MELO3C032994 (gene) Melon (DHL92) v4

Overview
NameMELO3C032994
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionChloride channel protein
Locationchr02: 22068429 .. 22068674 (+)
RNA-Seq ExpressionMELO3C032994
SyntenyMELO3C032994
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGTGCATCGTCATGGTTGAAATTTCAAACAATTTGAAATTTTTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGTAAGTTAACAAATTGAAAATTGAAATTTTAACCGTTCAACAAGTTTATTTCCACGTGAGAGTGGGTTATGTATATAATCACTTGAGGCTATTGGTGATGCCTTTAATGAAGGCCTGCATGAAGAGTAAGCCCAATTGAAGGGTATTCCATTACTGGAATGA

mRNA sequence

ATGGGTATGTGCATCGTCATGGTTGAAATTTCAAACAATTTGAAATTTTTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGCTATTGGTGATGCCTTTAATGAAGGCCTGCATGAAGAGTAAGCCCAATTGAAGGGTATTCCATTACTGGAATGA

Coding sequence (CDS)

ATGGGTATGTGCATCGTCATGGTTGAAATTTCAAACAATTTGAAATTTTTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGCTATTGGTGATGCCTTTAATGAAGGCCTGCATGAAGAGTAA

Protein sequence

MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHEE
Homology
[Close]
BLAST of MELO3C032994 vs. NCBI nr
Match: KAA0061703.1 (chloride channel protein CLC-d [Cucumis melo var. makuwa] >TYK21178.1 chloride channel protein CLC-d [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHEE 42
           + +C++MVEISNNLKFLPLIMLVLLMSKA+GDAFNEGL+EE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEE 562

[Close]
BLAST of MELO3C032994 vs. NCBI nr
Match: XP_023006122.1 (chloride channel protein CLC-d isoform X1 [Cucurbita maxima])

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHEE 42
           + +C++MVEISNNLKFLPLIMLVLLMSKA+GDAFNEGL+EE
Sbjct: 530 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEE 570

[Close]
BLAST of MELO3C032994 vs. NCBI nr
Match: XP_023006123.1 (chloride channel protein CLC-d isoform X2 [Cucurbita maxima])

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHEE 42
           + +C++MVEISNNLKFLPLIMLVLLMSKA+GDAFNEGL+EE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEE 562

[Close]
BLAST of MELO3C032994 vs. NCBI nr
Match: XP_023548210.1 (chloride channel protein CLC-d isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHEE 42
           + +C++MVEISNNLKFLPLIMLVLLMSKA+GDAFNEGL+EE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEE 562

[Close]
BLAST of MELO3C032994 vs. NCBI nr
Match: XP_022959117.1 (chloride channel protein CLC-d isoform X1 [Cucurbita moschata])

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHEE 42
           + +C++MVEISNNLKFLPLIMLVLLMSKA+GDAFNEGL+EE
Sbjct: 530 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEE 570

[Close]
BLAST of MELO3C032994 vs. ExPASy Swiss-Prot
Match: P92943 (Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-10
Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHE 41
           + +C++MVEI+NNLK LPLIMLVLL+SKA+GDAFNEGL+E
Sbjct: 524 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYE 563

[Close]
BLAST of MELO3C032994 vs. ExPASy Swiss-Prot
Match: Q96282 (Chloride channel protein CLC-c OS=Arabidopsis thaliana OX=3702 GN=CLC-C PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 7.1e-06
Identity = 19/41 (46.34%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHEE 42
           + +C++++E++NNL  LPL+MLVLL+SK + D FN G++++
Sbjct: 536 VSLCVILLELTNNLLMLPLVMLVLLISKTVADCFNRGVYDQ 576

[Close]
BLAST of MELO3C032994 vs. ExPASy Swiss-Prot
Match: P92942 (Chloride channel protein CLC-b OS=Arabidopsis thaliana OX=3702 GN=CLC-B PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 3.0e-04
Identity = 16/40 (40.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHE 41
           + +C++ +E++NNL  LP+ M+VLL++K +GD+FN  +++
Sbjct: 525 VSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYD 564

[Close]
BLAST of MELO3C032994 vs. ExPASy Swiss-Prot
Match: P92941 (Chloride channel protein CLC-a OS=Arabidopsis thaliana OX=3702 GN=CLC-A PE=1 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 3.9e-04
Identity = 17/40 (42.50%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHE 41
           + +C++ +E++NNL  LP+ M VLL++K +GD+FN  ++E
Sbjct: 526 VSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYE 565

[Close]
BLAST of MELO3C032994 vs. ExPASy TrEMBL
Match: A0A5D3DCE9 (Chloride channel protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00500 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-10
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHEE 42
           + +C++MVEISNNLKFLPLIMLVLLMSKA+GDAFNEGL+EE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEE 562

[Close]
BLAST of MELO3C032994 vs. ExPASy TrEMBL
Match: A0A6J1KV19 (Chloride channel protein OS=Cucurbita maxima OX=3661 GN=LOC111498958 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-10
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHEE 42
           + +C++MVEISNNLKFLPLIMLVLLMSKA+GDAFNEGL+EE
Sbjct: 530 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEE 570

[Close]
BLAST of MELO3C032994 vs. ExPASy TrEMBL
Match: A0A6J1L425 (Chloride channel protein OS=Cucurbita maxima OX=3661 GN=LOC111498958 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-10
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHEE 42
           + +C++MVEISNNLKFLPLIMLVLLMSKA+GDAFNEGL+EE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEE 562

