MELO3C032972.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C032972.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionGirdin-like
Locationchr08: 12012323 .. 12013583 (+)
RNA-Seq ExpressionMELO3C032972.jh1
SyntenyMELO3C032972.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGGTATGACAATTTGGGATCCAACATATCCAAGGAAGGAGGCTTGGTTGTCTTTCTTTGTAAAACTGACTTATGAAAATGTCATATGGAAGGCTTAAAGGATGCCTTTGAAGGCAGTAATATATAGATGCAGAGATTTTCACAGTGTGCCTTTGTTGGGACCATGGGGAGGTGTTAACTATACACCATTGTTAGTTTTGCATCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTGCAAGAGTCTAACTTTTCATACGATCCTGAAGATTGCCAAGGGAAAAAACGTCAAGCACTATGCGCATGGAAATCTGTAAGGAAGATAAAAGAAAAAGGACATTAAGAAGGAGTTACTAATGAGTACGAGACATGGCAGACAAACAGAAGGAAGAATATAATAGATATCTCAAGGGAGGTAGTTGAAAGGGAAAAAGAGACAAGCTTCGAACAACCAAATCAATGGATTGAGAATAGTATAGAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCATAAAGAGACAAGTCAATGGATGGATCATGCGACTTATTTGCAGAACAAACTCGAAAAGACTAAGAGTTTCTTAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGATGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGGAGCTTGAAAACTGAGAAGACAATATTACAAGCAACAGTGAGGTTGTAAGATGAATATATTAAAGATTTAGAAAGTAGGAAGGAAGATTTTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACAAGAAACACAAATAATGGATTTGAAAGCACACAATCATTCTTTGCTTCAAACTGTTGATAGCCTACATCTGAAGATGGCCGAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTAAGAGGATAATAAAAGAATATGAGTCATTGAAGATAGATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACGAGAGAACAAATGGAACGTGTAAATCAGACAATCGAATTTCTCAAAATGGTGTCCAAAAGAGCAAATGGTTTTGTAGAATGGGCAGCTGATTTGAGAGTTAATTTTTTCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAAAGAACTAGGATATTTTGGTCGTTTTCATTAATTGTTCATTTTGCAATTTA

mRNA sequence

TTTGGTATGACAATTTGGGATCCAACATATCCAAGGAAGGAGGCTTGGTTGTCTTTCTTTGTAAAACTGACTTATGAAAATGTCATATGGAAGGCTTAAAGGATGCCTTTGAAGGCAGTAATATATAGATGCAGAGATTTTCACAGTGTGCCTTTGTTGGGACCATGGGGAGGTGTTAACTATACACCATTGTTAGTTTTGCATCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTGCAAGAGTCTAACTTTTCATACGATCCTGAAGATTGCCAAGGGAAAAAACGTCAAGCACTATGCGCATGGAAATCTGTAAGGAAGATAAAAGAAAAAGGACATTAAGAAGGAGTTACTAATGAGTACGAGACATGGCAGACAAACAGAAGGAAGAATATAATAGATATCTCAAGGGAGGTAGTTGAAAGGGAAAAAGAGACAAGCTTCGAACAACCAAATCAATGGATTGAGAATAGTATAGAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCATAAAGAGACAAGTCAATGGATGGATCATGCGACTTATTTGCAGAACAAACTCGAAAAGACTAAGAGTTTCTTAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGATGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGGAGCTTGAAAACTGAGAAGACAATATTACAAGCAACAGTGAGGTTGTAAGATGAATATATTAAAGATTTAGAAAGTAGGAAGGAAGATTTTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACAAGAAACACAAATAATGGATTTGAAAGCACACAATCATTCTTTGCTTCAAACTGTTGATAGCCTACATCTGAAGATGGCCGAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTAAGAGGATAATAAAAGAATATGAGTCATTGAAGATAGATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACGAGAGAACAAATGGAACGTGTAAATCAGACAATCGAATTTCTCAAAATGGTGTCCAAAAGAGCAAATGGTTTTGTAGAATGGGCAGCTGATTTGAGAGTTAATTTTTTCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAAAGAACTAGGATATTTTGGTCGTTTTCATTAATTGTTCATTTTGCAATTTA

Coding sequence (CDS)

