MELO3C032955 (gene) Melon (DHL92) v4

Overview


Name	MELO3C032955
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	U1 small nuclear ribonucleoprotein A isoform X2
Location	chr08: 3743217 .. 3747233 (-)
RNA-Seq Expression	MELO3C032955
Synteny	MELO3C032955

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAATTGTAACTCTCTCTTATCAAAACAAGAAAAATCAGACCCAACTCAAATAGGTTGTAAGTTGGTCTCACACACACTTGAAATCCCAACAACAAAGCCTGGGCTTCAAACACATCAACCAAACCCTCGACAAATCTAGCCATGTGATCATAGCTCCATGTGCATCTCTAACCACAAACCCAAAGTCATCCTTGTCAAAGAAGCCCAAGACGCTTGACCATGGTTCCACGTGCATCTCTAACCACCAACCCAAACCCATACTTGCTAGAGAAATCCAAGATGCGTCAACATTTAAGTTGAAGCAACTGCAGGGTGGTCACACCCAACATCAAAAGTTCAATTTTGAGGAGTGGCAGCCCTTTGCCAAGCAGCCAAGCAGCCAACCCCTCATCTAATAAGAAAGATTATATCCAAACAAAATGAAGCAACAACAACATTTGGAGTATATTAAAGCCATATGTGTTGTTATCCCATCGGCTATGGCAAGGCTGTTAGTTGAAAAACAATATAGCGGACTGAAATTGGGCCATTCGGAATTCGGCGTTTAATTGTGAGCCCATTTGAGTTTTGAGGGACAATGGTTTTATCACAATCGAAGCTATCCGACCCAAAATTCGGGGCTACCAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACTTGGTCAGAGACTCGGAGGGAAAAGCACTCCGATGGACGACATGACGAGCTACTATCCGCCACCGCAACCACCGCCGCAGCCTTCTGGTCTTGAACCTTCTCACTATCCCTATTACCAGGTGCCTCCTCCTCCTTCAGCACCGCCGTCTCAGCATTACCTCTCTCAACACCCGCCCACCTTCGCTTCTTATGGCTTACCTCTTCTACCTCACACAACCTCCATCAATGAGGTCCGTACCCTATTCATAGCTGGTCTTCCTGAAGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAGTTTCCGGGATACGAGTCCTCTCATCTTCGGACTCCCACGCAGACGACCCAGGTCTTCTACTTTGCAAAATTGTTGTTGTTGGTGTTTTCATTTCTTTTAATGGATTTTGTCTTTTTCTTCCGAATGTGAATTGTTTCTGATTTGGGTGCCTGGGTGCTTACACTTTTCAAAATAAGGTTAGCTTAAATTCGTGGGCATTTAGTTGCTTTCGTATCAAAGATGGAGATTAATGTTAGGATCGTGCAAGCGGAAGTCCCTCATGAAGTGATTACAAACAAATACTAAATGATCATGGGTATATAAGTGTGGGCAATTGGGTGGTTCCAAAAGCCAAGCTTTGACAGTTTATGCTGCTATATCATACCATTGTAGAGATAGGTGGAGGTTTGGTTGTCCTTATCAATCAAACTCCGGTTCATAGACAATTCTGGCTAGATCCCTGAATGTTTCTGAGCCTCTGACTTTTGAAGAAGTTGAAGATGATAATGGTTAAACGAAATTAGCTTGGACCTGGTTTTTTGGGGCTCATTTACCTGAGATTTTTCTTTTTGTGGCACCCAAATGTTGTAGCCTTAGCAGGGCACAAAGTGTGTGCAACTAGTCCGAGCACTCATGGACATAGAAAACAGAAGAAATACAAAGTTAAAAGTAAACCACAAACGAAGAAAATACAAAGTAAACCTATTTCTCAAAACTTAATTCAACATCCATTGAAACTCACCCATGCCCACTGTGAGATTGTTAAATAAATATAGATGTGCTGTCTCAAATTCTAACAGAATGTCATTATGAATATTGATACCAATACTGCTGCTTATAGCCTAATACCAATGCCGATGTGAAATCTGATGCATATTAGACTCCTTTGGCCTAATGAGTTTTAGCGGGATGCAATTTTTTTATATTAACAAAATTTTACAAATTGACATATTGCCATATCTGTGGACTCTATCTTTGTCCTATATCCGTATATGTGCTTCTTATGTTCTTGCCAGCTCAATGTAGGGACATTATTGACACGATCAGGGAGTTCTTCCTCCATCTGTCTTATTGTGAGAAGAGTTGTTTTGTTGGCTTGGTGTGTGTCCTATTTTGTGGGATATTTGGGGAGAACAAAATAGCAAAGTGTTTAGTGGGTTGGAGAGGGATCCTAGCAATATTTGGTCCTTTGTGTTAGATTTCATGCTTCTAGGGCTTCGATTTTAAAGATCATCTGCACCAATTTCTTAGGTACTATTTCTCCTTTTTATAGTTGGGGCACCTTTCTTTAGTGGGTTCTCCCCTGTATGCCTTTTTGTTCTTTCATTTAGTTTCAATGAAAGCGGTTGTTATTATTAAAAAGAAACTGTATTTCTTTGTTTTGTACCATTTAATTGGAAGATAGTGGCTTGTACTAGGACTTATGTGTTTTGTTGTCAGGACAGCAACCTGAAATATTTTTTTGGCAATGCTTAAACATGATTGTGTTGTACTATTTTTGTTTAGTATCCATGTTTAAGGGTTCTCAAGTTAGGCGATGTACTCTTAGGTTCTGGGAATGGTGGGCATACAAATTAGTCTCTATATTTTTGATCAAGTCAAGATGTATGCAGACCACAGAAAATGCGATGTTAATATCCCATGTTTTGAACTGCAAATGCTATGTTAATCTGTAGTTTCAAATCCAGTTAATATTGAAAGTGAAAGCTTGGGGAGCTTTATTGGTATTGGTAAAGCCAATTTACCAGCTTTTCATACTTTCTAACCTACAATCTATATTGCTGCAATAAATTGTAGTAAATTTGTGCAAATACTATTCAAATATGTGTTTTCTGTGCCTATGACTGTCACTTGAACTTTTAAAACATTGTAGTATTCTTTTTGCACTCTCATGAAATATCTTACATATAGAGTTTACCTATCACCGCTTGTGTTACTTTATTGATTAGTGTTAGGCACGAGTTTTCTTACAATTTTTTTTGGTGTGGTTACAGCCATTTGCATTTGCTGTATTCTCAGACCAGCAGTCTGCCGTTGGTGCAATGCATGCTGTAAATGTAAGTGTGCTTGTTCCTTGCTTCTGTATTCCAAGTTCTTTTGTTAAGAAAATCATTTTGATGATCAAAGGAAGTACATAAAAGGAACGTGGAAGAAGGGCATGGTGGGCTGAGGAATGAAGTAAGAAGAAAAAGAAAAAAGAGAGGTTGCAATGAAAAAGTGGTGGAAGATCGATAAGAAGACCTTGCAATTTAGATTTGTAAGAGAGATTCAGATCTGTGATAGGAGGGGGAGAGAAGAGGTAACGACTGTGGATGGGCAGGTGCAGCAACTGAGTGGAGAAAGAGGAAGGAGCTGGAGCGGAGGGGAAAGGGAAGGGCCAAAAGGGGTGGGTGGAGGTGGAGAGAGTTTTTTGTTTGTCTCTAAATTATTATTATTATTATTTTTTTCTTATAATTATTTTTATTATGCCACATCATCTCTGCATTGGAGCTGTTAACCAAGGAACTAAATTGAACTATTTCCTATGCTTTGGGACTTGATTGTTTAATTTTAAAACCTAGGAACTAAATTGAGACAAACCCTAAACCTCATGGAGTAATTAATTCTTTTTTTTTTCTTTTGCAATTTTGCTTTCAATTGGTTGGTCGTTCTTTTGATGCTGCTAATAATAATTGTAACAGGGGGTTAGAGAGTGTTTTGGGTCACCTTCTTAGCAGCTTATAAAATTAGAAATTGCAGGGATGAAGATAAAAAGATTTTTACTATGGGTTAATGTATCACATTAAATTATTGAAACAATTGGTTGCTCTTTGTTGTAGGGCATGGTGTTTGATCTCGAGAAGCAGTCAGTACTGTATGTTGACTTGGCTAAATCTAATTCAAGATCAAAACGGACGAGGACAGGTACATATCTTGATAGCTGTTCTACTACAAATTTATATTTATATTTTATTTAGTTGTATAACCAGTTTGAATATTTTCTTGATGTGTTCATCAAATGGTTAGAGGATGAAAGATATGGATCAGATAAGAAAGCTAAAGTATCTATCATTTCA