[Close]
BLAST of MELO3C032994 vs. ExPASy TrEMBL
Match: A0A0A0KI42 (Chloride channel protein OS=Cucumis sativus OX=3659 GN=Csa_6G425060 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-10
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHEE 42
           + +C++MVEISNNLKFLPLIMLVLLMSKA+GDAFNEGL+EE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEE 562

[Close]
BLAST of MELO3C032994 vs. ExPASy TrEMBL
Match: A0A6J1H3N7 (Chloride channel protein OS=Cucurbita moschata OX=3662 GN=LOC111460209 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-10
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHEE 42
           + +C++MVEISNNLKFLPLIMLVLLMSKA+GDAFNEGL+EE
Sbjct: 530 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEE 570

[Close]
BLAST of MELO3C032994 vs. TAIR 10
Match: AT5G26240.1 (chloride channel D )

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-11
Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHE 41
           + +C++MVEI+NNLK LPLIMLVLL+SKA+GDAFNEGL+E
Sbjct: 524 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYE 563

[Close]
BLAST of MELO3C032994 vs. TAIR 10
Match: AT5G49890.1 (chloride channel C )

HSP 1 Score: 50.1 bits (118), Expect = 5.1e-07
Identity = 19/41 (46.34%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHEE 42
           + +C++++E++NNL  LPL+MLVLL+SK + D FN G++++
Sbjct: 536 VSLCVILLELTNNLLMLPLVMLVLLISKTVADCFNRGVYDQ 576

[Close]
BLAST of MELO3C032994 vs. TAIR 10
Match: AT3G27170.1 (chloride channel B )

HSP 1 Score: 44.7 bits (104), Expect = 2.1e-05
Identity = 16/40 (40.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHE 41
           + +C++ +E++NNL  LP+ M+VLL++K +GD+FN  +++
Sbjct: 525 VSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYD 564

[Close]
BLAST of MELO3C032994 vs. TAIR 10
Match: AT5G40890.1 (chloride channel A )

HSP 1 Score: 44.3 bits (103), Expect = 2.8e-05
Identity = 17/40 (42.50%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHE 41
           + +C++ +E++NNL  LP+ M VLL++K +GD+FN  ++E
Sbjct: 526 VSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYE 565

[Close]
BLAST of MELO3C032994 vs. TAIR 10
Match: AT5G40890.2 (chloride channel A )

HSP 1 Score: 44.3 bits (103), Expect = 2.8e-05
Identity = 17/40 (42.50%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 1   MGMCIVMVEISNNLKFLPLIMLVLLMSKAIGDAFNEGLHE 41
           + +C++ +E++NNL  LP+ M VLL++K +GD+FN  ++E
Sbjct: 394 VSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYE 433

The following BLAST results are available for this feature:
BLAST of MELO3C032994 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0061703.11.3e-0982.93chloride channel protein CLC-d [Cucumis melo var. makuwa] >TYK21178.1 chloride c... [more]
XP_023006122.11.3e-0982.93chloride channel protein CLC-d isoform X1 [Cucurbita maxima][more]
XP_023006123.11.3e-0982.93chloride channel protein CLC-d isoform X2 [Cucurbita maxima][more]
XP_023548210.11.3e-0982.93chloride channel protein CLC-d isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022959117.11.3e-0982.93chloride channel protein CLC-d isoform X1 [Cucurbita moschata][more]
BLAST of MELO3C032994 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P929432.1e-1075.00Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=... [more]
Q962827.1e-0646.34Chloride channel protein CLC-c OS=Arabidopsis thaliana OX=3702 GN=CLC-C PE=1 SV=... [more]
P929423.0e-0440.00Chloride channel protein CLC-b OS=Arabidopsis thaliana OX=3702 GN=CLC-B PE=1 SV=... [more]
P929413.9e-0442.50Chloride channel protein CLC-a OS=Arabidopsis thaliana OX=3702 GN=CLC-A PE=1 SV=... [more]
BLAST of MELO3C032994 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DCE96.5e-1082.93Chloride channel protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A6J1KV196.5e-1082.93Chloride channel protein OS=Cucurbita maxima OX=3661 GN=LOC111498958 PE=3 SV=1[more]
A0A6J1L4256.5e-1082.93Chloride channel protein OS=Cucurbita maxima OX=3661 GN=LOC111498958 PE=3 SV=1[more]
A0A0A0KI426.5e-1082.93Chloride channel protein OS=Cucumis sativus OX=3659 GN=Csa_6G425060 PE=3 SV=1[more]
A0A6J1H3N76.5e-1082.93Chloride channel protein OS=Cucurbita moschata OX=3662 GN=LOC111460209 PE=3 SV=1[more]
BLAST of MELO3C032994 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G26240.11.5e-1175.00chloride channel D [more]
AT5G49890.15.1e-0746.34chloride channel C [more]
AT3G27170.12.1e-0540.00chloride channel B [more]
AT5G40890.12.8e-0542.50chloride channel A [more]
AT5G40890.22.8e-0542.50chloride channel A [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3080.10Clc chloride channelcoord: 1..41
e-value: 2.5E-5
score: 25.3
NoneNo IPR availablePANTHERPTHR11689CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBERcoord: 3..41
NoneNo IPR availablePANTHERPTHR11689:SF143CHLORIDE CHANNEL PROTEIN CLC-Dcoord: 3..41

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032994.1MELO3C032994.1mRNA