MELO3C033016.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C033016.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr08: 15754898 .. 15755837 (-)
RNA-Seq Expression	MELO3C033016.jh1
Synteny	MELO3C033016.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGTTCGTCACGAGCATCGAAACATACATGGACTAAAGAGGAAGAAGCAAAACTTGTTGAGTGCTTAGTGGAATTAGTTTCAGCTGGGGGATGGAGGTCCAATAATGGGACATTTCGACATGGGTACTTGGCCCAATTACAACGAATGATGGTAAAGAAGTTATCCGACACTAATATTCAAGGATCGTTGCCAATGGATTGTCGTGTGAAATCTCTTAAAAAACACCTACCAAGCAATTTCAGAATGAGGGGGCCATCATGTAGTGGCTTTGGATGGAATGAAAAATTTCAATGCATCATCGCAGAACGAGATTTGTTTGATAATTGGGTAAAGGTATTAATTTCATAATACAATTGTACATACTTTTTATAATCACAATCGTCAACTAATATGCTTAAATTACGTTTCTACAGAGTCATCCTACAGCCGAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTGTCCTATGTCTTCGACAAAGATCGAGCAACGGAAGCACGTTTAGAGACCTTTGCTGATGTAGGATCTAATGTGCTGAACATGTTTAATGACGGTGTTCCCCTCGGTGATTCATATGATCAAGACATTCCGGCGATGTATAGTCAAGGAGTGCATATATCACCAGATTAGATGTTTGGAATACGTGCAGGTCAACCAAGTGAGAGAAGAAATTATTCAAGTGGAAGTAAGAGGAAATGAGGTAGCGAAATTATGAAATGGTAGAGGATTGGAAATGATCAGAAGTGTGATGGAATTTGGAAATAATCAATTAAAGGCAATTGCATATTGGCCAAAAGAGAAGCGTGCAACGGAGGTCGAATTGCGTGTTGAAGTTGTGAAATAGCTGCAAGATATCCCTGAACTACGAAGCCAAGTTAGGGCAAAACTTATGCAAACCCTATTCCGTAGTGTGGAGGCCATTGTGG

mRNA sequence

ATGACAAGTTCGTCACGAGCATCGAAACATACATGGACTAAAGAGGAAGAAGCAAAACTTGTTGAGTGCTTAGTGGAATTAGTTTCAGCTGGGGGATGGAGGTCCAATAATGGGACATTTCGACATGGGTACTTGGCCCAATTACAACGAATGATGGTAAAGAAGTTATCCGACACTAATATTCAAGGATCGTTGCCAATGGATTGTCGTGTGAAATCTCTTAAAAAACACCTACCAAGCAATTTCAGAATGAGGGGGCCATCATGTAGTGGCTTTGGATGGAATGAAAAATTTCAATGCATCATCGCAGAACGAGATTTGTTTGATAATTGGGTAAAGAGTCATCCTACAGCCGAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTGTCCTATGTCTTCGACAAAGATCGAGCAACGGAAGCACGTTTAGAGACCTTTGCTGATGTAGGATCTAATGTGCTGAACATGTTTAATGACGGTGTTCCCCTCGGTGATTCATATGATCAAGACATTCCGGCGATGTATAGTCAAGGAGTGCATATATCACCAGATTAGATGTTTGGAATACGTGCAGGTCAACCAAGTGAGAGAAGAAATTATTCAAGTGGAAGTAAGAGGAAATGAGGTAGCGAAATTATGAAATGGTAGAGGATTGGAAATGATCAGAAGTGTGATGGAATTTGGAAATAATCAATTAAAGGCAATTGCATATTGGCCAAAAGAGAAGCGTGCAACGGAGGTCGAATTGCGTGTTGAAGTTGTGAAATAGCTGCAAGATATCCCTGAACTACGAAGCCAAGTTAGGGCAAAACTTATGCAAACCCTATTCCGTAGTGTGGAGGCCATTGTGG

Coding sequence (CDS)

ATGACAAGTTCGTCACGAGCATCGAAACATACATGGACTAAAGAGGAAGAAGCAAAACTTGTTGAGTGCTTAGTGGAATTAGTTTCAGCTGGGGGATGGAGGTCCAATAATGGGACATTTCGACATGGGTACTTGGCCCAATTACAACGAATGATGGTAAAGAAGTTATCCGACACTAATATTCAAGGATCGTTGCCAATGGATTGTCGTGTGAAATCTCTTAAAAAACACCTACCAAGCAATTTCAGAATGAGGGGGCCATCATGTAGTGGCTTTGGATGGAATGAAAAATTTCAATGCATCATCGCAGAACGAGATTTGTTTGATAATTGGGTAAAGAGTCATCCTACAGCCGAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTGTCCTATGTCTTCGACAAAGATCGAGCAACGGAAGCACGTTTAGAGACCTTTGCTGATGTAGGATCTAATGTGCTGAACATGTTTAATGACGGTGTTCCCCTCGGTGATTCATATGATCAAGACATTCCGGCGATGTATAGTCAAGGAGTGCATATATCACCAGATTAG

