Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTAGAAGTCTTGTTGCCATGATTTTAGTGTCTTTCTTGATCGCCTCTGCTTTCGCTCAATCTCCAACCCAATCACCGTCCAAGGCTCCATCGGTCTCTCCGTCTGTTAAGTCCCCCAAATCCTCTCCGGCGTTTGCGCCTACTCCTTCCTCCTTGAAGTCTCCACCATCTCCTCCTTCTACTTCTCCTTCTACTTCGCCGTCCAGTTCTCCGTCTCCGGCCACTTCTCCTTCCTCGATCTCCTCACCGCCCGCTGACGCTCCCGCTCCGTCAGGTAACGGCGCTGCTTCGATCACTTTTTCGGTGTTGGGGTCTGCTGCGGTTGCGCTATACGCCGTCGTATTGATGATCTGA
mRNA sequence
ATGGCGATTAGAAGTCTTGTTGCCATGATTTTAGTGTCTTTCTTGATCGCCTCTGCTTTCGCTCAATCTCCAACCCAATCACCGTCCAAGGCTCCATCGGTCTCTCCGTCTGTTAAGTCCCCCAAATCCTCTCCGGCGTTTGCGCCTACTCCTTCCTCCTTGAAGTCTCCACCATCTCCTCCTTCTACTTCTCCTTCTACTTCGCCGTCCAGTTCTCCGTCTCCGGCCACTTCTCCTTCCTCGATCTCCTCACCGCCCGCTGACGCTCCCGCTCCGTCAGGTAACGGCGCTGCTTCGATCACTTTTTCGGTGTTGGGGTCTGCTGCGGTTGCGCTATACGCCGTCGTATTGATGATCTGA
Coding sequence (CDS)
ATGGCGATTAGAAGTCTTGTTGCCATGATTTTAGTGTCTTTCTTGATCGCCTCTGCTTTCGCTCAATCTCCAACCCAATCACCGTCCAAGGCTCCATCGGTCTCTCCGTCTGTTAAGTCCCCCAAATCCTCTCCGGCGTTTGCGCCTACTCCTTCCTCCTTGAAGTCTCCACCATCTCCTCCTTCTACTTCTCCTTCTACTTCGCCGTCCAGTTCTCCGTCTCCGGCCACTTCTCCTTCCTCGATCTCCTCACCGCCCGCTGACGCTCCCGCTCCGTCAGGTAACGGCGCTGCTTCGATCACTTTTTCGGTGTTGGGGTCTGCTGCGGTTGCGCTATACGCCGTCGTATTGATGATCTGA
Protein sequence
MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI
Homology
BLAST of MELO3C032763 vs. NCBI nr
Match:
KAA0061155.1 (classical arabinogalactan protein 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 181.0 bits (458), Expect = 5.9e-42
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0
Query: 1 MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSP 60
MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPA APTPSSLKSPPSP
Sbjct: 1 MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPALAPTPSSLKSPPSP 60
Query: 61 PSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI 120
PSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI
Sbjct: 61 PSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI 119
BLAST of MELO3C032763 vs. NCBI nr
Match:
XP_038877310.1 (classical arabinogalactan protein 1 [Benincasa hispida])
HSP 1 Score: 140.6 bits (353), Expect = 8.9e-30
Identity = 99/125 (79.20%), Postives = 105/125 (84.00%), Query Frame = 0
Query: 1 MAIRSLVAMILVSFLIASAFAQ------SPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSL 60
MAIRS VAMILV+ LI SA AQ SP++SPSKAPS SPSVKSPKSSPA APTPSSL
Sbjct: 1 MAIRSFVAMILVALLIGSAIAQSPGASPSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSL 60
Query: 61 KSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYA 120
KSPPSPPSTSP+TSPS SPATSPS ISSPPADAPAPSGNGAASI+FSV GS AV LY
Sbjct: 61 KSPPSPPSTSPATSPSPVTSPATSPSLISSPPADAPAPSGNGAASISFSVFGSVAVVLYT 120
BLAST of MELO3C032763 vs. NCBI nr
Match:
KGN53727.1 (hypothetical protein Csa_015026 [Cucumis sativus])
HSP 1 Score: 137.1 bits (344), Expect = 9.8e-29
Identity = 98/123 (79.67%), Postives = 104/123 (84.55%), Query Frame = 0
Query: 1 MAIRSLVAMILVSFLIASAFAQSPTQSPS----KAPSVSPSVKSPKSSPAFAPTPSSLKS 60
MAI SLVA+I VSF IASAFAQSP SPS K+PS +PS SPKSSPA APTPSSLKS
Sbjct: 1 MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSHNSPKSSPAVAPTPSSLKS 60
Query: 61 PPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVV 120
PPSPPS+SPST SPSPA+SP+SISSPPADAPAPSGNGAASITFSV GS AVALYAVV
Sbjct: 61 PPSPPSSSPST----SPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAVALYAVV 119
BLAST of MELO3C032763 vs. NCBI nr
Match:
XP_023542663.1 (classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 120.9 bits (302), Expect = 7.3e-24
