MELO3C032898 (gene) Melon (DHL92) v4

Overview


Name	MELO3C032898
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	protein SKIP34
Location	chr08: 4815847 .. 4816653 (-)
RNA-Seq Expression	MELO3C032898
Synteny	MELO3C032898

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCAACCCAAGATCCGTTTGACCATAAGATTCAAGAAGTCAAAATTCATCCTCAGAATTCAGAGCATCCACAAGGATTCCATTTGTCTATCCAAATACCGATTCATCTCTCTTTCCGGCGATCGTCGATTTTCAGTCTCCGCCATGTGTAACGGCCACCACCGACCATTGTTCAGAGGTAGCCCTCCTCCATACCAGACCTCCGTACCGGAAAACGGCGCCGCATCCGTTGTGGACAACCTACGGGGCCGATTAGAAGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGGTTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAGCGACCGTCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTCGAAAATAAAAATTCCTCTTCGCCGTCGGTGTCTATAATTTTAGCAGTACCATCCAAAACTCGTTTTGTTTACTTGCATCTTCGCTCTTCTCACTCTCAATCCTCGTAGATTGTAATCACCACCAAATGTATGGATTTATTCGTCCTAGATTTCTCTTGTGAATGGAATCGTGGAATCGATATCATTGGCTTGCTCAATCGATGGAGATTTTCAGTTTTTTTGAATGAGAGCGAGTTGCAAATCGCTTAGACGATCATTTTGTTGTTTCTTGATGGAATATATGGCAGTTTTCTGTAATCCAATTAGTCATATTGTATGTATTTCTCAGATTAACGTTGGTTTTAATAGGTTTTTAAATGAAACTTATGTGCAATTCATCT

mRNA sequence

ACCCAACCCAAGATCCGTTTGACCATAAGATTCAAGAAGTCAAAATTCATCCTCAGAATTCAGAGCATCCACAAGGATTCCATTTGTCTATCCAAATACCGATTCATCTCTCTTTCCGGCGATCGTCGATTTTCAGTCTCCGCCATGTGTAACGGCCACCACCGACCATTGTTCAGAGGTAGCCCTCCTCCATACCAGACCTCCGTACCGGAAAACGGCGCCGCATCCGTTGTGGACAACCTACGGGGCCGATTAGAAGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGGTTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAGCGACCGTCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTCGAAAATAAAAATTCCTCTTCGCCGTCGGTGTCTATAATTTTAGCAGTACCATCCAAAACTCGTTTTGTTTACTTGCATCTTCGCTCTTCTCACTCTCAATCCTCGTAGATTGTAATCACCACCAAATGTATGGATTTATTCGTCCTAGATTTCTCTTGTGAATGGAATCGTGGAATCGATATCATTGGCTTGCTCAATCGATGGAGATTTTCAGTTTTTTTGAATGAGAGCGAGTTGCAAATCGCTTAGACGATCATTTTGTTGTTTCTTGATGGAATATATGGCAGTTTTCTGTAATCCAATTAGTCATATTGTATGTATTTCTCAGATTAACGTTGGTTTTAATAGGTTTTTAAATGAAACTTATGTGCAATTCATCT

Coding sequence (CDS)

ACCCAACCCAAGATCCGTTTGACCATAAGATTCAAGAAGTCAAAATTCATCCTCAGAATTCAGAGCATCCACAAGGATTCCATTTGTCTATCCAAATACCGATTCATCTCTCTTTCCGGCGATCGTCGATTTTCAGTCTCCGCCATGTGTAACGGCCACCACCGACCATTGTTCAGAGGTAGCCCTCCTCCATACCAGACCTCCGTACCGGAAAACGGCGCCGCATCCGTTGTGGACAACCTACGGGGCCGATTAGAAGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGGTTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAGCGACCGTCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTCGAAAATAA

Protein sequence

TQPKIRLTIRFKKSKFILRIQSIHKDSICLSKYRFISLSGDRRFSVSAMCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK

Homology

[Close]

BLAST of MELO3C032898 vs. NCBI nr
Match: XP_008440533.1 (PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis melo var. makuwa] >TYK12742.1 protein SKIP34 [Cucumis melo var. makuwa])

HSP 1 Score: 186.0 bits (471), Expect = 2.2e-43
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 49  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 108
           MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1   MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 109 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 145
           MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Sbjct: 61  MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of MELO3C032898 vs. NCBI nr
Match: XP_011657944.1 (protein SKIP34 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 9.3e-42
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 49  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 108
           MCNGHHRPLFRGS PPYQTSVPENGA SVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1   MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 109 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 145
           MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Sbjct: 61  MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of MELO3C032898 vs. NCBI nr
Match: KAE8647547.1 (hypothetical protein Csa_002974 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 6.9e-37
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 49  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 108
           MCNGHHRPLFRGS PPYQTSVPENGA SVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1   MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 109 MKRLVSVMEILENYLKRQYSDRQEYVV 136
           MKRLVSVMEILENYLKRQYSDRQEYV+
Sbjct: 61  MKRLVSVMEILENYLKRQYSDRQEYVI 87

[Close]

BLAST of MELO3C032898 vs. NCBI nr
Match: XP_022950522.1 (protein SKIP34 [Cucurbita moschata])

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-34
Identity = 86/97 (88.66%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 49  MCNGHHRPLFRGSPPPYQTSVPENGA-ASVVDNLRGRLEETELRLAQVRAREAELSRLLE 108
           MCNGHHR LFRGS  P QTSVPENG  ASVVDNLRGRL ETE RLAQVRAREA LSRLLE
Sbjct: 1   MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60