Protein sequence

MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTNIQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEGLLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQGVHISPD

Homology

[Close]

BLAST of MELO3C033016.jh1 vs. NCBI nr
Match: KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 393 bits (1009), Expect = 1.57e-135
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 60
           MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN
Sbjct: 172 MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 231

Query: 61  IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG 120
           IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG
Sbjct: 232 IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG 291

Query: 121 LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ 180
           LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ
Sbjct: 292 LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ 351

Query: 181 GVHISPD 187
           GVHISPD
Sbjct: 352 GVHISPD 358

[Close]

BLAST of MELO3C033016.jh1 vs. NCBI nr
Match: TYK19779.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 375 bits (962), Expect = 1.01e-125
Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 60
           MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFR GYLAQLQRMMVKKLSDTN
Sbjct: 172 MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRLGYLAQLQRMMVKKLSDTN 231

Query: 61  IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG 120
           IQGSLPMDCRVKSLKKHLPSNFR+RGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG
Sbjct: 232 IQGSLPMDCRVKSLKKHLPSNFRIRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG 291

Query: 121 LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ 180
           LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ
Sbjct: 292 LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ 351

[Close]

BLAST of MELO3C033016.jh1 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 306 bits (783), Expect = 6.21e-102
Identity = 145/187 (77.54%), Postives = 160/187 (85.56%), Query Frame = 0


Query: 1   MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 60
           M S SRA KHTWTKEEE K VECLVELVS+GGWRS+NGTF+ GYLAQLQRMM +KL  TN
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG 120
           IQ S  +DC VKSLKK   +   MRGPSCSGFGWNE+FQCIIAERDLFD+W+KSHP A+G
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ 180
           LLHKSFPYYDDLSYVF KDRAT AR ETF +VGSNV NMFND +PLGDS+D+DIP MYSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180

Query: 181 GVHISPD 187
           GVH+SPD
Sbjct: 181 GVHMSPD 187

[Close]

BLAST of MELO3C033016.jh1 vs. NCBI nr
Match: KAA0064022.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 238 bits (606), Expect = 4.42e-75
Identity = 111/187 (59.36%), Postives = 144/187 (77.01%), Query Frame = 0


Query: 1   MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 60
           M++S+RA +H WT+EEE  LVECL+ELVS GGW+S+NGTFR GYLAQL RMM KKL    
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60

Query: 61  IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG 120
           ++ +  +DCR+K+LK+   +   MRGP+CSGFGWN++ +CI+AE++LFDNWV+SHP A+G
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ 180
           LL+KSFPYYD+L+YVF +DRAT    ETFADVGSN      D   +GD  ++D P +YSQ
Sbjct: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDG-NEDFPPVYSQ 180

Query: 181 GVHISPD 187
           GV IS D
Sbjct: 181 GVDISQD 186

[Close]

BLAST of MELO3C033016.jh1 vs. NCBI nr
Match: KAA0066208.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 236 bits (603), Expect = 1.26e-74
Identity = 111/187 (59.36%), Postives = 144/187 (77.01%), Query Frame = 0


Query: 1   MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 60
           M++S+RAS+H WT+EEE  LVECL+ELVS GGW+S+NGTFR GYLAQL RMM +KL    
Sbjct: 1   MSTSNRASRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG 120
           ++ +  +DCR+K+LK+   +   MRGP+CSGFGWN++ +CIIAE++LFDNWV+SHP A+G
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 120

Query: 121 LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ 180
           LL+K FPYYD+L+YVF +DRAT    ETFADVGSN      D   +GD  ++D P +YSQ
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDG-NEDFPPVYSQ 180

Query: 181 GVHISPD 187
           GV IS D
Sbjct: 181 GVDISQD 186

[Close]

BLAST of MELO3C033016.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)

HSP 1 Score: 393 bits (1009), Expect = 7.58e-136
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 60
           MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN
Sbjct: 172 MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 231

Query: 61  IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG 120
           IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG
Sbjct: 232 IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG 291

Query: 121 LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ 180
           LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ
Sbjct: 292 LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ 351

Query: 181 GVHISPD 187
           GVHISPD
Sbjct: 352 GVHISPD 358

[Close]

BLAST of MELO3C033016.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D8J6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00030 PE=4 SV=1)

HSP 1 Score: 375 bits (962), Expect = 4.91e-126
Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 60
           MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFR GYLAQLQRMMVKKLSDTN
Sbjct: 172 MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRLGYLAQLQRMMVKKLSDTN 231

Query: 61  IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG 120
           IQGSLPMDCRVKSLKKHLPSNFR+RGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG
Sbjct: 232 IQGSLPMDCRVKSLKKHLPSNFRIRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG 291

Query: 121 LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ 180
           LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ
Sbjct: 292 LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ 351

[Close]