Identity = 87/127 (68.50%), Postives = 99/127 (77.95%), Query Frame = 0
Query: 1 MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPAFAPTPS 60
MAIR V M++V+ LI SA AQ SPT+SPSKAPS+SPSV+SPKSSPA APTP+
Sbjct: 1 MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60
Query: 61 SLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVAL 120
SL+SPPSPP+ SPS SPS SP SPSSISSPPADAPAPSGN AASI+ S+ GS A L
Sbjct: 61 SLQSPPSPPAASPSLSPSPSP----SPSSISSPPADAPAPSGNAAASISLSMFGSVAAVL 120
BLAST of MELO3C032763 vs. NCBI nr
Match:
XP_022942993.1 (classical arabinogalactan protein 1-like [Cucurbita moschata])
HSP 1 Score: 120.9 bits (302), Expect = 7.3e-24
Identity = 87/127 (68.50%), Postives = 97/127 (76.38%), Query Frame = 0
Query: 1 MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPAFAPTPS 60
MAIR V M+ V+ LI SA AQ SPT+SPSKAPS+SPSV+SPKSSPA APTP+
Sbjct: 1 MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60
Query: 61 SLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVAL 120
SLKSPPSPP+ SPS SPS SPSSISSPPADAPAPSGN AASI+FS+ GS A L
Sbjct: 61 SLKSPPSPPAASPSLSPS------PSPSSISSPPADAPAPSGNAAASISFSMFGSVATVL 120
BLAST of MELO3C032763 vs. ExPASy Swiss-Prot
Match:
Q8LCN5 (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2 SV=2)
HSP 1 Score: 51.6 bits (122), Expect = 7.1e-06
Identity = 59/132 (44.70%), Postives = 73/132 (55.30%), Query Frame = 0
Query: 4 RSLVAMILVSFLIASAFAQSPTQSPSK----------------APSVSPSVKSPKSSPAF 63
+SLV ++L + LI+SA AQSP +PS AP+ +P V SP SPA
Sbjct: 5 KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEV-SPSPSPAA 64
Query: 64 APTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGS 120
A TP S SPPSPP T + SPA SPS+IS P +AP P+ GA S F+ GS
Sbjct: 65 ALTPESSASPPSPPLADSPT----ADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGS 124
BLAST of MELO3C032763 vs. ExPASy TrEMBL
Match:
A0A5A7V5Q9 (Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00230 PE=4 SV=1)
HSP 1 Score: 181.0 bits (458), Expect = 2.9e-42
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0
Query: 1 MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPAFAPTPSSLKSPPSP 60
MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPA APTPSSLKSPPSP
Sbjct: 1 MAIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPALAPTPSSLKSPPSP 60
Query: 61 PSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI 120
PSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI
Sbjct: 61 PSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVVLMI 119
BLAST of MELO3C032763 vs. ExPASy TrEMBL
Match:
A0A0A0KZB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1)
HSP 1 Score: 137.1 bits (344), Expect = 4.7e-29
Identity = 98/123 (79.67%), Postives = 104/123 (84.55%), Query Frame = 0
Query: 1 MAIRSLVAMILVSFLIASAFAQSPTQSPS----KAPSVSPSVKSPKSSPAFAPTPSSLKS 60
MAI SLVA+I VSF IASAFAQSP SPS K+PS +PS SPKSSPA APTPSSLKS
Sbjct: 1 MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSHNSPKSSPAVAPTPSSLKS 60
Query: 61 PPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALYAVV 120
PPSPPS+SPST SPSPA+SP+SISSPPADAPAPSGNGAASITFSV GS AVALYAVV
Sbjct: 61 PPSPPSSSPST----SPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAVALYAVV 119
BLAST of MELO3C032763 vs. ExPASy TrEMBL
Match:
A0A6J1FW49 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447861 PE=4 SV=1)
HSP 1 Score: 120.9 bits (302), Expect = 3.5e-24
Identity = 87/127 (68.50%), Postives = 97/127 (76.38%), Query Frame = 0
Query: 1 MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPAFAPTPS 60
MAIR V M+ V+ LI SA AQ SPT+SPSKAPS+SPSV+SPKSSPA APTP+
