MELO3C032958 (gene) Melon (DHL92) v4

Overview
NameMELO3C032958
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
Locationchr08: 10221353 .. 10221721 (+)
RNA-Seq ExpressionMELO3C032958
SyntenyMELO3C032958
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACATGTTCGAGCGAAAGAAGCTGAACTTAATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAATTGGTTATGATAGTCCGATGACGATGATGCCAACATTTGGAGCATGATATTGTGATTCTGAGGTCGGTACAGGATAATATGATGCAGCGGTCGGTCCATCTAATTCTTACATGCATGGACATGAACGTGGCTATGAGAAACATAACGAATATTTGTATCATGAAGCACCTGCAAATGTATCATATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAAAACATAAAGTTCAG

mRNA sequence

ATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACATGTTCGAGCGAAAGAAGCTGAACTTAATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAATTGGTTATGATAGTCCGATGACGATGATGCCAACATTTGGAGCATGATATTGTGATTCTGAGGTCGGTACAGGATAATATGATGCAGCGGTCGGTCCATCTAATTCTTACATGCATGGACATGAACGTGGCTATGAGAAACATAACGAATATTTGTATCATGAAGCACCTGCAAATGTATCATATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAAAACATAAAGTTCAG

Coding sequence (CDS)

ATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACATGTTCGAGCGAAAGAAGCTGAACTTAATGAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCAAATTGGTTATGATAGTCCGATGACGATGATGCCAACATTTGGAGCATGA

Protein sequence

MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA
Homology
BLAST of MELO3C032958 vs. NCBI nr
Match: KAA0062732.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK22530.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 3.5e-24
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 58
          MYDLPIVPPPVHRGHVRAK+AELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA
Sbjct: 36 MYDLPIVPPPVHRGHVRAKQAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 92

BLAST of MELO3C032958 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 8.9e-20
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0

Query: 1   MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 58
           MYDL IVPPPVHRG VR +EAEL+EVYHNVEEVPPTTQTQSQ GY SPMTMMPTFGA
Sbjct: 182 MYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGA 238

BLAST of MELO3C032958 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 8.9e-20
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0

Query: 1   MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 58
           MYDL IVPPPVHRG VR +EAEL+EVYHNVEEVPPTTQTQSQ GY SPMTMMPTFGA
Sbjct: 173 MYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGA 229

BLAST of MELO3C032958 vs. NCBI nr
Match: TYK16354.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 3.4e-19
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 1  MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 58
          MYDLPIVP PVHRG VR +EAEL+EVYHNVEEVPPTTQTQSQ GY  PMTMMPTFGA
Sbjct: 1  MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGRPMTMMPTFGA 57

BLAST of MELO3C032958 vs. NCBI nr
Match: KAA0061327.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 7.5e-19
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 1  MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 58
          MYDLPIVP PVHRG VR +EAEL+EVYHNVEEV PTTQTQSQ GY SPMTMMPTFGA
Sbjct: 1  MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGA 57

BLAST of MELO3C032958 vs. ExPASy TrEMBL
Match: A0A5D3DGQ9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00120 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-24
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 58
          MYDLPIVPPPVHRGHVRAK+AELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA
Sbjct: 36 MYDLPIVPPPVHRGHVRAKQAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 92

BLAST of MELO3C032958 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-20
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0

Query: 1   MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 58
           MYDL IVPPPVHRG VR +EAEL+EVYHNVEEVPPTTQTQSQ GY SPMTMMPTFGA
Sbjct: 182 MYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGA 238

BLAST of MELO3C032958 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-20
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0

Query: 1   MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 58
           MYDL IVPPPVHRG VR +EAEL+EVYHNVEEVPPTTQTQSQ GY SPMTMMPTFGA
Sbjct: 173 MYDLSIVPPPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGA 229

BLAST of MELO3C032958 vs. ExPASy TrEMBL
Match: A0A5D3CZG9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001380 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-19
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 1  MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 58
          MYDLPIVP PVHRG VR +EAEL+EVYHNVEEVPPTTQTQSQ GY  PMTMMPTFGA
Sbjct: 1  MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGRPMTMMPTFGA 57

BLAST of MELO3C032958 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.6e-19
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 1  MYDLPIVPPPVHRGHVRAKEAELNEVYHNVEEVPPTTQTQSQIGYDSPMTMMPTFGA 58
          MYDLPIVP PVHRG VR +EAEL+EVYHNVEEV PTTQTQSQ GY SPMTMMPTFGA
Sbjct: 1  MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGA 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0062732.13.5e-2498.25GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0038951.18.9e-2087.72mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK11193.18.9e-2087.72mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK16354.13.4e-1985.96GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0061327.17.5e-1985.96GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DGQ91.7e-2498.25GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7TBF84.3e-2087.72Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CH234.3e-2087.72Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CZG91.6e-1985.96GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7V4M13.6e-1985.96Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032958.1MELO3C032958.1mRNA