MELO3C033001 (gene) Melon (DHL92) v4

Overview
NameMELO3C033001
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGag/pol protein
Locationchr08: 14569423 .. 14569751 (-)
RNA-Seq ExpressionMELO3C033001
SyntenyMELO3C033001
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCTTCCAATGAAAATGTGAAATTAGACGGATCTTTGAATCTCGCATCGAAAATGAAGTGGAAGATCCAGAGAATGATGAAAAGGACGATGAGGAAAGAGATAAAGATGTGGATTATGCATCATCTTCCATGCCATCATCATCGAAAAATGCTCTCATTTCGACAAGATGTAAATCTGCACCATATCGTTCGTCGTTTAACGATAACCGGTACTTGAATTTTTCGATTACAAGTGACAGAACTGCCGAAGAGGAAGAGAAAATAGAGAGCAGTAGTGATTCGACTCTAAACCCTAAAGTGAGATTGAGAAGAGAGGGAAGAAAGGC

mRNA sequence

ATGCTCTTCCAATGAAAATGTGAAATTAGACGGATCTTTGAATCTCGCATCGAAAATGAAGTGGAAGATCCAGAGAATGATGAAAAGGACGATGAGGAAAGAGATAAAGATGTGGATTATGCATCATCTTCCATGCCATCATCATCGAAAAATGCTCTCATTTCGACAAGATGTAAATCTGCACCATATCGTTCGTCGTTTAACGATAACCGGTACTTGAATTTTTCGATTACAAGTGACAGAACTGCCGAAGAGGAAGAGAAAATAGAGAGCAGTAGTGATTCGACTCTAAACCCTAAAGTGAGATTGAGAAGAGAGGGAAGAAAGGC

Coding sequence (CDS)

ATGCCATCATCATCGAAAAATGCTCTCATTTCGACAAGATGTAAATCTGCACCATATCGTTCGTCGTTTAACGATAACCGGTACTTGAATTTTTCGATTACAAGTGACAGAACTGCCGAAGAGGAAGAGAAAATAGAGAGCAGTAGTGATTCGACTCTAAACCCTAAAGTGAGATTGAGAAGAGAGGGAAGAAAG

Protein sequence

MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIESSSDSTLNPKVRLRREGRK
Homology
BLAST of MELO3C033001 vs. NCBI nr
Match: KAA0033202.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK07502.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 4.5e-20
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1   MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIESSSDSTLNPK 57
           MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIESSSDSTLNPK
Sbjct: 133 MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIESSSDSTLNPK 188

BLAST of MELO3C033001 vs. NCBI nr
Match: KAA0039548.1 (uncharacterized protein E6C27_scaffold744G00170 [Cucumis melo var. makuwa] >TYK01752.1 uncharacterized protein E5676_scaffold775G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-10
Identity = 46/65 (70.77%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 1   MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIESSSDSTLNPKVRLR 60
           MPS  KN LI T       RSSFN+NRY + SITSD T EEEEKIES  DSTLNPKVRLR
Sbjct: 45  MPSPQKNTLIPTS------RSSFNNNRYQSSSITSDITIEEEEKIESGGDSTLNPKVRLR 103

Query: 61  REGRK 66
           REGRK
Sbjct: 105 REGRK 103

BLAST of MELO3C033001 vs. NCBI nr
Match: KAA0054315.1 (uncharacterized protein E6C27_scaffold24G00360 [Cucumis melo var. makuwa] >TYK12351.1 uncharacterized protein E5676_scaffold302G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-08
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0

Query: 1  MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIE 47
          MPSS KNALISTRC+  P  SSFNDNRY + SITSDRT EEEEKIE
Sbjct: 45 MPSSPKNALISTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of MELO3C033001 vs. NCBI nr
Match: KAA0061741.1 (uncharacterized protein E6C27_scaffold212G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 1  MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIE 47
          MPSS KNALI TRC+  P  SSFNDNRY + SITSDRT EEEEKIE
Sbjct: 45 MPSSPKNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of MELO3C033001 vs. NCBI nr
Match: KAA0035440.1 (uncharacterized protein E6C27_scaffold285G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 1  MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIE 47
          MPSS KNALI TRC+  P  SSFNDNRY + SITSDRT EEEEKIE
Sbjct: 45 MPSSPKNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of MELO3C033001 vs. ExPASy TrEMBL
Match: A0A5A7SPT6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00190 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.2e-20
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1   MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIESSSDSTLNPK 57
           MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIESSSDSTLNPK
Sbjct: 133 MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIESSSDSTLNPK 188

BLAST of MELO3C033001 vs. ExPASy TrEMBL
Match: A0A5D3BSH6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00820 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.4e-11
Identity = 46/65 (70.77%), Postives = 48/65 (73.85%), Query Frame = 0

Query: 1   MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIESSSDSTLNPKVRLR 60
           MPS  KN LI T       RSSFN+NRY + SITSD T EEEEKIES  DSTLNPKVRLR
Sbjct: 45  MPSPQKNTLIPTS------RSSFNNNRYQSSSITSDITIEEEEKIESGGDSTLNPKVRLR 103

Query: 61  REGRK 66
           REGRK
Sbjct: 105 REGRK 103

BLAST of MELO3C033001 vs. ExPASy TrEMBL
Match: A0A5A7UKV8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001280 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0

Query: 1  MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIE 47
          MPSS KNALISTRC+  P  SSFNDNRY + SITSDRT EEEEKIE
Sbjct: 45 MPSSPKNALISTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of MELO3C033001 vs. ExPASy TrEMBL
Match: A0A5A7V7N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001160 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.6e-08
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 1  MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIE 47
          MPSS KNALI TRC+  P  SSFNDNRY + SITSDRT EEEEKIE
Sbjct: 45 MPSSPKNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of MELO3C033001 vs. ExPASy TrEMBL
Match: A0A5A7SWM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00630 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.6e-08
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 1  MPSSSKNALISTRCKSAPYRSSFNDNRYLNFSITSDRTAEEEEKIE 47
          MPSS KNALI TRC+  P  SSFNDNRY + SITSDRT EEEEKIE
Sbjct: 45 MPSSPKNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0033202.14.5e-20100.00gag/pol protein [Cucumis melo var. makuwa] >TYK07502.1 gag/pol protein [Cucumis ... [more]
KAA0039548.11.1e-1070.77uncharacterized protein E6C27_scaffold744G00170 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0054315.13.1e-0878.26uncharacterized protein E6C27_scaffold24G00360 [Cucumis melo var. makuwa] >TYK12... [more]
KAA0061741.11.2e-0776.09uncharacterized protein E6C27_scaffold212G001160 [Cucumis melo var. makuwa][more]
KAA0035440.11.2e-0776.09uncharacterized protein E6C27_scaffold285G00630 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SPT62.2e-20100.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G001... [more]
A0A5D3BSH65.4e-1170.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UKV81.5e-0878.26Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V7N35.6e-0876.09Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SWM45.6e-0876.09Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033001.1MELO3C033001.1mRNA