MELO3C032813.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C032813.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	heat shock factor-binding protein 1
Location	chr07: 22099004 .. 22100436 (+)
RNA-Seq Expression	MELO3C032813.jh1
Synteny	MELO3C032813.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATAAGTAAAACATTTGCTGCTAGTGGTTTAGGTGCCATAGTTCTTGTTCCTGGTGAAGGTTGCTTTATAGGTTGGTGTTTAGAGGGGTAGATGGGGACTTAGTTTAAGATTTCCACGTGAGAAAGAATACAGATCAACTCACCTGTGTTTAGTTTGTAGATGATAGATGATATTGTTCTTGTTAACTTTAACCAGGTCCTGGATATCTTTGATGTCAATATTTGGCATAAAGGTGTCTCGAAGAAGTATTTTTTTGGAGTTGTTTGTTATGCCTTCCACGTTTGTTAGGCTTAGGTAGGCTAGGCTGGTGGAGTTTAAAGTTTCTTATTTGCTCTATGGCTATTTGGGTTTTTTTATGAATTCACAATCCTCTGTCGTTTTTTGTTTTAGCTTTGTTGTGGGAAAGGTTGAAATGATTTTGTTTTAACTTCCAATAAGTTAGCTTTGTTTTTTGTTTTAGCTTTGTTGTGGCCAAGACATCAGTTTTCAAGGTTGTTTTAATCACTATTTATTTTTGGTGTTCTACTGATTTCTGTTCCCTCAATAGTTTTACAGCTTCCCGATCTGATTGTTAAATGTAATTGTAACAAGCTTGATCTTAATTCTTTTTCAGGATTGTCACCCTCCACCTCCAGTGATTCTTAATTGTTTGACTTATTATTATTATTCGTGTTATTTGGCTGGTTTGTTTCATTGTATAAGTTTGTGAAATGCACATTTTACTTTTTCATCTTGTAGGATGGGCACAGCTCCGAAGATGCAAAACTTTATCTTCTTCAACAAATGGTGAGTTTTAGTTAGTGTAAGTTTCTGTCAGAGAAATTTATGTCTAACAAAATCTTTTTTATGCAGCAATCTAGGTTCCAAACCATGTCCGACTCCATTATCACAAAGAATATCCTTTCGAAATACTTATATTTATTTTTAGCATTTCCCTAAAGTTGTAATTATCATGAGTAATTTTTTCTGATAGGCTTGCATACATTTTGAGTTTTAAGTTCTGCAAAATAGATCATATAATTATTTATTTATTAATATAGGCTAGATTAGTGCAATTTTTTGAGTATTATCATTTTTCTTATCACTCTAGCTAACAATGATCTAGTAAAAGTTGCATATAGTTGAAACATTCTTATAGAGGAAAAATATTAATGATTTTGAAATGGATTGATTGAATACAATTTTGGGTTTGAGATACATTGAAAGAGAAGTAGATTGTAGGATAGCTTTATTGTTATAAGTTAACTTATAGTAAATAAGCTTTCTTTAACTTGAATATACGCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAATGACCTAAAGGTCGAGATGGGTGTTGAGGGCTCTCCGTCGCCACTACTTCCATCAAAGTCAGTTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTAG

mRNA sequence

ATGGGTATAAGTAAAACATTTGCTGCTAGTGGTTTAGGTGCCATAGTTCTTGTTCCTGGTGAAGGTTGCTTTATAGGATGGGCACAGCTCCGAAGATGCAAAACTTTATCTTCTTCAACAAATGCTTTCTTTAACTTGAATATACGCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAATGACCTAAAGGTCGAGATGGGTGTTGAGGGCTCTCCGTCGCCACTACTTCCATCAAAGTCAGTTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTAG

Coding sequence (CDS)

ATGGGTATAAGTAAAACATTTGCTGCTAGTGGTTTAGGTGCCATAGTTCTTGTTCCTGGTGAAGGTTGCTTTATAGGATGGGCACAGCTCCGAAGATGCAAAACTTTATCTTCTTCAACAAATGCTTTCTTTAACTTGAATATACGCGATGAGATGGGGAGCCGCATAAATGAATTGGAGCAGAGCATCAATGACCTAAAGGTCGAGATGGGTGTTGAGGGCTCTCCGTCGCCACTACTTCCATCAAAGTCAGTTGCAGATGAAGTGAAGAAAGATGAAGGTTCTGCCTAG