ATGGATTTGAAAGCACACAATCATTCTTTGCTTCAAACTGTTGATAGCCTACATCTGAAGATGGCCGAGCGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTAAGAGGATAATAAAAGAATATGAGTCATTGAAGATAGATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACGAGAGAACAAATGGAACGTGTAAATCAGACAATCGAATTTCTCAAAATGGTGTCCAAAAGAGCAAATGGTTTTGTAGAATGGGCAGCTGATTTGAGAGTTAATTTTTTCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAAAGAACTAGGATATTTTGGTCGTTTTCATTAA

Protein sequence

MDLKAHNHSLLQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTAFQNSSKRIIKEYESLKIDYVQMKVDYDLQTREQMERVNQTIEFLKMVSKRANGFVEWAADLRVNFFSMQPHADDLNRFLKMICKELGYFGRFH
Homology
[Close]
BLAST of MELO3C032972.jh1 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 241 bits (614), Expect = 6.68e-77
Identity = 120/140 (85.71%), Postives = 129/140 (92.14%), Query Frame = 0 

Query: 1   MDLKAHNHSLLQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTAFQNSSKRIIKEYESLK 60
           MDL+A NHSL QTVDSLHLKMAERSEEYEILKNYVDSLHYQLTA QNSSKRI +EYESL 
Sbjct: 186 MDLEAQNHSLHQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLN 245

Query: 61  IDYVQMKVDYDLQTRE---QMERVNQTIEFLKMVSKRANGFVEWAADLRVNFFSMQPHAD 120
            DYVQMKVDYDLQTR+    +ERV+QTIEFL+MVSKRANGF EWAADLRVNFFS+QPHAD
Sbjct: 246 TDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSIQPHAD 305

Query: 121 DLNRFLKMICKELGYFGRFH 137
           DLNRFLKMIC+ELG+FGRFH
Sbjct: 306 DLNRFLKMICRELGHFGRFH 325

[Close]
BLAST of MELO3C032972.jh1 vs. NCBI nr
Match: KAA0060422.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 237 bits (604), Expect = 1.13e-76
Identity = 117/140 (83.57%), Postives = 128/140 (91.43%), Query Frame = 0 

Query: 1   MDLKAHNHSLLQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTAFQNSSKRIIKEYESLK 60
           MDL+A NHSL QTVDSLHLKMAE SEEYEILKNY DSLHYQLTA QNSS+RI +EYESL 
Sbjct: 92  MDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLN 151

Query: 61  IDYVQMKVDYDLQTRE---QMERVNQTIEFLKMVSKRANGFVEWAADLRVNFFSMQPHAD 120
           IDYVQMKVDYD++TR+    +ERV+QTIEFL+MVSKRANGFVEW ADLRVNFFSMQPHAD
Sbjct: 152 IDYVQMKVDYDMETRDFQVLVERVDQTIEFLRMVSKRANGFVEWTADLRVNFFSMQPHAD 211

Query: 121 DLNRFLKMICKELGYFGRFH 137
           DLNRFLKMIC+ELG+FGRFH
Sbjct: 212 DLNRFLKMICRELGHFGRFH 231

[Close]
BLAST of MELO3C032972.jh1 vs. NCBI nr
Match: TYK04062.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 229 bits (583), Expect = 8.78e-75
Identity = 116/140 (82.86%), Postives = 125/140 (89.29%), Query Frame = 0 

Query: 1   MDLKAHNHSLLQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTAFQNSSKRIIKEYESLK 60
           MDL+A NHSL QTVDSLHLKMAE SEEYEILKNY DSLHYQLTA QNSS+RI +EYESL 
Sbjct: 1   MDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLN 60

Query: 61  IDYVQMKVDYDLQTRE---QMERVNQTIEFLKMVSKRANGFVEWAADLRVNFFSMQPHAD 120
            DYVQMKVDYDLQTR+    +ERV+QTIEFL+MVSKRANGF E AADLRVNFFSMQPHAD
Sbjct: 61  TDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAECAADLRVNFFSMQPHAD 120

Query: 121 DLNRFLKMICKELGYFGRFH 137
           DLNRFLKMIC+ELG+F RFH
Sbjct: 121 DLNRFLKMICRELGHFRRFH 140

[Close]
BLAST of MELO3C032972.jh1 vs. NCBI nr
Match: KAA0036956.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 228 bits (581), Expect = 1.77e-74
Identity = 114/140 (81.43%), Postives = 123/140 (87.86%), Query Frame = 0 

Query: 1   MDLKAHNHSLLQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTAFQNSSKRIIKEYESLK 60
           MDL+A  HSL QTVDSLHLKMAERSEEYEILKNY D LHYQLTA QNSSKRI +EYESL 
Sbjct: 1   MDLEAQIHSLRQTVDSLHLKMAERSEEYEILKNYADFLHYQLTALQNSSKRITQEYESLN 60