Query: 109 EMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 145
           EMKRLVSVMEILENYLKR+YSDRQEYVVRLL+PVSRK
Sbjct: 61  EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVSRK 97

[Close]

BLAST of MELO3C032898 vs. NCBI nr
Match: XP_023544310.1 (protein SKIP34 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.6 bits (392), Expect = 3.2e-34
Identity = 83/96 (86.46%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 49  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 108
           MCNGHHR LFRG+  P QTSVPENG ASVVDNLRGRL ETE RLAQVRAREA LSRLLEE
Sbjct: 1   MCNGHHRSLFRGTISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRLLEE 60

Query: 109 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 145
           MKRLV VMEILENYLKR+Y DRQEYVVRLL+PVSRK
Sbjct: 61  MKRLVCVMEILENYLKRRYRDRQEYVVRLLAPVSRK 96

[Close]

BLAST of MELO3C032898 vs. ExPASy Swiss-Prot
Match: Q8GWU7 (Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-15
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 49  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 108
           MC GH++ L   S    ++   E+   SVVD+LR RL ETE RL + RAREAELSR LE 
Sbjct: 1   MCYGHNQSLSSRSSLRRRSHDGEDD--SVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 109 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 145
           MKR VSVMEI+E +L+R++ ++++ + RL SPVS K
Sbjct: 61  MKRFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94

[Close]

BLAST of MELO3C032898 vs. ExPASy TrEMBL
Match: A0A5D3CN14 (Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003300 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.1e-43
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 49  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 108
           MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1   MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 109 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 145
           MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Sbjct: 61  MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of MELO3C032898 vs. ExPASy TrEMBL
Match: A0A1S3B1B8 (protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.1e-43
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 49  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 108
           MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1   MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 109 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 145
           MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Sbjct: 61  MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of MELO3C032898 vs. ExPASy TrEMBL
Match: A0A0A0KIR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.5e-42
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 49  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 108
           MCNGHHRPLFRGS PPYQTSVPENGA SVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1   MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 109 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 145
           MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK
Sbjct: 61  MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 96

[Close]

BLAST of MELO3C032898 vs. ExPASy TrEMBL
Match: A0A6J1GF20 (protein SKIP34 OS=Cucurbita moschata OX=3662 GN=LOC111453605 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 7.0e-35
Identity = 86/97 (88.66%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 49  MCNGHHRPLFRGSPPPYQTSVPENGA-ASVVDNLRGRLEETELRLAQVRAREAELSRLLE 108
           MCNGHHR LFRGS  P QTSVPENG  ASVVDNLRGRL ETE RLAQVRAREA LSRLLE
Sbjct: 1   MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60

Query: 109 EMKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 145
           EMKRLVSVMEILENYLKR+YSDRQEYVVRLL+PVSRK
Sbjct: 61  EMKRLVSVMEILENYLKRRYSDRQEYVVRLLAPVSRK 97

[Close]

BLAST of MELO3C032898 vs. ExPASy TrEMBL
Match: A0A6J1IV54 (protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.0e-34
Identity = 82/96 (85.42%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 49  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 108
           MCNGHHR LFRGS  P QTSVPENG ASVVDNLRGRL ETE RLAQVRAREA LSR+LEE
Sbjct: 1   MCNGHHRSLFRGSISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRILEE 60

Query: 109 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 145
           MKRLVSVMEIL+NYLKR+Y DRQEYVVRLL+P+SRK
Sbjct: 61  MKRLVSVMEILKNYLKRRYRDRQEYVVRLLAPLSRK 96

[Close]

BLAST of MELO3C032898 vs. TAIR 10
Match: AT5G65495.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-16
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 49  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 108
           MC GH++ L   S    ++   E+   SVVD+LR RL ETE RL + RAREAELSR LE 
Sbjct: 1   MCYGHNQSLSSRSSLRRRSHDGEDD--SVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 109 MKRLVSVMEILENYLKRQYSDRQEYVVRLLSPVSRK 145
           MKR VSVMEI+E +L+R++ ++++ + RL SPVS K
Sbjct: 61  MKRFVSVMEIIETFLERRFQEQKDRIARLFSPVSTK 94

The following BLAST results are available for this feature:

BLAST of MELO3C032898 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440533.1	2.2e-43	100.00	PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis m...	[more]
XP_011657944.1	9.3e-42	97.92	protein SKIP34 [Cucumis sativus]	[more]
KAE8647547.1	6.9e-37	96.55	hypothetical protein Csa_002974 [Cucumis sativus]	[more]
XP_022950522.1	1.4e-34	88.66	protein SKIP34 [Cucurbita moschata]	[more]
XP_023544310.1	3.2e-34	86.46	protein SKIP34 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C032898 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWU7	1.6e-15	52.08	Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1	[more]

BLAST of MELO3C032898 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CN14	1.1e-43	100.00	Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00330...	[more]
A0A1S3B1B8	1.1e-43	100.00	protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1	[more]
A0A0A0KIR5	4.5e-42	97.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1	[more]
A0A6J1GF20	7.0e-35	88.66	protein SKIP34 OS=Cucurbita moschata OX=3662 GN=LOC111453605 PE=4 SV=1	[more]
A0A6J1IV54	2.0e-34	85.42	protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1	[more]

BLAST of MELO3C032898 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65495.1	1.1e-16	52.08	unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 78..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032898.1	MELO3C032898.1	mRNA