mRNA sequence

ATAAAATTGTAACTCTCTCTTATCAAAACAAGAAAAATCAGACCCAACTCAAATAGGTTGTAAGTTGGTCTCACACACACTTGAAATCCCAACAACAAAGCCTGGGCTTCAAACACATCAACCAAACCCTCGACAAATCTAGCCATGTGATCATAGCTCCATGTGCATCTCTAACCACAAACCCAAAGTCATCCTTGTCAAAGAAGCCCAAGACGCTTGACCATGGTTCCACGTGCATCTCTAACCACCAACCCAAACCCATACTTGCTAGAGAAATCCAAGATGCGTCAACATTTAAGTTGAAGCAACTGCAGGGTGGTCACACCCAACATCAAAAGTTCAATTTTGAGGAGTGGCAGCCCTTTGCCAAGCAGCCAAGCAGCCAACCCCTCATCTAATAAGAAAGATTATATCCAAACAAAATGAAGCAACAACAACATTTGGAGTATATTAAAGCCATATGTGTTGTTATCCCATCGGCTATGGCAAGGCTGTTAGTTGAAAAACAATATAGCGGACTGAAATTGGGCCATTCGGAATTCGGCGTTTAATTGTGAGCCCATTTGAGTTTTGAGGGACAATGGTTTTATCACAATCGAAGCTATCCGACCCAAAATTCGGGGCTACCAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACTTGGTCAGAGACTCGGAGGGAAAAGCACTCCGATGGACGACATGACGAGCTACTATCCGCCACCGCAACCACCGCCGCAGCCTTCTGGTCTTGAACCTTCTCACTATCCCTATTACCAGGTGCCTCCTCCTCCTTCAGCACCGCCGTCTCAGCATTACCTCTCTCAACACCCGCCCACCTTCGCTTCTTATGGCTTACCTCTTCTACCTCACACAACCTCCATCAATGAGGTCCGTACCCTATTCATAGCTGGTCTTCCTGAAGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAGTTTCCGGGATACGAGTCCTCTCATCTTCGGACTCCCACGCAGACGACCCAGCCATTTGCATTTGCTGTATTCTCAGACCAGCAGTCTGCCGTTGGTGCAATGCATGCTGTAAATTTGTATAACCAGTTTGAATATTTTCTTGATGTGTTCATCAAATGGTTAGAGGATGAAAGATATGGATCAGATAAGAAAGCTAAAGTATCTATCATTTCA

Coding sequence (CDS)

ATGGTTTTATCACAATCGAAGCTATCCGACCCAAAATTCGGGGCTACCAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACTTGGTCAGAGACTCGGAGGGAAAAGCACTCCGATGGACGACATGACGAGCTACTATCCGCCACCGCAACCACCGCCGCAGCCTTCTGGTCTTGAACCTTCTCACTATCCCTATTACCAGGTGCCTCCTCCTCCTTCAGCACCGCCGTCTCAGCATTACCTCTCTCAACACCCGCCCACCTTCGCTTCTTATGGCTTACCTCTTCTACCTCACACAACCTCCATCAATGAGGTCCGTACCCTATTCATAGCTGGTCTTCCTGAAGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAGTTTCCGGGATACGAGTCCTCTCATCTTCGGACTCCCACGCAGACGACCCAGCCATTTGCATTTGCTGTATTCTCAGACCAGCAGTCTGCCGTTGGTGCAATGCATGCTGTAAATTTGTATAACCAGTTTGAATATTTTCTTGATGTGTTCATCAAATGGTTAGAGGATGAAAGATATGGATCAGATAAGAAAGCTAAAGTATCTATCATTTCA

Protein sequence

MVLSQSKLSDPKFGATSSLSLSLSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNLYNQFEYFLDVFIKWLEDERYGSDKKAKVSIIS

Homology

[Close]

BLAST of MELO3C032955 vs. NCBI nr
Match: TYK12872.1 (U1 small nuclear ribonucleoprotein A isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 187/217 (86.18%), Postives = 190/217 (87.56%), Query Frame = 0