Protein sequence

MGISKTFAASGLGAIVLVPGEGCFIGWAQLRRCKTLSSSTNAFFNLNIRDEMGSRINELEQSINDLKVEMGVEGSPSPLLPSKSVADEVKKDEGSA

Homology

[Close]

BLAST of MELO3C032813.jh1 vs. NCBI nr
Match: XP_008451602.1 (PREDICTED: heat shock factor-binding protein 1 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.98e-20
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 50 DEMGSRINELEQSINDLKVEMGVEGSPSPLLPSKSVADEVKKDEGSA 96
          DEMGSRINELEQSINDLK EMGVEGSPSPL PSKSVADEVKKDEGSA
Sbjct: 43 DEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 89

[Close]

BLAST of MELO3C032813.jh1 vs. NCBI nr
Match: XP_004136040.1 (heat shock factor-binding protein isoform X2 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 1.14e-19
Identity = 44/47 (93.62%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 50 DEMGSRINELEQSINDLKVEMGVEGSPSPLLPSKSVADEVKKDEGSA 96
          DEMGSRINELEQSINDLK EMGVEGSPSPL PSK VADEVKKDEGSA
Sbjct: 43 DEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKPVADEVKKDEGSA 89

[Close]

BLAST of MELO3C032813.jh1 vs. NCBI nr
Match: KAG7014376.1 (hypothetical protein SDJN02_24553 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.9 bits (211), Expect = 1.33e-19
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 48 IRDEMGSRINELEQSINDLKVEMGVEGSPSPLLPSKSVADEVKKDEGSA 96
          I DEMGSRINELEQSINDLK EMGVEGSPSP+ PSKS ADEVKKDEGSA
Sbjct: 32 ILDEMGSRINELEQSINDLKSEMGVEGSPSPMTPSKSSADEVKKDEGSA 80

[Close]

BLAST of MELO3C032813.jh1 vs. NCBI nr
Match: XP_004136039.1 (heat shock factor-binding protein isoform X1 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.46e-19
Identity = 50/72 (69.44%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 25  IGWAQLRRCKTLSSSTNAFFNLNIRDEMGSRINELEQSINDLKVEMGVEGSPSPLLPSKS 84
           I + Q  R +T+S S      +   DEMGSRINELEQSINDLK EMGVEGSPSPL PSK 
Sbjct: 45  IFFMQQSRFQTMSDSI-----ITKIDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKP 104

Query: 85  VADEVKKDEGSA 96
           VADEVKKDEGSA
Sbjct: 105 VADEVKKDEGSA 111

[Close]

BLAST of MELO3C032813.jh1 vs. NCBI nr
Match: XP_022991819.1 (heat shock factor-binding protein 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 85.1 bits (209), Expect = 3.43e-19
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 50 DEMGSRINELEQSINDLKVEMGVEGSPSPLLPSKSVADEVKKDEGSA 96
          DEMGSRINELEQSINDLK EMGVEGSPSP+ PSKS ADEVKKDEGSA
Sbjct: 43 DEMGSRINELEQSINDLKSEMGVEGSPSPMTPSKSSADEVKKDEGSA 89

[Close]

BLAST of MELO3C032813.jh1 vs. ExPASy Swiss-Prot
Match: Q8GW48 (Heat shock factor-binding protein OS=Arabidopsis thaliana OX=3702 GN=HSBP PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.8e-06
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 50 DEMGSRINELEQSINDLKVEMGVEGSPSPLLPSKSVADEVKKDEGSA 97
          D+MG RINELEQSINDL+ EMGVEG+P P   SKS  DE K    S+
Sbjct: 43 DDMGGRINELEQSINDLRAEMGVEGTPPP--ASKS-GDEPKTPASSS 86

[Close]

BLAST of MELO3C032813.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BSN9 (heat shock factor-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103492833 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.57e-21
Identity = 45/47 (95.74%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 50 DEMGSRINELEQSINDLKVEMGVEGSPSPLLPSKSVADEVKKDEGSA 96
          DEMGSRINELEQSINDLK EMGVEGSPSPL PSKSVADEVKKDEGSA
Sbjct: 43 DEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 89

[Close]

BLAST of MELO3C032813.jh1 vs. ExPASy TrEMBL
Match: A0A6J1JVW1 (heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488351 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.66e-19
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 50 DEMGSRINELEQSINDLKVEMGVEGSPSPLLPSKSVADEVKKDEGSA 96
          DEMGSRINELEQSINDLK EMGVEGSPSP+ PSKS ADEVKKDEGSA
Sbjct: 43 DEMGSRINELEQSINDLKSEMGVEGSPSPMTPSKSSADEVKKDEGSA 89

