MELO3C032795.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C032795.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr07: 20811458 .. 20812480 (+)
RNA-Seq ExpressionMELO3C032795.jh1
SyntenyMELO3C032795.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGCACGAAGGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGTTGGTGTCGATGGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACCGAAGTGAACATTTCAGGCCATTGCCGAAATGCAGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGGTATGGAAAATAATTTAAACGTCACACAACGTTCACAATGTACATTTAGTTAACAATTTTTCAATTAGTACTCATACATGATATGTTTTTTGCCCGCAGTCGCATCCTGCAGCAAAGGGACTCCTGAACAAACCATTCCCGTATTACGACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCTGGTGGCGGATATAACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGAGAATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTGTCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATCTGACGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCTGCATGCAACCTTGCAAATGACAACCATGTGTGCACGGAATTTTTCCACATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGAGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTTATGCCTAAGGATGAGAGAGAGAGGGATTTTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

mRNA sequence

TATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGCACGAAGGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGTTGGTGTCGATGGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGCCATTGCCGAAATGCAGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCAAAGGGACTCCTGAACAAACCATTCCCGTATTACGACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCTGGTGGCGGATATAACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGAGAATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTGTCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATCTGACGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCTGCATGCAACCTTGCAAATGACAACCATGTGTGCACGGAATTTTTCCACATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGAGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTTATGCCTAAGGATGAGAGAGAGAGGGATTTTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

Coding sequence (CDS)

ATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGCACGAAGGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGTTGGTGTCGATGGGGGGATGGAAATCAGATAATGGTACGTTCCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGCCATTGCCGAAATGCAGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCAAAGGGACTCCTGAACAAACCATTCCCGTATTACGACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCTGGTGGCGGATATAACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGAGAATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTGTCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATCTGACGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCTGCATGCAACCTTGCAAATGACAACCATGTGTGCACGGAATTTTTCCACATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGAGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTTATGCCTAAGGATGAGAGAGAGAGGGATTTTGTAGAGTCCTCCTACGAGACATAG

Protein sequence

MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQAIAEMQGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQRIDLSQDDVRASRPSVASEGRTGSSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRQIAEWPACNLANDNHVCTEFFHILREMPELTSLDRELLQRHLLSRMDDLRGFVLMPKDERERDFVESSYET
Homology
[Close]
BLAST of MELO3C032795.jh1 vs. NCBI nr
Match: KAA0062976.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 572 bits (1475), Expect = 5.12e-206
Identity = 279/285 (97.89%), Postives = 279/285 (97.89%), Query Frame = 0 

Query: 1   MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  AIAEMQGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRD 120
                 GPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRD
Sbjct: 61  ------GPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRD 120

Query: 121 RATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQRIDLSQDDVRASRPSVASEG 180
           RATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQRIDLSQDDVRASRPSVASEG
Sbjct: 121 RATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQRIDLSQDDVRASRPSVASEG 180

Query: 181 RTGSSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRQIAEWPACNLANDNHVCTEFFHILRE 240
           RTGSSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRQIAEWPACNLANDNHVCTEFFHILRE
Sbjct: 181 RTGSSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRQIAEWPACNLANDNHVCTEFFHILRE 240

Query: 241 MPELTSLDRELLQRHLLSRMDDLRGFVLMPKDERERDFVESSYET 285
           MPELTSLDRELLQRHLLSRMDDLRGFVLMPKDERERDFVESSYET
Sbjct: 241 MPELTSLDRELLQRHLLSRMDDLRGFVLMPKDERERDFVESSYET 279

[Close]
BLAST of MELO3C032795.jh1 vs. NCBI nr
Match: TYK16368.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 542 bits (1397), Expect = 4.29e-194
Identity = 264/274 (96.35%), Postives = 266/274 (97.08%), Query Frame = 0 

Query: 1   MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  AIAEMQGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRD 120
                 GP CSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRD
Sbjct: 61  ------GPTCSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRD 120

Query: 121 RATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQRIDLSQDDVRASRPSVASEG 180
           RATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQRIDLSQDDVRASRPSVASEG
Sbjct: 121 RATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQRIDLSQDDVRASRPSVASEG 180

