MELO3C032945.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C032945.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPre-mRNA-processing factor 39 isoform X3
Locationchr08: 9708681 .. 9708935 (+)
RNA-Seq ExpressionMELO3C032945.jh1
SyntenyMELO3C032945.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAATGTGCGCAAGGCAGTCGCATGCAAGGAAAGAGGTATAAAGAAGATGAAGACGAACACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTGTGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAAATGGTTCAATGGGAAATTTGTTGTATGAAGAAATGCTTCAGTTTATCAGTTTTCTTGTGATGTATTGAGTTTTCTAAAACAGAGTAGTAGTTTTTTGTTTAGGTTTGTTCTCAAA

mRNA sequence

AAGAAATGTGCGCAAGGCAGTCGCATGCAAGGAAAGAGGTATAAAGAAGATGAAGACGAACACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTGTGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAAATGGTTCAATGGGAAATTTGTTGTATGAAGAAATGCTTCAGTTTATCAGTTTTCTTGTGATGTATTGAGTTTTCTAAAACAGAGTAGTAGTTTTTTGTTTAGGTTTGTTCTCAAA

Coding sequence (CDS)

ATGAAGACGAACACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTGTGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAAATGGTTCAATGGGAAATTTGTTGTATGAAGAAATGCTTCAGTTTATCAGTTTTCTTGTGATGTATTGA

Protein sequence

MKTNTVTPYVGHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY
Homology
BLAST of MELO3C032945.jh1 vs. NCBI nr
Match: TYK10342.1 (uncharacterized protein E5676_scaffold367G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 5.02e-26
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1  MKTNTVTPYVGHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY 52
          MKT+TVTPYVGHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY
Sbjct: 17 MKTSTVTPYVGHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY 68

BLAST of MELO3C032945.jh1 vs. NCBI nr
Match: XP_016903219.1 (PREDICTED: uncharacterized protein LOC103502427 isoform X2 [Cucumis melo] >KAA0039695.1 pre-mRNA-processing factor 39 isoform X3 [Cucumis melo var. makuwa] >TYJ96187.1 pre-mRNA-processing factor 39 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 3.99e-14
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 11  GHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY 52
           GHV+RT+LQMNFGFAVI +RNGS GNLLYEEMLQFISFLV+Y
Sbjct: 97  GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 138

BLAST of MELO3C032945.jh1 vs. NCBI nr
Match: XP_016903218.1 (PREDICTED: uncharacterized protein LOC103502427 isoform X1 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 4.58e-14
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 11  GHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY 52
           GHV+RT+LQMNFGFAVI +RNGS GNLLYEEMLQFISFLV+Y
Sbjct: 103 GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 144

BLAST of MELO3C032945.jh1 vs. NCBI nr
Match: KAA0058974.1 (hypothetical protein E6C27_scaffold98G001610 [Cucumis melo var. makuwa] >TYK11007.1 hypothetical protein E5676_scaffold874G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.83e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0

Query: 1  MKTNTVTPYVGHVVRTVLQMNFGFAVISMRNGSMGNLL 38
          MKT+TVTPYVGH VRT+LQMNFGFAVIS+RNGSMGNLL
Sbjct: 27 MKTSTVTPYVGHAVRTMLQMNFGFAVISVRNGSMGNLL 64

BLAST of MELO3C032945.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CGG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00170 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.43e-26
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1  MKTNTVTPYVGHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY 52
          MKT+TVTPYVGHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY
Sbjct: 17 MKTSTVTPYVGHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY 68

BLAST of MELO3C032945.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BAP5 (Pre-mRNA-processing factor 39 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00140 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.93e-14
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 11  GHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY 52
           GHV+RT+LQMNFGFAVI +RNGS GNLLYEEMLQFISFLV+Y
Sbjct: 97  GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 138

BLAST of MELO3C032945.jh1 vs. ExPASy TrEMBL
Match: A0A1S4E4R6 (uncharacterized protein LOC103502427 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502427 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.93e-14
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 11  GHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY 52
           GHV+RT+LQMNFGFAVI +RNGS GNLLYEEMLQFISFLV+Y
Sbjct: 97  GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 138

BLAST of MELO3C032945.jh1 vs. ExPASy TrEMBL
Match: A0A1S4E4Q8 (uncharacterized protein LOC103502427 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502427 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.22e-14
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 11  GHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY 52
           GHV+RT+LQMNFGFAVI +RNGS GNLLYEEMLQFISFLV+Y
Sbjct: 103 GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 144

BLAST of MELO3C032945.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UV27 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00450 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.85e-14
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0

Query: 1  MKTNTVTPYVGHVVRTVLQMNFGFAVISMRNGSMGNLL 38
          MKT+TVTPYVGH VRT+LQMNFGFAVIS+RNGSMGNLL
Sbjct: 27 MKTSTVTPYVGHAVRTMLQMNFGFAVISVRNGSMGNLL 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK10342.15.02e-2698.08uncharacterized protein E5676_scaffold367G00170 [Cucumis melo var. makuwa][more]
XP_016903219.13.99e-1485.71PREDICTED: uncharacterized protein LOC103502427 isoform X2 [Cucumis melo] >KAA00... [more]
XP_016903218.14.58e-1485.71PREDICTED: uncharacterized protein LOC103502427 isoform X1 [Cucumis melo][more]
KAA0058974.11.83e-1389.47hypothetical protein E6C27_scaffold98G001610 [Cucumis melo var. makuwa] >TYK1100... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CGG92.43e-2698.08Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BAP51.93e-1485.71Pre-mRNA-processing factor 39 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S4E4R61.93e-1485.71uncharacterized protein LOC103502427 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E4Q82.22e-1485.71uncharacterized protein LOC103502427 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7UV278.85e-1489.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032945.jh1.t1MELO3C032945.jh1.t1mRNA