MELO3C033006.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C033006.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionProtein FAR1-RELATED SEQUENCE 4
Locationchr08: 14691098 .. 14691666 (-)
RNA-Seq ExpressionMELO3C033006.jh1
SyntenyMELO3C033006.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCTACTGATTATTCCATTCCAAAAGAGATTGTGCATAAGGCTCATACAAATCTTGGAGTTAATATAAGTTATTAGAAAGCTTGGAGGTCAAAAGAAGACATAGTAAAGATATTAAAAGGTGACACAATTGAATCGTATATGTTGATTCCAAGCTTCTTTGATAAATTGGTTGAATCTAACCTAGGTATGATCTGTTTCATATATCATATTTAAATTCATTTGCAGATAGATGATGATAGACAAATGTCATAGTCTATCTAGATTGACAAATATCACAAGCTATCTAGATAGAAAAATATTAGCATTTATCACAGCCTATCTAGATAGACAAATATTAGCATTTATCACAGTCTATCTAGATAGACACATATTAGCATCTATCACAGTCTATATGTTCTTTTTTGTTGGTGCTGATAGAAATGTTTTGTAATTATTATAGGTACATGCAATGCTTTAGAAATGGATGATAGCGGTCATTTCAAGTTTTGCTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAAACCTATCATTTTTGTTGATGGAATGCTTTTGAAG

mRNA sequence

TGTCTACTGATTATTCCATTCCAAAAGAGATTGTGCATAAGGCTCATACAAATCTTGGAGTTAATATAAGTTATTAGAAAGCTTGGAGGTCAAAAGAAGACATAGTAAAGATATTAAAAGGTGACACAATTGAATCGTATATGTTGATTCCAAGCTTCTTTGATAAATTGGTTGAATCTAACCTAGAAATGGATGATAGCGGTCATTTCAAGTTTTGCTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAAACCTATCATTTTTGTTGATGGAATGCTTTTGAAG

Coding sequence (CDS)

ATGTTGATTCCAAGCTTCTTTGATAAATTGGTTGAATCTAACCTAGAAATGGATGATAGCGGTCATTTCAAGTTTTGCTTTATGGCTTTTGGTGCATCAATTGAGGGGTGGAAATATTGTAAACCTATCATTTTTGTTGATGGAATGCTTTTGAAG

Protein sequence

MLIPSFFDKLVESNLEMDDSGHFKFCFMAFGASIEGWKYCKPIIFVDGMLLK
Homology
BLAST of MELO3C033006.jh1 vs. NCBI nr
Match: TYK02872.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 5.04e-24
Identity = 47/57 (82.46%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 2   LIPSFFDKLVESN------LEMDDSGHFKFCFMAFGASIEGWKYCKPIIFVDGMLLK 52
           LIP FFDKLVESN      LEMDDSGHFKFCFMAFGASIEGWKYCKPII+VDG  LK
Sbjct: 67  LIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGKFLK 123

BLAST of MELO3C033006.jh1 vs. NCBI nr
Match: KAA0037812.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 2.83e-23
Identity = 47/57 (82.46%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 2   LIPSFFDKLVESN------LEMDDSGHFKFCFMAFGASIEGWKYCKPIIFVDGMLLK 52
           LIP FFDKLVESN      LEMDDSGHFKFCFMAFGASIEGWKYCKPII+VDG  LK
Sbjct: 67  LIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGKFLK 123

BLAST of MELO3C033006.jh1 vs. NCBI nr
Match: TYJ97736.1 (spore wall protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 4.29e-22
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0

Query: 2  LIPSFFDKLVESN------LEMDDSGHFKFCFMAFGASIEGWKYCKPIIFVDGMLLK 52
          LIP FFDKLVESN      LEMDD G+FKFCF+AFGASIEGWKYC+PII+VDG  LK
Sbjct: 15 LIPRFFDKLVESNPDTCTALEMDDCGNFKFCFIAFGASIEGWKYCRPIIYVDGTFLK 71

BLAST of MELO3C033006.jh1 vs. NCBI nr
Match: KAA0065300.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa] >TYK24167.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 8.70e-22
Identity = 44/57 (77.19%), Postives = 46/57 (80.70%), Query Frame = 0