Query: 181 RTGSSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRQIAEWPACNLANDNHVCTEFFHILRE 240
           RTGSSGSKRKRG+QRDFDVEAIHLTLDQTNEQLRQIAEWPACNLANDNHV TEFFHILRE
Sbjct: 181 RTGSSGSKRKRGNQRDFDVEAIHLTLDQTNEQLRQIAEWPACNLANDNHVRTEFFHILRE 240

Query: 241 MPELTSLDRELLQRHLLSRMDDLRGFVLMPKDER 274
           MP+LTSLDRELLQRHLLSRMDDLRGFVLMPKDER
Sbjct: 241 MPKLTSLDRELLQRHLLSRMDDLRGFVLMPKDER 268

[Close]
BLAST of MELO3C032795.jh1 vs. NCBI nr
Match: TYK21395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 522 bits (1344), Expect = 1.29e-185
Identity = 258/294 (87.76%), Postives = 267/294 (90.82%), Query Frame = 0 

Query: 1   MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHV T+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  -------------------AIAEMQGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 120
                              AIAEM+GPACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQR 180
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGY+RFDMGDGNEDFPPVYSQ 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IDLSQDDVRASRPSVASEGRTGSSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRQIAEWPA 240
           +D+SQDDVRASRPS ASEGRTGSSGSKRKRGSQRDF++EAIHL LDQTNEQLRQIAEWPA
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240

Query: 241 CNLANDNHVCTEFFHILREMPELTSLDRELLQRHLLSRMDDLRGFVLMPKDERE 275
            NLANDNHV TEFF ILREMPELTSLDR LLQRHLLSRMDDLRGFVLMP+DERE
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 294

[Close]
BLAST of MELO3C032795.jh1 vs. NCBI nr
Match: KAA0033744.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046274.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049705.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0057135.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 521 bits (1341), Expect = 3.68e-185
Identity = 257/294 (87.41%), Postives = 267/294 (90.82%), Query Frame = 0 

Query: 1   MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHV T+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  -------------------AIAEMQGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 120
                              AIAEM+GPACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQR 180
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGY+RFDMGDGNEDFPPVYSQ 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IDLSQDDVRASRPSVASEGRTGSSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRQIAEWPA 240
           +D+SQDDVRASRPS ASEGRTGSSGSKRKRGSQRDF++EAIHL LDQTNEQLR+IAEWPA
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPA 240

Query: 241 CNLANDNHVCTEFFHILREMPELTSLDRELLQRHLLSRMDDLRGFVLMPKDERE 275
            NLANDNHV TEFF ILREMPELTSLDR LLQRHLLSRMDDLRGFVLMP+DERE
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 294

[Close]
BLAST of MELO3C032795.jh1 vs. NCBI nr
Match: KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 522 bits (1344), Expect = 5.14e-185
Identity = 258/294 (87.76%), Postives = 267/294 (90.82%), Query Frame = 0 

Query: 1   MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHV T+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  -------------------AIAEMQGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 120
                              AIAEM+GPACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQR 180
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGY+RFDMGDGNEDFPPVYSQ 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IDLSQDDVRASRPSVASEGRTGSSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRQIAEWPA 240
           +D+SQDDVRASRPS ASEGRTGSSGSKRKRGSQRDF++EAIHL LDQTNEQLRQIAEWPA
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240

Query: 241 CNLANDNHVCTEFFHILREMPELTSLDRELLQRHLLSRMDDLRGFVLMPKDERE 275
            NLANDNHV TEFF ILREMPELTSLDR LLQRHLLSRMDDLRGFVLMP+DERE
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 294

[Close]
BLAST of MELO3C032795.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V951 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00730 PE=4 SV=1)

HSP 1 Score: 572 bits (1475), Expect = 2.48e-206
Identity = 279/285 (97.89%), Postives = 279/285 (97.89%), Query Frame = 0 

Query: 1   MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  AIAEMQGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRD 120
                 GPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRD
Sbjct: 61  ------GPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRD 120

Query: 121 RATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQRIDLSQDDVRASRPSVASEG 180
           RATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQRIDLSQDDVRASRPSVASEG
Sbjct: 121 RATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQRIDLSQDDVRASRPSVASEG 180

Query: 181 RTGSSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRQIAEWPACNLANDNHVCTEFFHILRE 240
           RTGSSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRQIAEWPACNLANDNHVCTEFFHILRE
Sbjct: 181 RTGSSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRQIAEWPACNLANDNHVCTEFFHILRE 240

Query: 241 MPELTSLDRELLQRHLLSRMDDLRGFVLMPKDERERDFVESSYET 285
           MPELTSLDRELLQRHLLSRMDDLRGFVLMPKDERERDFVESSYET
Sbjct: 241 MPELTSLDRELLQRHLLSRMDDLRGFVLMPKDERERDFVESSYET 279

[Close]
BLAST of MELO3C032795.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CYL4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001570 PE=4 SV=1)

HSP 1 Score: 542 bits (1397), Expect = 2.08e-194
Identity = 264/274 (96.35%), Postives = 266/274 (97.08%), Query Frame = 0 

Query: 1   MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  AIAEMQGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRD 120
                 GP CSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRD
Sbjct: 61  ------GPTCSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRD 120

Query: 121 RATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQRIDLSQDDVRASRPSVASEG 180
           RATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQRIDLSQDDVRASRPSVASEG
Sbjct: 121 RATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQRIDLSQDDVRASRPSVASEG 180

Query: 181 RTGSSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRQIAEWPACNLANDNHVCTEFFHILRE 240
           RTGSSGSKRKRG+QRDFDVEAIHLTLDQTNEQLRQIAEWPACNLANDNHV TEFFHILRE
Sbjct: 181 RTGSSGSKRKRGNQRDFDVEAIHLTLDQTNEQLRQIAEWPACNLANDNHVRTEFFHILRE 240

Query: 241 MPELTSLDRELLQRHLLSRMDDLRGFVLMPKDER 274
           MP+LTSLDRELLQRHLLSRMDDLRGFVLMPKDER
Sbjct: 241 MPKLTSLDRELLQRHLLSRMDDLRGFVLMPKDER 268

[Close]
BLAST of MELO3C032795.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 522 bits (1344), Expect = 6.23e-186
Identity = 258/294 (87.76%), Postives = 267/294 (90.82%), Query Frame = 0 

Query: 1   MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHV T+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  -------------------AIAEMQGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 120
                              AIAEM+GPACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQR 180
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGY+RFDMGDGNEDFPPVYSQ 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IDLSQDDVRASRPSVASEGRTGSSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRQIAEWPA 240
           +D+SQDDVRASRPS ASEGRTGSSGSKRKRGSQRDF++EAIHL LDQTNEQLRQIAEWPA
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240

Query: 241 CNLANDNHVCTEFFHILREMPELTSLDRELLQRHLLSRMDDLRGFVLMPKDERE 275
            NLANDNHV TEFF ILREMPELTSLDR LLQRHLLSRMDDLRGFVLMP+DERE
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 294

[Close]
BLAST of MELO3C032795.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 521 bits (1341), Expect = 1.78e-185
Identity = 257/294 (87.41%), Postives = 267/294 (90.82%), Query Frame = 0 

Query: 1   MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHV T+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  -------------------AIAEMQGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 120
                              AIAEM+GPACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQR 180
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGY+RFDMGDGNEDFPPVYSQ 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IDLSQDDVRASRPSVASEGRTGSSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRQIAEWPA 240
           +D+SQDDVRASRPS ASEGRTGSSGSKRKRGSQRDF++EAIHL LDQTNEQLR+IAEWPA
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPA 240

Query: 241 CNLANDNHVCTEFFHILREMPELTSLDRELLQRHLLSRMDDLRGFVLMPKDERE 275
            NLANDNHV TEFF ILREMPELTSLDR LLQRHLLSRMDDLRGFVLMP+DERE
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 294

[Close]
BLAST of MELO3C032795.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SRU1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00100 PE=4 SV=1)

HSP 1 Score: 522 bits (1344), Expect = 2.49e-185
Identity = 258/294 (87.76%), Postives = 267/294 (90.82%), Query Frame = 0 

Query: 1   MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHV T+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  -------------------AIAEMQGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKG 120
                              AIAEM+GPACSGFGWNDEEKCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYNRFDMGDGNEDFPPVYSQR 180
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGY+RFDMGDGNEDFPPVYSQ 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IDLSQDDVRASRPSVASEGRTGSSGSKRKRGSQRDFDVEAIHLTLDQTNEQLRQIAEWPA 240
           +D+SQDDVRASRPS ASEGRTGSSGSKRKRGSQRDF++EAIHL LDQTNEQLRQIAEWPA
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240

Query: 241 CNLANDNHVCTEFFHILREMPELTSLDRELLQRHLLSRMDDLRGFVLMPKDERE 275
            NLANDNHV TEFF ILREMPELTSLDR LLQRHLLSRMDDLRGFVLMP+DERE
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 294

[Close]
BLAST of MELO3C032795.jh1 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 2.9e-08
Identity = 42/137 (30.66%), Postives = 63/137 (45.99%), Query Frame = 0 

Query: 15  EEEGTLVECLMELVSMGGWKSDNGT---------FRP----------GYLAQLVRMMAEK 74
           EE   LV+ L+E ++   W+  NGT         F P           Y   L RM   K
Sbjct: 20  EETKLLVQLLVEGIN-NNWRDSNGTISKLTVETKFMPEINKEFCRSKNYNHYLSRMKYLK 79

Query: 75  LPGCQAIAEMQGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTY 133
           +   Q+  ++Q    SGFGW+   K   A  E++ +++++HP  K L    F ++DEL  
Sbjct: 80  IQ-YQSCLDLQ-RFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDELQI 139

[Close]
BLAST of MELO3C032795.jh1 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-06
Identity = 16/56 (28.57%), Postives = 35/56 (62.50%), Query Frame = 0 

Query: 71  SGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRF 127
           +GF W+     +IA+ ++++ ++++HP A+    K  P Y  L ++FG++ + GR+
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDGRY 454

[Close]
BLAST of MELO3C032795.jh1 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 1.9e-04
Identity = 13/47 (27.66%), Postives = 30/47 (63.83%), Query Frame = 0 

Query: 72  GFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG 119
           GF W++E + + A+  ++ +++++H  A+  + +P PYY +L  + G
Sbjct: 259 GFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCG 305

[Close]
BLAST of MELO3C032795.jh1 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 44.3 bits (103), Expect = 1.9e-04
Identity = 13/47 (27.66%), Postives = 30/47 (63.83%), Query Frame = 0 

Query: 72  GFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFG 119
           GF W++E + + A+  ++ +++++H  A+  + +P PYY +L  + G
Sbjct: 259 GFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCG 305

[Close]
BLAST of MELO3C032795.jh1 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 9.6e-04
Identity = 16/62 (25.81%), Postives = 34/62 (54.84%), Query Frame = 0 

Query: 72  GFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 131
           GF W+   + +I +  L+  ++++HP A+    KP   + +L  ++G   A GR++ +  
Sbjct: 88  GFVWDQTHQTVIGDDSLWSLYLKAHPEARVYKTKPVLNFSDLCLIYGYTVADGRYSMSSH 147

Query: 132 DV 134
           D+
Sbjct: 148 DL 149

The following BLAST results are available for this feature:
BLAST of MELO3C032795.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062976.15.12e-20697.89retrotransposon protein [Cucumis melo var. makuwa][more]
TYK16368.14.29e-19496.35retrotransposon protein [Cucumis melo var. makuwa][more]
TYK21395.11.29e-18587.76retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon p... [more]
KAA0033744.13.68e-18587.41retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon... [more]
KAA0032766.15.14e-18587.76retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C032795.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032795.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V9512.48e-20697.89Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CYL42.08e-19496.35Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DCZ16.23e-18687.76Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TRV11.78e-18587.41Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SRU12.49e-18587.76Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C032795.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27260.12.9e-0830.66unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G24960.22.1e-0628.57unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G02210.11.9e-0427.66unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.21.9e-0427.66unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G24960.19.6e-0425.81unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..194
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 3..275
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 3..275

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032795.jh1.t1MELO3C032795.jh1.t1mRNA