Query: 1   MVLSQSKLSDPKFGATSSLSLSLSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ 60
           MVLSQSK SDPKFGATS    SLSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ
Sbjct: 1   MVLSQSKQSDPKFGATS----SLSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ 60

Query: 61  PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP 120
           PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP
Sbjct: 61  PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP 120

Query: 121 EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVN-----LYN 180
           EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVN     L  
Sbjct: 121 EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEK 180

Query: 181 QFEYFLDVFIK-------WLEDERYGSDKKAKVSIIS 206
           Q   ++D+            EDERYGSDKKAKVSIIS
Sbjct: 181 QSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIIS 213

[Close]

BLAST of MELO3C032955 vs. NCBI nr
Match: XP_016899375.1 (PREDICTED: U1 small nuclear ribonucleoprotein A isoform X1 [Cucumis melo])

HSP 1 Score: 333.6 bits (854), Expect = 1.2e-87
Identity = 182/217 (83.87%), Postives = 186/217 (85.71%), Query Frame = 0


Query: 1   MVLSQSKLSDPKFGATSSLSLSLSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ 60
           MVLSQSKLSDP  G       +LSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ
Sbjct: 1   MVLSQSKLSDPNSGLP-----ALSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ 60

Query: 61  PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP 120
           PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP
Sbjct: 61  PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP 120

Query: 121 EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVN-----LYN 180
           EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVN     L  
Sbjct: 121 EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEK 180

Query: 181 QFEYFLDVFIK-------WLEDERYGSDKKAKVSIIS 206
           Q   ++D+            EDERYGSDKKAKVSIIS
Sbjct: 181 QSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIIS 212

[Close]

BLAST of MELO3C032955 vs. NCBI nr
Match: XP_008440306.2 (PREDICTED: protein WHI4 isoform X2 [Cucumis melo])

HSP 1 Score: 333.6 bits (854), Expect = 1.2e-87
Identity = 182/217 (83.87%), Postives = 186/217 (85.71%), Query Frame = 0


Query: 1   MVLSQSKLSDPKFGATSSLSLSLSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ 60
           MVLSQSKLSDP  G       +LSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ
Sbjct: 1   MVLSQSKLSDPNSGLP-----ALSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ 60

Query: 61  PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP 120
           PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP
Sbjct: 61  PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP 120

Query: 121 EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVN-----LYN 180
           EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVN     L  
Sbjct: 121 EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEK 180

Query: 181 QFEYFLDVFIK-------WLEDERYGSDKKAKVSIIS 206
           Q   ++D+            EDERYGSDKKAKVSIIS
Sbjct: 181 QSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIIS 212

[Close]

BLAST of MELO3C032955 vs. NCBI nr
Match: XP_011657876.1 (U1 small nuclear ribonucleoprotein A isoform X2 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 2.0e-69
Identity = 143/172 (83.14%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 45  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPH 104
           MDDMTSYYPPPQPPPQPSGLEP HYPYYQVPPPPSAPPSQHYLSQHP TFASY LPLLPH
Sbjct: 1   MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPH 60

Query: 105 TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 164
           TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA
Sbjct: 61  TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 120

Query: 165 VGAMHAVN-----LYNQFEYFLDVFIK-------WLEDERYGSDKKAKVSII 205
           VGAMHAVN     L  Q   ++D+            E+ERYGSDKKAKVSII
Sbjct: 121 VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSII 172

[Close]

BLAST of MELO3C032955 vs. NCBI nr
Match: XP_011657875.1 (U1 small nuclear ribonucleoprotein A isoform X1 [Cucumis sativus] >KGN48541.1 hypothetical protein Csa_002833 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 2.0e-69
Identity = 143/172 (83.14%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 45  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPH 104
           MDDMTSYYPPPQPPPQPSGLEP HYPYYQVPPPPSAPPSQHYLSQHP TFASY LPLLPH
Sbjct: 1   MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPH 60

Query: 105 TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 164
           TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA
Sbjct: 61  TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 120

Query: 165 VGAMHAVN-----LYNQFEYFLDVFIK-------WLEDERYGSDKKAKVSII 205
           VGAMHAVN     L  Q   ++D+            E+ERYGSDKKAKVSII
Sbjct: 121 VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSII 172

[Close]

BLAST of MELO3C032955 vs. ExPASy Swiss-Prot
Match: Q8VC52 (RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-10
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 110 EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMH 169
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F +F  +  A  A +
Sbjct: 23  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKN 82