Sbjct: 1 MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60
Query: 61 SLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVAL 120
SLKSPPSPP+ SPS SPS SPSSISSPPADAPAPSGN AASI+FS+ GS A L
Sbjct: 61 SLKSPPSPPAASPSLSPS------PSPSSISSPPADAPAPSGNAAASISFSMFGSVATVL 120
BLAST of MELO3C032763 vs. ExPASy TrEMBL
Match:
A0A6J1JSK4 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488535 PE=4 SV=1)
HSP 1 Score: 112.8 bits (281), Expect = 9.6e-22
Identity = 83/127 (65.35%), Postives = 94/127 (74.02%), Query Frame = 0
Query: 1 MAIRSLVAMILVSFLIASAFAQ--------SPTQSPSKAPSVSPSVKSPKSSPAFAPTPS 60
MA R V M+ V+ LI SA AQ SPT+SPSKAPS+SPSV+SPKSSPA APTP+
Sbjct: 1 MAHRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVQSPKSSPAAAPTPT 60
Query: 61 SLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVAL 120
SLKSPPSPP+ SPS SPS SPSSISSPPADAPAPSGN AASI+ S+ GS A L
Sbjct: 61 SLKSPPSPPAASPSLSPS------PSPSSISSPPADAPAPSGNSAASISLSMFGSVAAVL 120
BLAST of MELO3C032763 vs. ExPASy TrEMBL
Match:
A0A6J1E9Q3 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430664 PE=4 SV=1)
HSP 1 Score: 111.3 bits (277), Expect = 2.8e-21
Identity = 87/127 (68.50%), Postives = 93/127 (73.23%), Query Frame = 0
Query: 1 MAIRSLVAMILVSFLIASAFAQSPT--------QSPSKAPSVSPSVKSPKSSPAFAPTPS 60
MAIRS V MILV+ LI SA AQSP +SPSKAPS SPSVKSPKSSPA APTP+
Sbjct: 1 MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPA-APTPA 60
Query: 61 SLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVAL 120
S SPS+SPSPA SPSSISSPPADAPAPSG+GAASI+FSV GS AV L
Sbjct: 61 S--------------SPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVL 112
BLAST of MELO3C032763 vs. TAIR 10
Match:
AT5G64310.1 (arabinogalactan protein 1 )
HSP 1 Score: 51.6 bits (122), Expect = 5.0e-07
Identity = 59/132 (44.70%), Postives = 73/132 (55.30%), Query Frame = 0
Query: 4 RSLVAMILVSFLIASAFAQSPTQSPSK----------------APSVSPSVKSPKSSPAF 63
+SLV ++L + LI+SA AQSP +PS AP+ +P V SP SPA
Sbjct: 5 KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEV-SPSPSPAA 64
Query: 64 APTPSSLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGS 120
A TP S SPPSPP T + SPA SPS+IS P +AP P+ GA S F+ GS
Sbjct: 65 ALTPESSASPPSPPLADSPT----ADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGS 124
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0061155.1 | 5.9e-42 | 99.16 | classical arabinogalactan protein 1-like [Cucumis melo var. makuwa] | [more] |
XP_038877310.1 | 8.9e-30 | 79.20 | classical arabinogalactan protein 1 [Benincasa hispida] | [more] |
KGN53727.1 | 9.8e-29 | 79.67 | hypothetical protein Csa_015026 [Cucumis sativus] | [more] |
XP_023542663.1 | 7.3e-24 | 68.50 | classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022942993.1 | 7.3e-24 | 68.50 | classical arabinogalactan protein 1-like [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Q8LCN5 | 7.1e-06 | 44.70 | Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7V5Q9 | 2.9e-42 | 99.16 | Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A0A0KZB8 | 4.7e-29 | 79.67 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1 | [more] |
A0A6J1FW49 | 3.5e-24 | 68.50 | classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
A0A6J1JSK4 | 9.6e-22 | 65.35 | classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148... | [more] |
A0A6J1E9Q3 | 2.8e-21 | 68.50 | classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
Match Name | E-value | Identity | Description | |
AT5G64310.1 | 5.0e-07 | 44.70 | arabinogalactan protein 1 | [more] |