MELO3C032990 (gene) Melon (DHL92) v4

Overview
NameMELO3C032990
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionIntegrase
Locationchr08: 13578591 .. 13579020 (+)
RNA-Seq ExpressionMELO3C032990
SyntenyMELO3C032990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTAATTTTGAAATTCTTATGATTGACTATTAATTGAATATTCACTAATAAGAAAAGTGTACGCACTTTATTGATATATGTATGTTGCAACTATGTAGCTATTCATACATGGCTTTCTTAACATTCATATACTCCTCTAAACTCAAGCATTATAATTAGTTAAAATTTTAAAAGTTATGATAAGATGTTGAACAATGAAGCTCACACCAACTCAAATGAAGAGGAAAATGAAACACATGTCGGAAATTCATGGGATAACATTCAAAATCAAGCCAGTCAAGAGGCAATCATTATGACTCAAGGCTGAATGACAAAAGCTAGAGCTAAAAGACTTCAAGATTGATTAAATGATTGTTTACAAGCTAGATTTTTGGACTTCAATAAAGATTTGGAACTTCAAGAGTCACTTGGACACCCAAGGGTCATAA

mRNA sequence

CATTTAATTTTGAAATTCTTATGATTGACTATTAATTGAATATTCACTAATAAGAAAAGTGTACGCACTTTATTGATATATGTATGTTGCAACTATGTAGCTATTCATACATGGCTTTCTTAACATTCATATACTCCTCTAAACTCAAGCATTATAATTAGTTAAAATTTTAAAAGTTATGATAAGATGTTGAACAATGAAGCTCACACCAACTCAAATGAAGAGGAAAATGAAACACATGTCGGAAATTCATGGGATAACATTCAAAATCAAGCCAGTCAAGAGGCAATCATTATGACTCAAGGCTGAATGACAAAAGCTAGAGCTAAAAGACTTCAAGATTGATTAAATGATTGTTTACAAGCTAGATTTTTGGACTTCAATAAAGATTTGGAACTTCAAGAGTCACTTGGACACCCAAGGGTCATAA

Coding sequence (CDS)

ATGTTGAACAATGAAGCTCACACCAACTCAAATGAAGAGGAAAATGAAACACATGTCGGAAATTCATGGGATAACATTCAAAATCAAGCCAGTCAAGAGGCAATCATTATGACTCAAGGCTGA

Protein sequence

MLNNEAHTNSNEEENETHVGNSWDNIQNQASQEAIIMTQG
Homology
BLAST of MELO3C032990 vs. NCBI nr
Match: TYK19543.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 4.9e-09
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 0

Query: 1   MLNNEAHTNSNEEENETHVGNSWDNIQNQASQEAIIMTQG 41
           MLN+EAHTNSNEEENETH GNSW+NIQ+Q +QEAIIMTQG
Sbjct: 435 MLNSEAHTNSNEEENETHAGNSWENIQSQTNQEAIIMTQG 474

BLAST of MELO3C032990 vs. NCBI nr
Match: TYK15114.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-06
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query: 1   MLNNEAHTNSNEEENETHVGNSWDNIQNQASQEAIIMTQG 41
           MLNNEA+TNSN+EENETH  NSW NIQ Q +QE IIMTQG
Sbjct: 369 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQG 408

BLAST of MELO3C032990 vs. NCBI nr
Match: KAA0065903.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-06
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query: 1   MLNNEAHTNSNEEENETHVGNSWDNIQNQASQEAIIMTQG 41
           MLNNEA+TNSN+EENETH  NSW NIQ Q +QE IIMTQG
Sbjct: 405 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQG 444

BLAST of MELO3C032990 vs. NCBI nr
Match: TYK14528.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 1  MLNNEAHTNSNEEENETHVGNSWDNIQNQASQEAII 37
          MLNNEAHTNSNE+ENE HVGNSW+N Q Q +QEAI+
Sbjct: 61 MLNNEAHTNSNEKENEAHVGNSWENFQRQTNQEAIM 96

BLAST of MELO3C032990 vs. ExPASy TrEMBL
Match: A0A5D3D7R5 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00380 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 0

Query: 1   MLNNEAHTNSNEEENETHVGNSWDNIQNQASQEAIIMTQG 41
           MLN+EAHTNSNEEENETH GNSW+NIQ+Q +QEAIIMTQG
Sbjct: 435 MLNSEAHTNSNEEENETHAGNSWENIQSQTNQEAIIMTQG 474

BLAST of MELO3C032990 vs. ExPASy TrEMBL
Match: A0A5D3CW05 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00430 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-06
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query: 1   MLNNEAHTNSNEEENETHVGNSWDNIQNQASQEAIIMTQG 41
           MLNNEA+TNSN+EENETH  NSW NIQ Q +QE IIMTQG
Sbjct: 369 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQG 408

BLAST of MELO3C032990 vs. ExPASy TrEMBL
Match: A0A5A7VCL9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00820 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-06
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query: 1   MLNNEAHTNSNEEENETHVGNSWDNIQNQASQEAIIMTQG 41
           MLNNEA+TNSN+EENETH  NSW NIQ Q +QE IIMTQG
Sbjct: 405 MLNNEAYTNSNKEENETHAENSWGNIQIQTNQETIIMTQG 444

BLAST of MELO3C032990 vs. ExPASy TrEMBL
Match: A0A5D3CTJ1 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00060 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-06
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 1  MLNNEAHTNSNEEENETHVGNSWDNIQNQASQEAII 37
          MLNNEAHTNSNE+ENE HVGNSW+N Q Q +QEAI+
Sbjct: 61 MLNNEAHTNSNEKENEAHVGNSWENFQRQTNQEAIM 96

BLAST of MELO3C032990 vs. ExPASy TrEMBL
Match: A0A5D3B744 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001050 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.8e-04
Identity = 24/31 (77.42%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 10  SNEEENETHVGNSWDNIQNQASQEAIIMTQG 41
           ++EEENETH GNSW+NIQ+Q +QEAIIMTQG
Sbjct: 786 NSEEENETHAGNSWENIQSQTNQEAIIMTQG 816

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK19543.14.9e-0985.00Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
TYK15114.13.0e-0677.50Zinc finger, CCHC-type [Cucumis melo var. makuwa][more]
KAA0065903.13.0e-0677.50reverse transcriptase [Cucumis melo var. makuwa][more]
TYK14528.11.1e-0577.78integrase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D7R52.4e-0985.00Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3CW051.5e-0677.50Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
A0A5A7VCL91.5e-0677.50Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold53... [more]
A0A5D3CTJ15.5e-0677.78Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00060 PE=4... [more]
A0A5D3B7448.8e-0477.42Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032990.1MELO3C032990.1mRNA