MELO3C032849 (gene) Melon (DHL92) v4

Overview


Name	MELO3C032849
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Stress-associated endoplasmic reticulum protein 2-like
Location	chr07: 24603913 .. 24604384 (+)
RNA-Seq Expression	MELO3C032849
Synteny	MELO3C032849

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTGTTTCCGAAAACAGCCACGAAACAAAAAATCCTGTTTGTTCATTGATAAATCTCAAGAATTCTTGGTAATCTGAAGAATTCGTCTCCATTTTTCTGATCCAAATCTCATTTGCGCCTCCCGGATCATCCTCTCAAAAATGGTATTTTCCTTTCCCTCCCTTCTTTGAGTTAATTCTTCGTCCTTACCCTTGATTTTTTCCTCTCTAGGGTTTTCTATTTGAGCTATGATCGATGCTGATTTCGATTTGTGTGGGTTTATGATTTGATTGATGGGTTTTGTAGACGACATCGCGGCGTCTTGCGGATCGGAAGGTGGAGAGGTTTGAGAAGAACATTTTGAAGAGAGGGGCTGTGCCTGAGACTGCTACTAAGAAGGGAAAAGATTACCCTGTTGGCCCTATTCTTCTTGGATTCTTCGTTTTTGTCGTCATTGGATCATGTGAGTGTTACATTCTGGAATGCTAA

mRNA sequence

ATGTATTGTTTCCGAAAACAGCCACGAAACAAAAAATCCTGTTTGTTCATTGATAAATCTCAAGAATTCTTGACGACATCGCGGCGTCTTGCGGATCGGAAGGTGGAGAGGTTTGAGAAGAACATTTTGAAGAGAGGGGCTGTGCCTGAGACTGCTACTAAGAAGGGAAAAGATTACCCTGTTGGCCCTATTCTTCTTGGATTCTTCGTTTTTGTCGTCATTGGATCATGTGAGTGTTACATTCTGGAATGCTAA

Coding sequence (CDS)

ATGTATTGTTTCCGAAAACAGCCACGAAACAAAAAATCCTGTTTGTTCATTGATAAATCTCAAGAATTCTTGACGACATCGCGGCGTCTTGCGGATCGGAAGGTGGAGAGGTTTGAGAAGAACATTTTGAAGAGAGGGGCTGTGCCTGAGACTGCTACTAAGAAGGGAAAAGATTACCCTGTTGGCCCTATTCTTCTTGGATTCTTCGTTTTTGTCGTCATTGGATCATGTGAGTGTTACATTCTGGAATGCTAA

Protein sequence

MYCFRKQPRNKKSCLFIDKSQEFLTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGSCECYILEC

Homology

[Close]

BLAST of MELO3C032849 vs. NCBI nr
Match: KAG7029119.1 (Stress-associated endoplasmic reticulum protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-21
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 24 LTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGSCECYI 82
          +TTSRR ADRKVERFEKNILKRGAVPETATKKGKDYPVGP+LLGFFVFVVIGSCE ++
Sbjct: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFL 58

[Close]

BLAST of MELO3C032849 vs. NCBI nr
Match: TYK28997.1 (KH domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 4.5e-20
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 16 FIDKSQEFLTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIG 75
          F+  S    TTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIG
Sbjct: 36 FVVSSDPHQTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIG 95

Query: 76 S 77
          S
Sbjct: 96 S 96

[Close]

BLAST of MELO3C032849 vs. NCBI nr
Match: XP_038900855.1 (stress-associated endoplasmic reticulum protein 2-like [Benincasa hispida])

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 24 LTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGS 77
          +TTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGS
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGS 53

[Close]

BLAST of MELO3C032849 vs. NCBI nr
Match: XP_004152134.1 (stress-associated endoplasmic reticulum protein 2 [Cucumis sativus] >KGN53016.1 hypothetical protein Csa_015278 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 24 LTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGS 77
          +TTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGS
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGS 53

[Close]

BLAST of MELO3C032849 vs. NCBI nr
Match: KAA0025405.1 (stress-associated endoplasmic reticulum protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-19
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 16 FIDKSQEFLTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIG 75
          F+  S    TTSRRLADRKVERFEKNILKRGAVPETA KKGKDYPVGPILLGFFVFVVIG
Sbjct: 36 FVVSSDPHQTTSRRLADRKVERFEKNILKRGAVPETAIKKGKDYPVGPILLGFFVFVVIG 95

Query: 76 S 77
          S
Sbjct: 96 S 96

[Close]

BLAST of MELO3C032849 vs. ExPASy Swiss-Prot
Match: Q3T073 (Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.6e-04
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 36 ERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGSCECYILE 84
          E+  KNI +RG V +T   + + YPVGP LL  FVFVV GS    I++
Sbjct: 12 EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQ 59

[Close]

BLAST of MELO3C032849 vs. ExPASy Swiss-Prot
Match: Q8N6R1 (Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SERP2 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.6e-04
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 36 ERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGSCECYILE 84
          E+  KNI +RG V +T   + + YPVGP LL  FVFVV GS    I++
Sbjct: 12 EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQ 59

[Close]

BLAST of MELO3C032849 vs. ExPASy Swiss-Prot
Match: Q6TAW2 (Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Serp2 PE=3 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 3.6e-04
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 36 ERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGSCECYILE 84
          E+  KNI +RG V +T   + + YPVGP LL  FVFVV GS    I++
Sbjct: 12 EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQ 59