[Close]

BLAST of MELO3C032813.jh1 vs. ExPASy TrEMBL
Match: A0A6J1GMG8 (heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455787 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.66e-19
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 50 DEMGSRINELEQSINDLKVEMGVEGSPSPLLPSKSVADEVKKDEGSA 96
          DEMGSRINELEQSINDLK EMGVEGSPSP+ PSKS ADEVKKDEGSA
Sbjct: 43 DEMGSRINELEQSINDLKSEMGVEGSPSPMTPSKSSADEVKKDEGSA 89

[Close]

BLAST of MELO3C032813.jh1 vs. ExPASy TrEMBL
Match: A0A5C7I294 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010451 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.36e-19
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 35  TLSSSTNAFFNLNIRDEMGSRINELEQSINDLKVEMGVEGSPSPLLPSKSVADEVKKDEG 94
           TLS   + F N N+ DEMG RINELEQSINDL+ EMGVEGSPSPL PSK+ + +VK++EG
Sbjct: 56  TLSLEFSGFLNFNVLDEMGGRINELEQSINDLRAEMGVEGSPSPLAPSKTKSGDVKQEEG 115

Query: 95  SA 96
           SA
Sbjct: 116 SA 117

[Close]

BLAST of MELO3C032813.jh1 vs. ExPASy TrEMBL
Match: A0A6A1URS6 (Heat shock factor-binding protein 1 OS=Morella rubra OX=262757 GN=CJ030_MR8G002054 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.05e-17
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 50 DEMGSRINELEQSINDLKVEMGVEGSPSPLLPSKSVADEVKKDEGSA 96
          DEMGSRINELEQSINDL+ EMGVEGSPSP+ PSK ++DEVKK+EG A
Sbjct: 43 DEMGSRINELEQSINDLRAEMGVEGSPSPMAPSKQISDEVKKEEGCA 89

[Close]

BLAST of MELO3C032813.jh1 vs. TAIR 10
Match: AT4G15802.1 (heat shock factor binding protein )

HSP 1 Score: 50.8 bits (120), Expect = 6.9e-07
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 50 DEMGSRINELEQSINDLKVEMGVEGSPSPLLPSKSVADEVKKDEGSA 97
          D+MG RINELEQSINDL+ EMGVEG+P P   SKS  DE K    S+
Sbjct: 43 DDMGGRINELEQSINDLRAEMGVEGTPPP--ASKS-GDEPKTPASSS 86

The following BLAST results are available for this feature:

BLAST of MELO3C032813.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451602.1	1.98e-20	95.74	PREDICTED: heat shock factor-binding protein 1 [Cucumis melo]	[more]
XP_004136040.1	1.14e-19	93.62	heat shock factor-binding protein isoform X2 [Cucumis sativus]	[more]
KAG7014376.1	1.33e-19	89.80	hypothetical protein SDJN02_24553 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_004136039.1	1.46e-19	69.44	heat shock factor-binding protein isoform X1 [Cucumis sativus]	[more]
XP_022991819.1	3.43e-19	91.49	heat shock factor-binding protein 1-like isoform X2 [Cucurbita maxima]	[more]

BLAST of MELO3C032813.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW48	9.8e-06	63.83	Heat shock factor-binding protein OS=Arabidopsis thaliana OX=3702 GN=HSBP PE=1 S...	[more]

BLAST of MELO3C032813.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BSN9	9.57e-21	95.74	heat shock factor-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103492833 PE=3...	[more]
A0A6J1JVW1	1.66e-19	91.49	heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1GMG8	1.66e-19	91.49	heat shock factor-binding protein 1-like isoform X2 OS=Cucurbita moschata OX=366...	[more]
A0A5C7I294	3.36e-19	67.74	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010451 PE=3 SV=1	[more]
A0A6A1URS6	1.05e-17	80.85	Heat shock factor-binding protein 1 OS=Morella rubra OX=262757 GN=CJ030_MR8G0020...	[more]

BLAST of MELO3C032813.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15802.1	6.9e-07	63.83	heat shock factor binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 49..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..96
None	No IPR available	PANTHER	PTHR19424:SF8	HEAT SHOCK FACTOR-BINDING PROTEIN 1-LIKE	coord: 49..91
IPR009643	Heat shock factor binding 1	PANTHER	PTHR19424	HEAT SHOCK FACTOR BINDING PROTEIN 1	coord: 49..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032813.jh1.t1	MELO3C032813.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003714	transcription corepressor activity