Query: 170 AVN 173
           A+N
Sbjct: 83  ALN 83

[Close]

BLAST of MELO3C032955 vs. ExPASy Swiss-Prot
Match: Q6ZRY4 (RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.2e-10
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 110 EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMH 169
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++   +  QP  F +F  +  A  A +
Sbjct: 29  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR--QPVGFVIFDSRAGAEAAKN 88

Query: 170 AVN 173
           A+N
Sbjct: 89  ALN 89

[Close]

BLAST of MELO3C032955 vs. ExPASy Swiss-Prot
Match: Q6DH13 (RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 110 EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMH 169
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +
Sbjct: 18  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRSGAEAAKN 77

Query: 170 AVN 173
           A+N
Sbjct: 78  ALN 78

[Close]

BLAST of MELO3C032955 vs. ExPASy Swiss-Prot
Match: Q9W6I1 (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-09
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 110 EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMH 169
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +
Sbjct: 20  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKN 79

Query: 170 AVN 173
           A+N
Sbjct: 80  ALN 80

[Close]

BLAST of MELO3C032955 vs. ExPASy Swiss-Prot
Match: Q9YGP5 (RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-09
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 110 EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMH 169
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F ++  A  A +
Sbjct: 18  EVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAGAEAAKN 77

Query: 170 AVN 173
           A+N
Sbjct: 78  ALN 78

[Close]

BLAST of MELO3C032955 vs. ExPASy TrEMBL
Match: A0A5D3CNE3 (U1 small nuclear ribonucleoprotein A isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004640 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.5e-91
Identity = 187/217 (86.18%), Postives = 190/217 (87.56%), Query Frame = 0


Query: 1   MVLSQSKLSDPKFGATSSLSLSLSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ 60
           MVLSQSK SDPKFGATS    SLSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ
Sbjct: 1   MVLSQSKQSDPKFGATS----SLSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ 60

Query: 61  PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP 120
           PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP
Sbjct: 61  PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP 120

Query: 121 EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVN-----LYN 180
           EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVN     L  
Sbjct: 121 EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEK 180

Query: 181 QFEYFLDVFIK-------WLEDERYGSDKKAKVSIIS 206
           Q   ++D+            EDERYGSDKKAKVSIIS
Sbjct: 181 QSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIIS 213

[Close]

BLAST of MELO3C032955 vs. ExPASy TrEMBL
Match: A0A1S4DUH9 (U1 small nuclear ribonucleoprotein A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484791 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.9e-88
Identity = 182/217 (83.87%), Postives = 186/217 (85.71%), Query Frame = 0


Query: 1   MVLSQSKLSDPKFGATSSLSLSLSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ 60
           MVLSQSKLSDP  G       +LSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ
Sbjct: 1   MVLSQSKLSDPNSGLP-----ALSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ 60

Query: 61  PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP 120
           PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP
Sbjct: 61  PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP 120

Query: 121 EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVN-----LYN 180
           EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVN     L  
Sbjct: 121 EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEK 180

Query: 181 QFEYFLDVFIK-------WLEDERYGSDKKAKVSIIS 206
           Q   ++D+            EDERYGSDKKAKVSIIS
Sbjct: 181 QSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIIS 212

[Close]

BLAST of MELO3C032955 vs. ExPASy TrEMBL
Match: A0A1S3B1E9 (protein WHI4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484791 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.9e-88
Identity = 182/217 (83.87%), Postives = 186/217 (85.71%), Query Frame = 0


Query: 1   MVLSQSKLSDPKFGATSSLSLSLSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ 60
           MVLSQSKLSDP  G       +LSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ
Sbjct: 1   MVLSQSKLSDPNSGLP-----ALSLSLSLSLSLLGQRLGGKSTPMDDMTSYYPPPQPPPQ 60

Query: 61  PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP 120
           PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP
Sbjct: 61  PSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLP 120

Query: 121 EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVN-----LYN 180
           EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVN     L  
Sbjct: 121 EDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVNGMVFDLEK 180

Query: 181 QFEYFLDVFIK-------WLEDERYGSDKKAKVSIIS 206
           Q   ++D+            EDERYGSDKKAKVSIIS
Sbjct: 181 QSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIIS 212

[Close]