Query: 2  LIPSFFDKLVESN------LEMDDSGHFKFCFMAFGASIEGWKYCKPIIFVDGMLLK 52
          LIP FFDKLVESN      LEMDDSGHFKF FMAFGASIEGWKYC+P+I VDG  LK
Sbjct: 15 LIPRFFDKLVESNPGTCTALEMDDSGHFKFFFMAFGASIEGWKYCRPVISVDGTFLK 71

BLAST of MELO3C033006.jh1 vs. NCBI nr
Match: KAA0025396.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.60e-21
Identity = 43/58 (74.14%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 1  MLIPSFFDKLVESN------LEMDDSGHFKFCFMAFGASIEGWKYCKPIIFVDGMLLK 52
          +L+P  FDKLVESN      LEMDDSGHFKFCFMAFGASIEGWKYC+PII VDG   K
Sbjct: 14 ILLPRLFDKLVESNQGTCTDLEMDDSGHFKFCFMAFGASIEGWKYCRPIISVDGTFFK 71

BLAST of MELO3C033006.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BVN2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00010 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.44e-24
Identity = 47/57 (82.46%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 2   LIPSFFDKLVESN------LEMDDSGHFKFCFMAFGASIEGWKYCKPIIFVDGMLLK 52
           LIP FFDKLVESN      LEMDDSGHFKFCFMAFGASIEGWKYCKPII+VDG  LK
Sbjct: 67  LIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGKFLK 123

BLAST of MELO3C033006.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T2W2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold918G00260 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.37e-23
Identity = 47/57 (82.46%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 2   LIPSFFDKLVESN------LEMDDSGHFKFCFMAFGASIEGWKYCKPIIFVDGMLLK 52
           LIP FFDKLVESN      LEMDDSGHFKFCFMAFGASIEGWKYCKPII+VDG  LK
Sbjct: 67  LIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGKFLK 123

BLAST of MELO3C033006.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BF75 (Spore wall protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00370 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.08e-22
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0

Query: 2  LIPSFFDKLVESN------LEMDDSGHFKFCFMAFGASIEGWKYCKPIIFVDGMLLK 52
          LIP FFDKLVESN      LEMDD G+FKFCF+AFGASIEGWKYC+PII+VDG  LK
Sbjct: 15 LIPRFFDKLVESNPDTCTALEMDDCGNFKFCFIAFGASIEGWKYCRPIIYVDGTFLK 71

BLAST of MELO3C033006.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VDN9 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1425G00040 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.21e-22
Identity = 44/57 (77.19%), Postives = 46/57 (80.70%), Query Frame = 0

Query: 2  LIPSFFDKLVESN------LEMDDSGHFKFCFMAFGASIEGWKYCKPIIFVDGMLLK 52
          LIP FFDKLVESN      LEMDDSGHFKF FMAFGASIEGWKYC+P+I VDG  LK
Sbjct: 15 LIPRFFDKLVESNPGTCTALEMDDSGHFKFFFMAFGASIEGWKYCRPVISVDGTFLK 71

BLAST of MELO3C033006.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SHS9 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00280 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.73e-22
Identity = 43/58 (74.14%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 1  MLIPSFFDKLVESN------LEMDDSGHFKFCFMAFGASIEGWKYCKPIIFVDGMLLK 52
          +L+P  FDKLVESN      LEMDDSGHFKFCFMAFGASIEGWKYC+PII VDG   K
Sbjct: 14 ILLPRLFDKLVESNQGTCTDLEMDDSGHFKFCFMAFGASIEGWKYCRPIISVDGTFFK 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK02872.15.04e-2482.46protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa][more]
KAA0037812.12.83e-2382.46protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa][more]
TYJ97736.14.29e-2275.44spore wall protein 2-like [Cucumis melo var. makuwa][more]
KAA0065300.18.70e-2277.19protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa] >TYK24167.1 prot... [more]
KAA0025396.11.60e-2174.14protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BVN22.44e-2482.46Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7T2W21.37e-2382.46Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3BF752.08e-2275.44Spore wall protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7VDN94.21e-2277.19Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7SHS97.73e-2274.14Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033006.jh1.t1MELO3C033006.jh1.t1mRNA