVAGTKYRGEFEERLKKLMEEI+QSDE+
Sbjct: 359 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEI 389

[Close]
BLAST of MELO3C033055 vs. ExPASy TrEMBL
Match: A0A6P8DSM6 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-like isoform X3 OS=Punica granatum OX=22663 GN=LOC116207448 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEMGL 34
           MGLLVAGTKYRGEFEERLKKLMEEIKQSDE+ L
Sbjct: 359 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIML 391

[Close]
BLAST of MELO3C033055 vs. ExPASy TrEMBL
Match: A0A6A2XXN0 (Chaperone protein ClpC1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112988pilonHSYRG00201 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEMGL 34
           MGLLVAGTKYRGEFEERLKKLMEEIKQSDE+ L
Sbjct: 333 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIML 365

[Close]
BLAST of MELO3C033055 vs. ExPASy TrEMBL
Match: A9PHQ2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEMGL 34
           MGLLVAGTKYRGEFEERLKKLMEEIKQSDE+ L
Sbjct: 247 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIML 279

[Close]
BLAST of MELO3C033055 vs. ExPASy TrEMBL
Match: A0A2K1XL42 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G105100 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEMGL 34
           MGLLVAGTKYRGEFEERLKKLMEEIKQSDE+ L
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIML 370

[Close]
BLAST of MELO3C033055 vs. ExPASy TrEMBL
Match: A0A6M2F4K4 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEMGL 34
           MGLLVAGTKYRGEFEERLKKLMEEIKQSDE+ L
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIML 370

[Close]
BLAST of MELO3C033055 vs. TAIR 10
Match: AT3G48870.1 (Clp ATPase )

HSP 1 Score: 59.3 bits (142), Expect = 8.7e-10
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEM 32
           MGLLVAGTKYRGEFEERLKKLMEEI+QSDE+
Sbjct: 359 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEI 389

[Close]
BLAST of MELO3C033055 vs. TAIR 10
Match: AT3G48870.2 (Clp ATPase )

HSP 1 Score: 59.3 bits (142), Expect = 8.7e-10
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEM 32
           MGLLVAGTKYRGEFEERLKKLMEEI+QSDE+
Sbjct: 328 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEI 358

[Close]
BLAST of MELO3C033055 vs. TAIR 10
Match: AT5G50920.1 (CLPC homologue 1 )

HSP 1 Score: 59.3 bits (142), Expect = 8.7e-10
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDEM 32
           MGLLVAGTKYRGEFEERLKKLMEEI+QSDE+
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEI 368

[Close]
BLAST of MELO3C033055 vs. TAIR 10
Match: AT1G74310.1 (heat shock protein 101 )

HSP 1 Score: 42.4 bits (98), Expect = 1.1e-04
Identity = 18/29 (62.07%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD 30
           MG LVAG KYRGEFEERLK +++E++ ++
Sbjct: 243 MGALVAGAKYRGEFEERLKSVLKEVEDAE 271

[Close]
BLAST of MELO3C033055 vs. TAIR 10
Match: AT5G15450.1 (casein lytic proteinase B3 )

HSP 1 Score: 40.8 bits (94), Expect = 3.2e-04
Identity = 17/29 (58.62%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD 30
           MG L+AG KYRGEFE+RLK +++E+  S+
Sbjct: 318 MGALIAGAKYRGEFEDRLKAVLKEVTDSE 346

The following BLAST results are available for this feature:
BLAST of MELO3C033055 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6746234.13.2e-0693.94hypothetical protein POTOM_050764 [Populus tomentosa][more]
XP_038986956.13.2e-0693.94ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic ... [more]
XP_031396250.13.2e-0693.94ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-... [more]
XP_038986955.13.2e-0693.94ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic ... [more]
KAG6747268.13.2e-0693.94hypothetical protein POTOM_049664 [Populus tomentosa][more]
BLAST of MELO3C033055 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P315415.5e-0996.77ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic ... [more]
P315425.5e-0996.77ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic ... [more]
Q2QVG95.5e-0996.77Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ... [more]
Q9FI561.2e-0893.55Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPC1 ... [more]
Q9SXJ71.2e-0893.55Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPC2 ... [more]
BLAST of MELO3C033055 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6P8DSM61.6e-0693.94ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic-... [more]
A0A6A2XXN01.6e-0693.94Chaperone protein ClpC1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112988pilon... [more]
A9PHQ21.6e-0693.94Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1[more]
A0A2K1XL421.6e-0693.94Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G105100 PE=3 ... [more]
A0A6M2F4K41.6e-0693.94Uncharacterized protein OS=Populus davidiana OX=266767 PE=3 SV=1[more]
BLAST of MELO3C033055 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G48870.18.7e-1093.55Clp ATPase [more]
AT3G48870.28.7e-1093.55Clp ATPase [more]
AT5G50920.18.7e-1093.55CLPC homologue 1 [more]
AT1G74310.11.1e-0462.07heat shock protein 101 [more]
AT5G15450.13.2e-0458.62casein lytic proteinase B3 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 11..31
NoneNo IPR availablePANTHERPTHR11638ATP-DEPENDENT CLP PROTEASEcoord: 1..33
NoneNo IPR availablePANTHERPTHR11638:SF169ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTICcoord: 1..33
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 1..36
e-value: 8.6E-7
score: 30.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033055.1MELO3C033055.1mRNA