BLAST of MELO3C032955 vs. ExPASy TrEMBL
Match: A0A0A0KLD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G491040 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 9.5e-70
Identity = 143/172 (83.14%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 45  MDDMTSYYPPPQPPPQPSGLEPSHYPYYQVPPPPSAPPSQHYLSQHPPTFASYGLPLLPH 104
           MDDMTSYYPPPQPPPQPSGLEP HYPYYQVPPPPSAPPSQHYLSQHP TFASY LPLLPH
Sbjct: 1   MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPH 60

Query: 105 TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 164
           TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA
Sbjct: 61  TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 120

Query: 165 VGAMHAVN-----LYNQFEYFLDVFIK-------WLEDERYGSDKKAKVSII 205
           VGAMHAVN     L  Q   ++D+            E+ERYGSDKKAKVSII
Sbjct: 121 VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSII 172

[Close]

BLAST of MELO3C032955 vs. ExPASy TrEMBL
Match: A0A6J1IQG5 (protein WHI4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477875 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 3.3e-62
Identity = 136/177 (76.84%), Postives = 142/177 (80.23%), Query Frame = 0


Query: 45  MDDMTSYY---PPPQPPPQPSGLEPSHYPYYQVPPPP-SAPPSQHYLSQHPPTFASYGLP 104
           MDD+TSYY   P PQPP QPSGLE  HYPYYQVPPPP SAP SQHYL+QHPPTFASYGLP
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 105 LLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSD 164
            LPH  SINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR+PTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 165 QQSAVGAMHAVN-----LYNQFEYFLDVFIK-------WLEDERYGSDKKAKVSIIS 206
           QQSAVGAMHAVN     L  Q   ++D+            EDERYGSDKKAKVSI S
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRMRTEDERYGSDKKAKVSIFS 177

[Close]

BLAST of MELO3C032955 vs. TAIR 10
Match: AT2G42240.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 109.4 bits (272), Expect = 3.5e-24
Identity = 71/134 (52.99%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 45  MDDMTSYYPPPQPPPQPSGLEPSHY--PYYQVPPPPSAPP----SQHYLSQHPPTFASYG 104
           MDD+ +YY              SHY  P    PPPP   P    S H  S + PT  S G
Sbjct: 1   MDDLEAYY--------------SHYNLPAMVPPPPPGVSPIPITSAH--SVYLPTHVSIG 60

Query: 105 LPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVF 164
                   + +EVRTLF+AGLPEDVKPREIYNLFREFPGYE+SHLR+ +   +PFAFAVF
Sbjct: 61  --------ARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFAVF 109

Query: 165 SDQQSAVGAMHAVN 173
           SD QSAV  MHA+N
Sbjct: 121 SDLQSAVAVMHALN 109

[Close]

BLAST of MELO3C032955 vs. TAIR 10
Match: AT2G42240.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 109.4 bits (272), Expect = 3.5e-24
Identity = 71/134 (52.99%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 45  MDDMTSYYPPPQPPPQPSGLEPSHY--PYYQVPPPPSAPP----SQHYLSQHPPTFASYG 104
           MDD+ +YY              SHY  P    PPPP   P    S H  S + PT  S G
Sbjct: 1   MDDLEAYY--------------SHYNLPAMVPPPPPGVSPIPITSAH--SVYLPTHVSIG 60

Query: 105 LPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVF 164
                   + +EVRTLF+AGLPEDVKPREIYNLFREFPGYE+SHLR+ +   +PFAFAVF
Sbjct: 61  --------ARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFAVF 109

Query: 165 SDQQSAVGAMHAVN 173
           SD QSAV  MHA+N
Sbjct: 121 SDLQSAVAVMHALN 109

[Close]

BLAST of MELO3C032955 vs. TAIR 10
Match: AT2G42240.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 109.4 bits (272), Expect = 3.5e-24
Identity = 71/134 (52.99%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 45  MDDMTSYYPPPQPPPQPSGLEPSHY--PYYQVPPPPSAPP----SQHYLSQHPPTFASYG 104
           MDD+ +YY              SHY  P    PPPP   P    S H  S + PT  S G
Sbjct: 1   MDDLEAYY--------------SHYNLPAMVPPPPPGVSPIPITSAH--SVYLPTHVSIG 60

Query: 105 LPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVF 164
                   + +EVRTLF+AGLPEDVKPREIYNLFREFPGYE+SHLR+ +   +PFAFAVF
Sbjct: 61  --------ARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFAVF 109

