MELO3C032924 (gene) Melon (DHL92) v4

Overview


Name	MELO3C032924
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Villin-4-like isoform X4
Location	chr10: 5868653 .. 5868824 (+)
RNA-Seq Expression	MELO3C032924
Synteny	MELO3C032924

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGACATTCGACCATCACAGACGACATTCACGTACAAGCTTTGGCCGCGCCACCACAGGGATATCAATCAACTTGTCGGCACCACCACAGACGACGTTCCCTCCCCTGATGTCCAAACAGACTTTCGCGCAGTAGATCCCCACGAATGGCTGCCCCAACTTCGCTCCACCAC

mRNA sequence

ACGACATTCGACCATCACAGACGACATTCACGTACAAGCTTTGGCCGCGCCACCACAGGGATATCAATCAACTTGTCGGCACCACCACAGACGACGTTCCCTCCCCTGATGTCCAAACAGACTTTCGCGCAGTAGATCCCCACGAATGGCTGCCCCAACTTCGCTCCACCAC

Coding sequence (CDS)

GACATTCGACCATCACAGACGACATTCACGTACAAGCTTTGGCCGCGCCACCACAGGGATATCAATCAACTTGTCGGCACCACCACAGACGACGTTCCCTCCCCTGATGTCCAAACAGACTTTCGCGCAGTAGATCCCCACGAATGGCTGCCCCAACTTCGCTCCACC

Protein sequence

DIRPSQTTFTYKLWPRHHRDINQLVGTTTDDVPSPDVQTDFRAVDPHEWLPQLRST

Homology

[Close]

BLAST of MELO3C032924 vs. NCBI nr
Match: TYK01158.1 (amino acid permease 6 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 3.9e-12
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1   DIRPSQTTFTYKLWPRHHRDINQLVGTTTDDVPSPDV 38
           DIRPSQTTFTYKLWPRHHRDIN+LVG TTDDVPSPDV
Sbjct: 355 DIRPSQTTFTYKLWPRHHRDINRLVGATTDDVPSPDV 391

[Close]

BLAST of MELO3C032924 vs. NCBI nr
Match: KAA0047162.1 (villin-4-like isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 3.9e-12
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1   DIRPSQTTFTYKLWPRHHRDINQLVGTTTDDVPSPDV 38
           DIRPSQTTFTYKLWPRHHRDIN+LVG TTDDVPSPDV
Sbjct: 355 DIRPSQTTFTYKLWPRHHRDINRLVGATTDDVPSPDV 391

[Close]

BLAST of MELO3C032924 vs. NCBI nr
Match: KAA0043191.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 2.5e-11
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1   DIRPSQTTFTYKLWPRHHRDINQLVGTTTDDVPSPDV 38
           DIRPSQTTFTYKLWPRHH+DINQLVG TTD VPSPDV
Sbjct: 236 DIRPSQTTFTYKLWPRHHKDINQLVGATTDAVPSPDV 272

[Close]

BLAST of MELO3C032924 vs. NCBI nr
Match: KAA0038393.1 (methylenetetrahydrofolate reductase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 5.5e-06
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 1  DIRPSQTTFTYKLWPRHHRDINQLVG 27
          DIRPSQTTFTYKLWPRHHRDIN+LVG
Sbjct: 25 DIRPSQTTFTYKLWPRHHRDINRLVG 50

[Close]

BLAST of MELO3C032924 vs. ExPASy TrEMBL
Match: A0A5A7TUM2 (Villin-4-like isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83G00340 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-12
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1   DIRPSQTTFTYKLWPRHHRDINQLVGTTTDDVPSPDV 38
           DIRPSQTTFTYKLWPRHHRDIN+LVG TTDDVPSPDV
Sbjct: 355 DIRPSQTTFTYKLWPRHHRDINRLVGATTDDVPSPDV 391

[Close]

BLAST of MELO3C032924 vs. ExPASy TrEMBL
Match: A0A5D3BQ26 (Amino acid permease 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold109G00380 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-12
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1   DIRPSQTTFTYKLWPRHHRDINQLVGTTTDDVPSPDV 38
           DIRPSQTTFTYKLWPRHHRDIN+LVG TTDDVPSPDV
Sbjct: 355 DIRPSQTTFTYKLWPRHHRDINRLVGATTDDVPSPDV 391

[Close]

BLAST of MELO3C032924 vs. ExPASy TrEMBL
Match: A0A5A7TNM4 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00600 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1   DIRPSQTTFTYKLWPRHHRDINQLVGTTTDDVPSPDV 38
           DIRPSQTTFTYKLWPRHH+DINQLVG TTD VPSPDV
Sbjct: 236 DIRPSQTTFTYKLWPRHHKDINQLVGATTDAVPSPDV 272

[Close]

BLAST of MELO3C032924 vs. ExPASy TrEMBL
Match: A0A5A7T632 (Methylenetetrahydrofolate reductase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002820 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-06
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 1  DIRPSQTTFTYKLWPRHHRDINQLVG 27
          DIRPSQTTFTYKLWPRHHRDIN+LVG
Sbjct: 25 DIRPSQTTFTYKLWPRHHRDINRLVG 50

The following BLAST results are available for this feature:

BLAST of MELO3C032924 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01158.1	3.9e-12	94.59	amino acid permease 6 [Cucumis melo var. makuwa]	[more]
KAA0047162.1	3.9e-12	94.59	villin-4-like isoform X4 [Cucumis melo var. makuwa]	[more]
KAA0043191.1	2.5e-11	91.89	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0038393.1	5.5e-06	96.15	methylenetetrahydrofolate reductase 2 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C032924 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032924 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TUM2	1.9e-12	94.59	Villin-4-like isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3BQ26	1.9e-12	94.59	Amino acid permease 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10...	[more]
A0A5A7TNM4	1.2e-11	91.89	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G...	[more]
A0A5A7T632	2.7e-06	96.15	Methylenetetrahydrofolate reductase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of MELO3C032924 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032924.1	MELO3C032924.1	mRNA