Query: 61  IDYVQMKVDYDLQTRE---QMERVNQTIEFLKMVSKRANGFVEWAADLRVNFFSMQPHAD 120
            DYVQMKVDYDL TR+    +ERV+QTIEFL+MVSKRANGF EW A+LRVNFFSMQPHAD
Sbjct: 61  TDYVQMKVDYDLHTRDFQVLVERVDQTIEFLRMVSKRANGFAEWVANLRVNFFSMQPHAD 120

Query: 121 DLNRFLKMICKELGYFGRFH 137
           DLNRFLKMIC+ELG+FG FH
Sbjct: 121 DLNRFLKMICRELGHFGHFH 140

[Close]
BLAST of MELO3C032972.jh1 vs. NCBI nr
Match: TYK18656.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 235 bits (599), Expect = 5.11e-74
Identity = 116/140 (82.86%), Postives = 127/140 (90.71%), Query Frame = 0 

Query: 1   MDLKAHNHSLLQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTAFQNSSKRIIKEYESLK 60
           MDL+A NHSL QTVD+LHLKMAERSEEYEILKNYVDSLHYQLTA QNSSKRI +EYESL 
Sbjct: 234 MDLEAQNHSLRQTVDNLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLN 293

Query: 61  IDYVQMKVDYDLQTRE---QMERVNQTIEFLKMVSKRANGFVEWAADLRVNFFSMQPHAD 120
            DYVQMKVDYDLQTR+    +ERV+QTIEFL+M+SKRANGF EWAADLRV FFSM PHAD
Sbjct: 294 TDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMMSKRANGFAEWAADLRVKFFSMHPHAD 353

Query: 121 DLNRFLKMICKELGYFGRFH 137
           DLN+FLKMIC+ELG+FGRFH
Sbjct: 354 DLNKFLKMICRELGHFGRFH 373

[Close]
BLAST of MELO3C032972.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 241 bits (614), Expect = 3.23e-77
Identity = 120/140 (85.71%), Postives = 129/140 (92.14%), Query Frame = 0 

Query: 1   MDLKAHNHSLLQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTAFQNSSKRIIKEYESLK 60
           MDL+A NHSL QTVDSLHLKMAERSEEYEILKNYVDSLHYQLTA QNSSKRI +EYESL 
Sbjct: 186 MDLEAQNHSLHQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLN 245

Query: 61  IDYVQMKVDYDLQTRE---QMERVNQTIEFLKMVSKRANGFVEWAADLRVNFFSMQPHAD 120
            DYVQMKVDYDLQTR+    +ERV+QTIEFL+MVSKRANGF EWAADLRVNFFS+QPHAD
Sbjct: 246 TDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSIQPHAD 305

Query: 121 DLNRFLKMICKELGYFGRFH 137
           DLNRFLKMIC+ELG+FGRFH
Sbjct: 306 DLNRFLKMICRELGHFGRFH 325

[Close]
BLAST of MELO3C032972.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UX37 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE=4 SV=1)

HSP 1 Score: 237 bits (604), Expect = 5.49e-77
Identity = 117/140 (83.57%), Postives = 128/140 (91.43%), Query Frame = 0 

Query: 1   MDLKAHNHSLLQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTAFQNSSKRIIKEYESLK 60
           MDL+A NHSL QTVDSLHLKMAE SEEYEILKNY DSLHYQLTA QNSS+RI +EYESL 
Sbjct: 92  MDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLN 151

Query: 61  IDYVQMKVDYDLQTRE---QMERVNQTIEFLKMVSKRANGFVEWAADLRVNFFSMQPHAD 120
           IDYVQMKVDYD++TR+    +ERV+QTIEFL+MVSKRANGFVEW ADLRVNFFSMQPHAD
Sbjct: 152 IDYVQMKVDYDMETRDFQVLVERVDQTIEFLRMVSKRANGFVEWTADLRVNFFSMQPHAD 211

Query: 121 DLNRFLKMICKELGYFGRFH 137
           DLNRFLKMIC+ELG+FGRFH
Sbjct: 212 DLNRFLKMICRELGHFGRFH 231

[Close]
BLAST of MELO3C032972.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BYW3 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3019G00040 PE=4 SV=1)

HSP 1 Score: 229 bits (583), Expect = 4.25e-75
Identity = 116/140 (82.86%), Postives = 125/140 (89.29%), Query Frame = 0 

