MELO3C033039.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C033039.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPentatricopeptide repeat-containing protein
Locationchr08: 6383871 .. 6386558 (-)
RNA-Seq ExpressionMELO3C033039.jh1
SyntenyMELO3C033039.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAATACATTTGCTCCACAGATAGTCCTCACTGGTACACACTTGCGATCTGCAATCGATGCGTGTATGAAATCAGCAGTGGATATAAAGACCAAGTTGGTAAGTATTGCATATGGGTATGTGATTATATTTTGGTTGGTAAGGTAACAATATCTTTAAAAATAACTGGCAAAAATTGAAAGTTTTTGCCAAAGTATCTTCATCGGATCACAAAGCCTGACAAAAACTACACTATTATTTGGTTTGGTTCATTGCTTTGTAAAACCAATCTTTTTAAAAAAGACATTTGTAAGAATTATGGTGGAATTAAGGTTCATTTTGTGTAACTATTAATAACAAATATCACTCAATTATTTTATCTTTTAAAGACAGATCAATTTGTAGAAACAAACAAAGCTATAGATTCTTGGTGATCTTTAGGCCAATTAACATATGATTTCTATAATCTCTAGTGGTCAAATGGAATTGATTCATGTGGGATCTTTTTTCTTTCTTTCAAAAATTGGGAGACAGTCATTCATTGCCAGGCTTTAATGTTGAGAAACCACATTGCAAAACCAAGCCATATGGTTTGATAAATAGACTAATAATTGTTGTTATTATGATTATTAATATTATCATTGAGTACTAGTGGTTTGAATATTTGTAAGGAGACAAAGAGGCAATGGATGGTGTTTAATTAAATCTTAGGTTATAATGTGAATGAATCATTATTTTTGGTACATTTGTACGTTTGTCACTCTCTCTATTATGGATCCGTACGTTTAAATGAAATCTTTTGGATGGTTGACCTAATCTTGTGGCTACAAGATTACATTAAGAATTTGCTCACATGCTTATGCCCCACATCCATTTATTCATCCTCTCAATATTTGGTGACTTGATGACCTCAATGTTCAAACGCTTTCTCCTCTTGATCCAAATGTAATATTAGCACTTGTATGCCGGTGTTTTGTTGATCTAAAAGTTAACATGTTTTAAACCCTACAAGTGCAAATATTAGATTTTTTTTAGATAGTGTGTCAAATGTTTTTTGCCCTCTATCATATCATTACAACGTTCAAATTTTATGATACTTAAGATTAACAAATAGATCGATACGAAACACAGTGGTTAAGTGCTCCTCTTGGCTCCTATGTGCATCAACTCTTGGTCTTGATCCAAATGTAACTTCAGTGGTCAAACATTAGTTTATAATGGTTGTTTCTTACTCATATTTTTTTCATCTTGCAAAATTGAATTACCTTAAGAAATGTTAAGATTTTTACCTTGGTAAGTTTCTTTTTGTTAATTATACACGTAGAGTGTAAAGTTCTAATAGAGGAAAAATAAATTATTCGTTAGAAACTACAGCAATGACGTAAAATCGAAAATCGTTCATTTTGTTGTTGGGATGTATAGTAATACTAAATTAAAATTCATGAAACGGAAGAACAACGGATATGATGAAATTACTAATATATTTGAGAAAGTTTTCTTAATGCAATAGAAACAGGATGAATCAAATGGATGTTAATACGTACCGACTTTACACCAAAAGTTGTTTTGATTCATAAATGACACTCTCAGTTCAAGTGGAATTCTGACAAAGAATTTTGTATTCTTGTTCGTTTTTTGAGTGAACTAATAATAGAGTCATAGATTGATGATGCTTACGCTACTCTTATCCTTGCAGGCAATGGATTTTCATTTCATTCAAATTCATGCACCTTACGGTGAAGGTGATTGCTGTGTTGTTTTGTTCAGTGCCCTTCACATGTTCGACAAAACGCCTGACTTAACCTCTTCTCGTGTCTCCCTCATGGCGTCTCTTAAGGACTAGGGCCTCGTTGTCTTCTCTCAATTTGTGATCATGTGGTTTGTTTTTTCTCTTCCTTGGTCCATCCCATGAACTTAAAATCTCAAACCCAGTTTCTCCTTTTAGCTATTTCACTTCGTAATGATGGGAAATTTTAGTTTGTTGTTCCTCTTAAACTGAAAATGATGGTGTTACTCTGTTAGATAGAGCAAGATCATGCAGTAGGCTACTTGATTCTTGTGTTTGAGTTTCCGTAGATTTAGACAAAAAGGCAAATAAAAGAATGGCATTTTTCTGACAGAATGATTAATGCACATTGTTTTGGATTTTTCATTCAACTTTTTGCCTTGTTCTTTTCATCTAATTAGGTATGATCGTCTTTTTACTCAAATTTCTCTTCCCCCCATTATGTTAGCCGCATGCCCCGCCCTTTGTCTGTTGCCGCTGCATTAGAAAGATTACTATAATCTTGGCTATGGGAGTAACAATGTTTGCTCATTGCAAGCCTAGATTCATGGCTACAATCATTAACAAAACTATCTTTTAAGAGGGGTTAGGCACTTTTTATCTCTATATATATTCACATCCCTCTTGATGGGTGGAGACAAAACATGGGTCGGGAATATTTAGGGTTGAAATTAGCTGATTCTCTTTTTGCTCACATGATTAGTCATTTGATTAAACCTTAAATTATGTTGGGTTTAGGCCCAGATGGTGAAACCCCAATTATTGAGGAGGCAAGGTGGCATTGCTATCATTATGGCCTGCAACTATGCCAACATGTTCAAATACTTTATTACTCTATTTTGTTGTCAGAGCTTGATGTTGGCCAATCGGTGGAGCATATGATTAAAAGATTTGACTTAGATGCTCAGATTGTAGGGTGA

mRNA sequence

ATGTGCAATACATTTGCTCCACAGATAGTCCTCACTGGTACACACTTGCGATCTGCAATCGATGCGTGTATGAAATCAGCAGTGGATATAAAGACCAAGTTGAGTCATAGATTGATGATGCTTACGCTACTCTTATCCTTGCAGGCAATGGATTTTCATTTCATTCAAATTCATGCACCTTACGGTGAAGAGCTTGATGTTGGCCAATCGGTGGAGCATATGATTAAAAGATTTGACTTAGATGCTCAGATTGTAGGGTGA

Coding sequence (CDS)

ATGTGCAATACATTTGCTCCACAGATAGTCCTCACTGGTACACACTTGCGATCTGCAATCGATGCGTGTATGAAATCAGCAGTGGATATAAAGACCAAGTTGAGTCATAGATTGATGATGCTTACGCTACTCTTATCCTTGCAGGCAATGGATTTTCATTTCATTCAAATTCATGCACCTTACGGTGAAGAGCTTGATGTTGGCCAATCGGTGGAGCATATGATTAAAAGATTTGACTTAGATGCTCAGATTGTAGGGTGA

Protein sequence

MCNTFAPQIVLTGTHLRSAIDACMKSAVDIKTKLSHRLMMLTLLLSLQAMDFHFIQIHAPYGEELDVGQSVEHMIKRFDLDAQIVG
Homology
[Close]
BLAST of MELO3C033039.jh1 vs. NCBI nr
Match: KAA0025621.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12496.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 4.79e-15
Identity = 42/56 (75.00%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 8   QIVLTGTHLRSAIDACMKSAVDIKTKLSHRLMMLTLLLSLQAMDFHFIQIHAPYGE 63
           QIVLTGTHLRSAIDACMKSAVDIKTKL              AMDFHFIQIHAPYGE
Sbjct: 445 QIVLTGTHLRSAIDACMKSAVDIKTKL--------------AMDFHFIQIHAPYGE 486

[Close]
BLAST of MELO3C033039.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SN01 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00740 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.32e-15
Identity = 42/56 (75.00%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 8   QIVLTGTHLRSAIDACMKSAVDIKTKLSHRLMMLTLLLSLQAMDFHFIQIHAPYGE 63
           QIVLTGTHLRSAIDACMKSAVDIKTKL              AMDFHFIQIHAPYGE
Sbjct: 445 QIVLTGTHLRSAIDACMKSAVDIKTKL--------------AMDFHFIQIHAPYGE 486

The following BLAST results are available for this feature:
BLAST of MELO3C033039.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0025621.14.79e-1575.00pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12496... [more]
BLAST of MELO3C033039.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C033039.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SN012.32e-1575.00Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of MELO3C033039.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033039.jh1.t1MELO3C033039.jh1.t1mRNA