[Close]

BLAST of MELO3C032849 vs. ExPASy TrEMBL
Match: A0A5D3DYM9 (KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001010 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.2e-20
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 16 FIDKSQEFLTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIG 75
          F+  S    TTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIG
Sbjct: 36 FVVSSDPHQTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIG 95

Query: 76 S 77
          S
Sbjct: 96 S 96

[Close]

BLAST of MELO3C032849 vs. ExPASy TrEMBL
Match: A0A0A0KYW0 (Stress associated endoplasmic reticulum protein OS=Cucumis sativus OX=3659 GN=Csa_4G011630 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.3e-20
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 24 LTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGS 77
          +TTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGS
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGS 53

[Close]

BLAST of MELO3C032849 vs. ExPASy TrEMBL
Match: A0A5A7SLR3 (Stress-associated endoplasmic reticulum protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00420 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 16 FIDKSQEFLTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIG 75
          F+  S    TTSRRLADRKVERFEKNILKRGAVPETA KKGKDYPVGPILLGFFVFVVIG
Sbjct: 36 FVVSSDPHQTTSRRLADRKVERFEKNILKRGAVPETAIKKGKDYPVGPILLGFFVFVVIG 95

Query: 76 S 77
          S
Sbjct: 96 S 96

[Close]

BLAST of MELO3C032849 vs. ExPASy TrEMBL
Match: A0A6J1E2H1 (stress-associated endoplasmic reticulum protein 2-like OS=Momordica charantia OX=3673 GN=LOC111025407 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 24 LTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGS 77
          +TTSRRLADRKVERFEKNILKRG+VPETATKKGKDYPVGPILLGFFVFVVIGS
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGSVPETATKKGKDYPVGPILLGFFVFVVIGS 53

[Close]

BLAST of MELO3C032849 vs. ExPASy TrEMBL
Match: A0A6J1EX45 (stress-associated endoplasmic reticulum protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439082 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 22 EFLTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGS 77
          +F TTSRR ADRKVERFEKNILKRGAVPETATKKGKDYPVGP+LLGFFVFVVIGS
Sbjct: 7  KFQTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGS 61

[Close]

BLAST of MELO3C032849 vs. TAIR 10
Match: AT1G27350.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 98.6 bits (244), Expect = 2.5e-21
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 24 LTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGS 77
          +TTS+RLADRK+E+F+KNILKRG VPET TKKGKDYPVGPILLGFFVFVVIGS
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGS 53

[Close]

BLAST of MELO3C032849 vs. TAIR 10
Match: AT1G27330.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 98.6 bits (244), Expect = 2.5e-21
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 24 LTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGS 77
          +TTS+RLADRK+E+F+KNILKRG VPET TKKGKDYPVGPILLGFFVFVVIGS
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGS 53

The following BLAST results are available for this feature:

BLAST of MELO3C032849 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029119.1	9.0e-21	89.66	Stress-associated endoplasmic reticulum protein 2, partial [Cucurbita argyrosper...	[more]
TYK28997.1	4.5e-20	88.52	KH domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_038900855.1	1.3e-19	98.11	stress-associated endoplasmic reticulum protein 2-like [Benincasa hispida]	[more]
XP_004152134.1	1.3e-19	98.11	stress-associated endoplasmic reticulum protein 2 [Cucumis sativus] >KGN53016.1 ...	[more]
KAA0025405.1	2.2e-19	86.89	stress-associated endoplasmic reticulum protein 2-like [Cucumis melo var. makuwa...	[more]

BLAST of MELO3C032849 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3T073	3.6e-04	47.92	Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2...	[more]
Q8N6R1	3.6e-04	47.92	Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SER...	[more]
Q6TAW2	3.6e-04	47.92	Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Se...	[more]

BLAST of MELO3C032849 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYM9	2.2e-20	88.52	KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0KYW0	6.3e-20	98.11	Stress associated endoplasmic reticulum protein OS=Cucumis sativus OX=3659 GN=Cs...	[more]
A0A5A7SLR3	1.1e-19	86.89	Stress-associated endoplasmic reticulum protein 2-like OS=Cucumis melo var. maku...	[more]
A0A6J1E2H1	1.4e-19	96.23	stress-associated endoplasmic reticulum protein 2-like OS=Momordica charantia OX...	[more]
A0A6J1EX45	1.4e-19	92.73	stress-associated endoplasmic reticulum protein 2-like isoform X1 OS=Cucurbita m...	[more]

BLAST of MELO3C032849 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27350.1	2.5e-21	86.79	Ribosome associated membrane protein RAMP4	[more]
AT1G27330.1	2.5e-21	86.79	Ribosome associated membrane protein RAMP4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010580	Stress-associated endoplasmic reticulum protein	PFAM	PF06624	RAMP4	coord: 28..76 e-value: 1.3E-19 score: 69.9
IPR010580	Stress-associated endoplasmic reticulum protein	PANTHER	PTHR15601	STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4	coord: 25..79
None	No IPR available	PANTHER	PTHR15601:SF23	OS11G0637501 PROTEIN	coord: 25..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032849.1	MELO3C032849.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005783	endoplasmic reticulum