BLAST of MELO3C033016.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 306 bits (783), Expect = 3.01e-102
Identity = 145/187 (77.54%), Postives = 160/187 (85.56%), Query Frame = 0


Query: 1   MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 60
           M S SRA KHTWTKEEE K VECLVELVS+GGWRS+NGTF+ GYLAQLQRMM +KL  TN
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG 120
           IQ S  +DC VKSLKK   +   MRGPSCSGFGWNE+FQCIIAERDLFD+W+KSHP A+G
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ 180
           LLHKSFPYYDDLSYVF KDRAT AR ETF +VGSNV NMFND +PLGDS+D+DIP MYSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180

Query: 181 GVHISPD 187
           GVH+SPD
Sbjct: 181 GVHMSPD 187

[Close]

BLAST of MELO3C033016.jh1 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 306 bits (783), Expect = 3.01e-102
Identity = 145/187 (77.54%), Postives = 160/187 (85.56%), Query Frame = 0


Query: 1   MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 60
           M S SRA KHTWTKEEE K VECLVELVS+GGWRS+NGTF+ GYLAQLQRMM +KL  TN
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG 120
           IQ S  +DC VKSLKK   +   MRGPSCSGFGWNE+FQCIIAERDLFD+W+KSHP A+G
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ 180
           LLHKSFPYYDDLSYVF KDRAT AR ETF +VGSNV NMFND +PLGDS+D+DIP MYSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180

Query: 181 GVHISPD 187
           GVH+SPD
Sbjct: 181 GVHMSPD 187

[Close]

BLAST of MELO3C033016.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V6Q9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00200 PE=4 SV=1)

HSP 1 Score: 238 bits (606), Expect = 2.14e-75
Identity = 111/187 (59.36%), Postives = 144/187 (77.01%), Query Frame = 0


Query: 1   MTSSSRASKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRHGYLAQLQRMMVKKLSDTN 60
           M++S+RA +H WT+EEE  LVECL+ELVS GGW+S+NGTFR GYLAQL RMM KKL    
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60

Query: 61  IQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNWVKSHPTAEG 120
           ++ +  +DCR+K+LK+   +   MRGP+CSGFGWN++ +CI+AE++LFDNWV+SHP A+G
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYDQDIPAMYSQ 180
           LL+KSFPYYD+L+YVF +DRAT    ETFADVGSN      D   +GD  ++D P +YSQ
Sbjct: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDG-NEDFPPVYSQ 180

Query: 181 GVHISPD 187
           GV IS D
Sbjct: 181 GVDISQD 186

[Close]

BLAST of MELO3C033016.jh1 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 8.8e-06
Identity = 21/73 (28.77%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 91  GFGWNEKFQCIIAERDLFDNWVKSHPTAEGLLHKSFPYYDDLSYVFDKDRATEARLETFA 150
           GF W++  Q ++A+  ++D ++K HP +     KS P Y DL  V+    +     E+ +
Sbjct: 88  GFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKDLCLVYSDGMSEHKAEESIS 147

Query: 151 DVGSNVLNMFNDG 164
           +  S  L   +DG
Sbjct: 148 EGESKTLIQEDDG 160

[Close]

BLAST of MELO3C033016.jh1 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 48.1 bits (113), Expect = 8.8e-06
Identity = 21/73 (28.77%), Postives = 37/73 (50.68%), Query Frame = 0


Query: 91  GFGWNEKFQCIIAERDLFDNWVKSHPTAEGLLHKSFPYYDDLSYVFDKDRATEARLETFA 150
           GF W++  Q ++A+  ++D ++K HP +     KS P Y DL  V+    +     E+ +
Sbjct: 88  GFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKDLCLVYSDGMSEHKAEESIS 147

Query: 151 DVGSNVLNMFNDG 164
           +  S  L   +DG
Sbjct: 148 EGESKTLIQEDDG 160

[Close]

BLAST of MELO3C033016.jh1 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 4.3e-05
Identity = 15/50 (30.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 90  SGFGWNEKFQCIIAERDLFDNWVKSHPTAEGLLHKSFPYYDDLSYVFDKD 140
           +GF W+ +   +IA+ D+++ ++++HP A     K+ P Y +L ++F K+
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKE 448

The following BLAST results are available for this feature:

BLAST of MELO3C033016.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043564.1	1.57e-135	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK19779.1	1.01e-125	98.90	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008441954.1	6.21e-102	77.54	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0064022.1	4.42e-75	59.36	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066208.1	1.26e-74	59.36	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033016.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033016.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TJS2	7.58e-136	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D8J6	4.91e-126	98.90	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U0H7	3.01e-102	77.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	3.01e-102	77.54	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5A7V6Q9	2.14e-75	59.36	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C033016.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02210.1	8.8e-06	28.77	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	8.8e-06	28.77	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.2	4.3e-05	30.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 3..155
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 3..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033016.jh1.t1	MELO3C033016.jh1.t1	mRNA