Query: 165 SDQQSAVGAMHAVN 173
           SD QSAV  MHA+N
Sbjct: 121 SDLQSAVAVMHALN 109

[Close]

BLAST of MELO3C032955 vs. TAIR 10
Match: AT3G21215.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-10
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 62  SGLEPSH--YPYYQVPPPP-----SAPPSQHYLSQHPPTFASYGLPLL---PHTTSINEV 121
           +G+ P H  +P    PPPP     +APP    +  HPP       P+L    +    +E+
Sbjct: 4   AGIHPYHQQWPPAGAPPPPAAVSSAAPPHPPPIHHHPPP-----PPVLVDNHNRPPYDEL 63

Query: 122 RTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSAVGA 168
           RT+FIAGLP+DVK RE+ NL R  PGYE+S +    +  +P  FA+FS  Q A+ A
Sbjct: 64  RTIFIAGLPDDVKERELLNLLRWLPGYEASQVNFKGE--KPMGFALFSTAQFAMAA 112

[Close]

BLAST of MELO3C032955 vs. TAIR 10
Match: AT3G13700.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-09
Identity = 38/95 (40.00%), Postives = 51/95 (53.68%), Query Frame = 0


Query: 78  PSAPPSQHYLSQHPPTFASYGLPLLPHTTSINEVRTLFIAGLPEDVKPREIYNLFREFPG 137
           P  P   + L  HP       LPLL        + TLF++GLP DVK REI+NLFR   G
Sbjct: 6   PYDPFYVYQLHSHPHHLPPQ-LPLL--ADEPGAINTLFVSGLPNDVKAREIHNLFRRRHG 65

Query: 138 YESSHLRTPTQTTQPFAFAVFSDQQSAVGAMHAVN 173
           +ES  L+   +  Q  AFA F+  + A+ AM+ +N
Sbjct: 66  FESCQLKYTGRGDQVVAFATFTSHRFALAAMNELN 97

The following BLAST results are available for this feature:

BLAST of MELO3C032955 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK12872.1	1.5e-90	86.18	U1 small nuclear ribonucleoprotein A isoform X2 [Cucumis melo var. makuwa]	[more]
XP_016899375.1	1.2e-87	83.87	PREDICTED: U1 small nuclear ribonucleoprotein A isoform X1 [Cucumis melo]	[more]
XP_008440306.2	1.2e-87	83.87	PREDICTED: protein WHI4 isoform X2 [Cucumis melo]	[more]
XP_011657876.1	2.0e-69	83.14	U1 small nuclear ribonucleoprotein A isoform X2 [Cucumis sativus]	[more]
XP_011657875.1	2.0e-69	83.14	U1 small nuclear ribonucleoprotein A isoform X1 [Cucumis sativus] >KGN48541.1 hy...	[more]

BLAST of MELO3C032955 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VC52	6.3e-10	49.21	RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 ...	[more]
Q6ZRY4	8.2e-10	49.21	RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 P...	[more]
Q6DH13	1.1e-09	49.21	RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a...	[more]
Q9W6I1	1.4e-09	49.21	RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 ...	[more]
Q9YGP5	1.4e-09	49.21	RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2...	[more]

BLAST of MELO3C032955 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CNE3	7.5e-91	86.18	U1 small nuclear ribonucleoprotein A isoform X2 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S4DUH9	5.9e-88	83.87	U1 small nuclear ribonucleoprotein A isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3B1E9	5.9e-88	83.87	protein WHI4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484791 PE=4 SV=1	[more]
A0A0A0KLD8	9.5e-70	83.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G491040 PE=4 SV=1	[more]
A0A6J1IQG5	3.3e-62	76.84	protein WHI4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477875 PE=4 SV=1	[more]

BLAST of MELO3C032955 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42240.1	3.5e-24	52.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.2	3.5e-24	52.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.3	3.5e-24	52.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G21215.1	1.7e-10	39.66	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.2	4.2e-09	40.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 113..186 e-value: 4.2E-5 score: 33.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 114..172 e-value: 1.4E-8 score: 34.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 112..205 score: 10.223745
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 107..179 e-value: 1.5E-15 score: 59.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..87
None	No IPR available	PANTHER	PTHR10501:SF43	RNA-BINDING PROTEIN-RELATED	coord: 45..172
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 45..172
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 60..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032955.1	MELO3C032955.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding