MELO3C032763 (gene) Melon (DHL92) v4

Overview
NameMELO3C032763
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionClassical arabinogalactan protein 1-like
Locationchr07: 17436686 .. 17437045 (-)
RNA-Seq ExpressionMELO3C032763
SyntenyMELO3C032763
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTAGAAGTCTTGTTGCCATGATTTTAGTGTCTTTCTTGATCGCCTCTGCTTTCGCTCAATCTCCAACCCAATCACCGTCCAAGGCTCCATCGGTCTCTCCGTCTGTTAAGTCCCCCAAATCCTCTCCGGCGTTTGCGCCTACTCCTTCCTCCTTGAAGTCTCCACCATCTCCTCCTTCTACTTCTCCTTCTACTTCGCCGTCCAGTTCTCCGTCTCCGGCCACTTCTCCTTCCTCGATCTCCTCACCGCCCGCTGACGCTCCCGCTCCGTCAGGTAACGGCGCTGCTTCGATCACTTTTTCGGTGTTGGGGTCTGCTGCGGTTGCGCTATACGCCGTCGTATTGATGATCTGA

mRNA sequence

ATGGCGATTAGAAGTCTTGTTGCCATGATTTTAGTGTCTTTCTTGATCGCCTCTGCTTTCGCTCAATCTCCAACCCAATCACCGTCCAAGGCTCCATCGGTCTCTCCGTCTGTTAAGTCCCCCAAATCCTCTCCGGCGTTTGCGCCTACTCCTTCCTCCTTGAAGTCTCCACCATCTCCTCCTTCTACTTCTCCTTCTACTTCGCCGTCCAGTTCTCCGTCTCCGGCCACTTCTCCTTCCTCGATCTCCTCACCGCCCGCTGACGCTCCCGCTCCGTCAGGTAACGGCGCTGCTTCGATCACTTTTTCGGTGTTGGGGTCTGCTGCGGTTGCGCTATACGCCGTCGTATTGATGATCTGA

Coding sequence (CDS)

ATGGCGATTAGAAGTCTTGTTGCCATGATTTTAGTGTCTTTCTTGATCGCCTCTGCTTTCGCTCAATCTCCAACCCAATCACCGTCCAAGGCTCCATCGGTCTCTCCGTCTGTTAAGTCCCCCAAATCCTCTCCGGCGTTTGCGCCTACTCCTTCCTCCTTGAAGTCTCCACCATCTCCTCCTTCTACTTCTCCTTCTACTTCGCCGTCCAGTTCTCCGTCTCCGGCCACTTCTCCTTCCTCGATCTCCTCACCGCCCGCTGACGCTCCCGCTCCGTCAGGTAACGGCGCTGCTTCGATCACTTTTTCGGTGTTGGGGTCTGCTGCGGTTGCGCTATACGCCGTCGTATTGATGATCTGA

Protein sequence

MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI
Homology
BLAST of MELO3C032763 vs. NCBI nr
Match: KAA0061155.1 (classical arabinogalactan protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 5.9e-42
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0

Query: 1   MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSP 60
           MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPA APTPSSLKSPPSP
Sbjct: 1   MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPALAPTPSSLKSPPSP 60

Query: 61  PSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI 120
           PSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI
Sbjct: 61  PSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI 119

BLAST of MELO3C032763 vs. NCBI nr
Match: XP_038877310.1 (classical arabinogalactan protein 1 [Benincasa hispida])

HSP 1 Score: 140.6 bits (353), Expect = 8.9e-30
Identity = 99/125 (79.20%), Postives = 105/125 (84.00%), Query Frame = 0

Query: 1   MAIRSLVAMILVSFLIASAFAQ------SPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSL 60
           MAIRS VAMILV+ LI SA AQ      SP++SPSKAPS SPSVKSPKSSPA APTPSSL
Sbjct: 1   MAIRSFVAMILVALLIGSAIAQSPGASPSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSL 60

Query: 61  KSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYA 120
           KSPPSPPSTSP+TSPS   SPATSPS ISSPPADAPAPSGNGAASI+FSV GS AV LY 
Sbjct: 61  KSPPSPPSTSPATSPSPVTSPATSPSLISSPPADAPAPSGNGAASISFSVFGSVAVVLYT 120

BLAST of MELO3C032763 vs. NCBI nr
Match: KGN53727.1 (hypothetical protein Csa_015026 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 9.8e-29
Identity = 98/123 (79.67%), Postives = 104/123 (84.55%), Query Frame = 0

Query: 1   MAIRSLVAMILVSFLIASAFAQSPTQSPS----KAPSVSPSVKSPKSSPAFAPTPSSLKS 60
           MAI SLVA+I VSF IASAFAQSP  SPS    K+PS +PS  SPKSSPA APTPSSLKS
Sbjct: 1   MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSHNSPKSSPAVAPTPSSLKS 60

Query: 61  PPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVV 120
           PPSPPS+SPST    SPSPA+SP+SISSPPADAPAPSGNGAASITFSV GS AVALYAVV
Sbjct: 61  PPSPPSSSPST----SPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAVALYAVV 119

BLAST of MELO3C032763 vs. NCBI nr
Match: XP_023542663.1 (classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.9 bits (302), Expect = 7.3e-24
Identity = 87/127 (68.50%), Postives = 99/127 (77.95%), Query Frame = 0

Query: 1   MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPAFAPTPS 60
           MAIR  V M++V+ LI SA AQ        SPT+SPSKAPS+SPSV+SPKSSPA APTP+
Sbjct: 1   MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVAL 120
           SL+SPPSPP+ SPS SPS SP    SPSSISSPPADAPAPSGN AASI+ S+ GS A  L
Sbjct: 61  SLQSPPSPPAASPSLSPSPSP----SPSSISSPPADAPAPSGNAAASISLSMFGSVAAVL 120

BLAST of MELO3C032763 vs. NCBI nr
Match: XP_022942993.1 (classical arabinogalactan protein 1-like [Cucurbita moschata])

HSP 1 Score: 120.9 bits (302), Expect = 7.3e-24
Identity = 87/127 (68.50%), Postives = 97/127 (76.38%), Query Frame = 0

Query: 1   MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPAFAPTPS 60
           MAIR  V M+ V+ LI SA AQ        SPT+SPSKAPS+SPSV+SPKSSPA APTP+
Sbjct: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVAL 120
           SLKSPPSPP+ SPS SPS       SPSSISSPPADAPAPSGN AASI+FS+ GS A  L
Sbjct: 61  SLKSPPSPPAASPSLSPS------PSPSSISSPPADAPAPSGNAAASISFSMFGSVATVL 120

BLAST of MELO3C032763 vs. ExPASy Swiss-Prot
Match: Q8LCN5 (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 7.1e-06
Identity = 59/132 (44.70%), Postives = 73/132 (55.30%), Query Frame = 0

Query: 4   RSLVAMILVSFLIASAFAQSPTQSPSK----------------APSVSPSVKSPKSSPAF 63
           +SLV ++L + LI+SA AQSP  +PS                 AP+ +P V SP  SPA 
Sbjct: 5   KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEV-SPSPSPAA 64

Query: 64  APTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGS 120
           A TP S  SPPSPP     T    + SPA SPS+IS  P +AP P+  GA S  F+  GS
Sbjct: 65  ALTPESSASPPSPPLADSPT----ADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGS 124

BLAST of MELO3C032763 vs. ExPASy TrEMBL
Match: A0A5A7V5Q9 (Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00230 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.9e-42
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0

Query: 1   MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSP 60
           MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPA APTPSSLKSPPSP
Sbjct: 1   MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPALAPTPSSLKSPPSP 60

Query: 61  PSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI 120
           PSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI
Sbjct: 61  PSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI 119

BLAST of MELO3C032763 vs. ExPASy TrEMBL
Match: A0A0A0KZB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.7e-29
Identity = 98/123 (79.67%), Postives = 104/123 (84.55%), Query Frame = 0

Query: 1   MAIRSLVAMILVSFLIASAFAQSPTQSPS----KAPSVSPSVKSPKSSPAFAPTPSSLKS 60
           MAI SLVA+I VSF IASAFAQSP  SPS    K+PS +PS  SPKSSPA APTPSSLKS
Sbjct: 1   MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSHNSPKSSPAVAPTPSSLKS 60

Query: 61  PPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVV 120
           PPSPPS+SPST    SPSPA+SP+SISSPPADAPAPSGNGAASITFSV GS AVALYAVV
Sbjct: 61  PPSPPSSSPST----SPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAVALYAVV 119

BLAST of MELO3C032763 vs. ExPASy TrEMBL
Match: A0A6J1FW49 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447861 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.5e-24
Identity = 87/127 (68.50%), Postives = 97/127 (76.38%), Query Frame = 0

Query: 1   MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPAFAPTPS 60
           MAIR  V M+ V+ LI SA AQ        SPT+SPSKAPS+SPSV+SPKSSPA APTP+
Sbjct: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVAL 120
           SLKSPPSPP+ SPS SPS       SPSSISSPPADAPAPSGN AASI+FS+ GS A  L
Sbjct: 61  SLKSPPSPPAASPSLSPS------PSPSSISSPPADAPAPSGNAAASISFSMFGSVATVL 120

BLAST of MELO3C032763 vs. ExPASy TrEMBL
Match: A0A6J1JSK4 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488535 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 9.6e-22
Identity = 83/127 (65.35%), Postives = 94/127 (74.02%), Query Frame = 0

Query: 1   MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPAFAPTPS 60
           MA R  V M+ V+ LI SA AQ        SPT+SPSKAPS+SPSV+SPKSSPA APTP+
Sbjct: 1   MAHRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVQSPKSSPAAAPTPT 60

Query: 61  SLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVAL 120
           SLKSPPSPP+ SPS SPS       SPSSISSPPADAPAPSGN AASI+ S+ GS A  L
Sbjct: 61  SLKSPPSPPAASPSLSPS------PSPSSISSPPADAPAPSGNSAASISLSMFGSVAAVL 120

BLAST of MELO3C032763 vs. ExPASy TrEMBL
Match: A0A6J1E9Q3 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430664 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.8e-21
Identity = 87/127 (68.50%), Postives = 93/127 (73.23%), Query Frame = 0

Query: 1   MAIRSLVAMILVSFLIASAFAQSPT--------QSPSKAPSVSPSVKSPKSSPAFAPTPS 60
           MAIRS V MILV+ LI SA AQSP         +SPSKAPS SPSVKSPKSSPA APTP+
Sbjct: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPA-APTPA 60

Query: 61  SLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVAL 120
           S              SPS+SPSPA SPSSISSPPADAPAPSG+GAASI+FSV GS AV L
Sbjct: 61  S--------------SPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVL 112

BLAST of MELO3C032763 vs. TAIR 10
Match: AT5G64310.1 (arabinogalactan protein 1 )

HSP 1 Score: 51.6 bits (122), Expect = 5.0e-07
Identity = 59/132 (44.70%), Postives = 73/132 (55.30%), Query Frame = 0

Query: 4   RSLVAMILVSFLIASAFAQSPTQSPSK----------------APSVSPSVKSPKSSPAF 63
           +SLV ++L + LI+SA AQSP  +PS                 AP+ +P V SP  SPA 
Sbjct: 5   KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEV-SPSPSPAA 64

Query: 64  APTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGS 120
           A TP S  SPPSPP     T    + SPA SPS+IS  P +AP P+  GA S  F+  GS
Sbjct: 65  ALTPESSASPPSPPLADSPT----ADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGS 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0061155.15.9e-4299.16classical arabinogalactan protein 1-like [Cucumis melo var. makuwa][more]
XP_038877310.18.9e-3079.20classical arabinogalactan protein 1 [Benincasa hispida][more]
KGN53727.19.8e-2979.67hypothetical protein Csa_015026 [Cucumis sativus][more]
XP_023542663.17.3e-2468.50classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_022942993.17.3e-2468.50classical arabinogalactan protein 1-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q8LCN57.1e-0644.70Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2... [more]
Match NameE-valueIdentityDescription
A0A5A7V5Q92.9e-4299.16Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A0A0KZB84.7e-2979.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1[more]
A0A6J1FW493.5e-2468.50classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1JSK49.6e-2265.35classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1E9Q32.8e-2168.50classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
Match NameE-valueIdentityDescription
AT5G64310.15.0e-0744.70arabinogalactan protein 1 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..68
NoneNo IPR availablePANTHERPTHR36321:SF2CLASSICAL ARABINOGALACTAN PROTEIN 1coord: 1..119
IPR044959Classical arabinogalactan proteinPANTHERPTHR36321CLASSICAL ARABINOGALACTAN PROTEIN 9coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032763.1MELO3C032763.1mRNA