Query: 1   MDLKAHNHSLLQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTAFQNSSKRIIKEYESLK 60
           MDL+A NHSL QTVDSLHLKMAE SEEYEILKNY DSLHYQLTA QNSS+RI +EYESL 
Sbjct: 1   MDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNYADSLHYQLTALQNSSRRITQEYESLN 60

Query: 61  IDYVQMKVDYDLQTRE---QMERVNQTIEFLKMVSKRANGFVEWAADLRVNFFSMQPHAD 120
            DYVQMKVDYDLQTR+    +ERV+QTIEFL+MVSKRANGF E AADLRVNFFSMQPHAD
Sbjct: 61  TDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAECAADLRVNFFSMQPHAD 120

Query: 121 DLNRFLKMICKELGYFGRFH 137
           DLNRFLKMIC+ELG+F RFH
Sbjct: 121 DLNRFLKMICRELGHFRRFH 140

[Close]
BLAST of MELO3C032972.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T4A6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00360 PE=4 SV=1)

HSP 1 Score: 228 bits (581), Expect = 8.57e-75
Identity = 114/140 (81.43%), Postives = 123/140 (87.86%), Query Frame = 0 

Query: 1   MDLKAHNHSLLQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTAFQNSSKRIIKEYESLK 60
           MDL+A  HSL QTVDSLHLKMAERSEEYEILKNY D LHYQLTA QNSSKRI +EYESL 
Sbjct: 1   MDLEAQIHSLRQTVDSLHLKMAERSEEYEILKNYADFLHYQLTALQNSSKRITQEYESLN 60

Query: 61  IDYVQMKVDYDLQTRE---QMERVNQTIEFLKMVSKRANGFVEWAADLRVNFFSMQPHAD 120
            DYVQMKVDYDL TR+    +ERV+QTIEFL+MVSKRANGF EW A+LRVNFFSMQPHAD
Sbjct: 61  TDYVQMKVDYDLHTRDFQVLVERVDQTIEFLRMVSKRANGFAEWVANLRVNFFSMQPHAD 120

Query: 121 DLNRFLKMICKELGYFGRFH 137
           DLNRFLKMIC+ELG+FG FH
Sbjct: 121 DLNRFLKMICRELGHFGHFH 140

[Close]
BLAST of MELO3C032972.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D533 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE=4 SV=1)

HSP 1 Score: 235 bits (599), Expect = 2.47e-74
Identity = 116/140 (82.86%), Postives = 127/140 (90.71%), Query Frame = 0 

Query: 1   MDLKAHNHSLLQTVDSLHLKMAERSEEYEILKNYVDSLHYQLTAFQNSSKRIIKEYESLK 60
           MDL+A NHSL QTVD+LHLKMAERSEEYEILKNYVDSLHYQLTA QNSSKRI +EYESL 
Sbjct: 234 MDLEAQNHSLRQTVDNLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLN 293

Query: 61  IDYVQMKVDYDLQTRE---QMERVNQTIEFLKMVSKRANGFVEWAADLRVNFFSMQPHAD 120
            DYVQMKVDYDLQTR+    +ERV+QTIEFL+M+SKRANGF EWAADLRV FFSM PHAD
Sbjct: 294 TDYVQMKVDYDLQTRDFQVLVERVDQTIEFLRMMSKRANGFAEWAADLRVKFFSMHPHAD 353

Query: 121 DLNRFLKMICKELGYFGRFH 137
           DLN+FLKMIC+ELG+FGRFH
Sbjct: 354 DLNKFLKMICRELGHFGRFH 373

The following BLAST results are available for this feature:
BLAST of MELO3C032972.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK23632.16.68e-7785.71girdin-like [Cucumis melo var. makuwa][more]
KAA0060422.11.13e-7683.57girdin-like [Cucumis melo var. makuwa][more]
TYK04062.18.78e-7582.86girdin-like [Cucumis melo var. makuwa][more]
KAA0036956.11.77e-7481.43girdin-like [Cucumis melo var. makuwa][more]
TYK18656.15.11e-7482.86girdin-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C032972.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032972.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DJ953.23e-7785.71Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P... [more]
A0A5A7UX375.49e-7783.57Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE... [more]
A0A5D3BYW34.25e-7582.86Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3019G00040 P... [more]
A0A5A7T4A68.57e-7581.43Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00360 PE=... [more]
A0A5D3D5332.47e-7482.86Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE... [more]
BLAST of MELO3C032972.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032972.jh1.t1MELO3C032972.jh1.t1mRNA